Experiment set4IT041 for Methanococcus maripaludis JJ

Compare to:

control, 1x iron with casamino acids and vitamins, formate media

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00235 -6.0 -21.5 hypothetical protein compare
MMJJ_RS00475 -5.1 -3.0 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS09375 -5.1 -2.6 hypothetical protein compare
MMJJ_RS03615 -5.1 -3.5 cobalt-precorrin-8 methylmutase compare
MMJJ_RS03760 -5.0 -3.4 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS05995 -4.9 -3.2 ATP-binding cassette domain-containing protein compare
MMJJ_RS03580 -4.8 -3.3 TIGR00303 family protein compare
MMJJ_RS01880 -4.6 -3.2 RlmE family RNA methyltransferase compare
MMJJ_RS05450 -4.6 -18.6 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS05650 -4.5 -3.1 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS04475 -4.4 -5.2 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS06490 -4.4 -3.0 methanogenesis marker 2 protein compare
MMJJ_RS06695 -4.4 -4.2 amidohydrolase compare
MMJJ_RS04485 -4.4 -8.4 riboflavin synthase compare
MMJJ_RS03840 -4.3 -2.9 DHH family phosphoesterase compare
MMJJ_RS03875 -4.3 -5.0 CBS domain-containing protein compare
MMJJ_RS08320 -4.1 -3.7 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS04200 -4.0 -8.5 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS03005 -4.0 -3.9 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS04730 -3.9 -3.8 tyrosine decarboxylase MfnA compare
MMJJ_RS06240 -3.9 -4.2 dihydropteroate synthase-like protein compare
MMJJ_RS05575 -3.9 -5.8 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS07665 -3.9 -21.6 formate dehydrogenase subunit alpha compare
MMJJ_RS01935 -3.8 -6.3 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS07245 -3.8 -6.3 amidohydrolase family protein compare
MMJJ_RS00275 -3.8 -3.2 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06725 -3.8 -15.4 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS03895 -3.7 -4.4 hydrogenase expression/formation protein HypE compare
MMJJ_RS03620 -3.7 -6.6 DUF2097 domain-containing protein compare
MMJJ_RS05535 -3.7 -14.8 hypothetical protein compare
MMJJ_RS08250 -3.6 -8.2 hydrogenase maturation peptidase HycI compare
MMJJ_RS08020 -3.5 -8.9 nucleotidyltransferase domain-containing protein compare
MMJJ_RS08625 -3.5 -7.4 magnesium/cobalt transporter CorA compare
MMJJ_RS06255 -3.4 -7.6 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS05810 -3.4 -7.9 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS06910 -3.4 -3.0 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS01810 -3.4 -2.6 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS03065 -3.4 -15.4 CBS domain-containing protein compare
MMJJ_RS06860 -3.3 -4.6 hypothetical protein compare
MMJJ_RS06840 -3.3 -5.0 nickel-dependent hydrogenase large subunit compare
MMJJ_RS07655 -3.3 -14.8 hypothetical protein compare
MMJJ_RS05070 -3.3 -2.8 DNA primase catalytic subunit PriS compare
MMJJ_RS06905 -3.3 -3.2 hypothetical protein compare
MMJJ_RS04800 -3.3 -7.7 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS03820 -3.2 -5.3 hydrogenase formation protein HypD compare
MMJJ_RS07875 -3.2 -2.2 FAD-dependent oxidoreductase compare
MMJJ_RS08055 -3.2 -8.3 methanogenesis marker 14 protein compare
MMJJ_RS07670 -3.2 -16.6 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS02090 -3.1 -6.8 tyramine--L-glutamate ligase compare
MMJJ_RS05610 -3.1 -5.5 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS04155 -3.1 -8.5 hypothetical protein compare
MMJJ_RS08080 -3.1 -11.4 TIGR00300 family protein compare
MMJJ_RS00520 -3.1 -6.9 PDGLE domain-containing protein compare
MMJJ_RS05655 -3.1 -9.1 HisA/HisF family protein compare
MMJJ_RS00355 -3.1 -4.1 ribonuclease P protein component 4 compare
MMJJ_RS06865 -3.0 -4.4 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS02200 -3.0 -11.2 chorismate pyruvate-lyase family protein compare
MMJJ_RS06040 -3.0 -4.9 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS02275 -3.0 -5.1 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06835 -3.0 -11.8 4Fe-4S binding protein compare
MMJJ_RS06485 -3.0 -4.2 phosphoglycerate kinase compare
MMJJ_RS04685 -3.0 -9.4 carbamoyltransferase HypF compare
MMJJ_RS05620 -3.0 -5.3 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS05260 -3.0 -6.7 ATP-grasp domain-containing protein compare
MMJJ_RS02920 -3.0 -2.7 30S ribosomal protein S27ae compare
MMJJ_RS07380 -3.0 -10.2 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS04975 -3.0 -2.6 glycosyltransferase family 4 protein compare
MMJJ_RS03110 -2.9 -5.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS06915 -2.9 -11.9 helix-turn-helix domain-containing protein compare
MMJJ_RS01750 -2.9 -3.8 ferrous iron transport protein A compare
MMJJ_RS06625 -2.9 -2.8 pyruvate synthase subunit PorB compare
MMJJ_RS01565 -2.9 -7.2 TIGR00267 family protein compare
MMJJ_RS00450 -2.8 -2.2 DUF126 domain-containing protein compare
MMJJ_RS01600 -2.8 -3.7 radical SAM protein compare
MMJJ_RS02045 -2.8 -3.9 molybdenum cofactor guanylyltransferase compare
MMJJ_RS03965 -2.8 -2.1 DNA-directed RNA polymerase subunit L compare
MMJJ_RS06855 -2.8 -1.7 DUF2104 domain-containing protein compare
MMJJ_RS00210 -2.8 -3.0 DUF530 family protein compare
MMJJ_RS00370 -2.8 -2.1 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS07705 -2.8 -3.3 GTP-binding protein EngB compare
MMJJ_RS05330 -2.8 -3.1 DNA polymerase II large subunit compare
MMJJ_RS04050 -2.8 -2.4 dihydroneopterin aldolase family protein compare
MMJJ_RS08005 -2.8 -16.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS03785 -2.7 -3.2 hypothetical protein compare
MMJJ_RS04995 -2.7 -7.1 Tfx family DNA-binding protein compare
MMJJ_RS08330 -2.7 -3.4 SufD family Fe-S cluster assembly protein compare
MMJJ_RS03670 -2.7 -5.2 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS05490 -2.7 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS05225 -2.7 -1.9 Gar1/Naf1 family protein compare
MMJJ_RS06785 -2.7 -8.2 RNA ligase partner protein compare
MMJJ_RS05295 -2.7 -10.7 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS07410 -2.7 -4.5 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS04595 -2.7 -4.2 hypothetical protein compare
MMJJ_RS07950 -2.6 -4.3 4Fe-4S binding protein compare
MMJJ_RS08340 -2.6 -6.6 archaeoflavoprotein AfpA compare
MMJJ_RS06705 -2.6 -5.4 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS05360 -2.6 -7.3 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS03115 -2.6 -5.5 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS01690 -2.6 -4.2 methanogenesis marker 12 protein compare
MMJJ_RS07000 -2.6 -2.4 TrkH family potassium uptake protein compare
MMJJ_RS03295 -2.6 -12.2 PHP domain-containing protein compare
MMJJ_RS03270 -2.6 -2.1 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS01415 -2.6 -3.6 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS03660 -2.5 -4.7 DUF447 family protein compare
MMJJ_RS07470 -2.5 -2.4 50S ribosome-binding GTPase compare
MMJJ_RS03830 -2.5 -8.2 CBS domain-containing protein compare
MMJJ_RS04520 -2.5 -6.4 coenzyme F430 synthase compare
MMJJ_RS00125 -2.5 -2.9 KEOPS complex subunit Cgi121 compare
MMJJ_RS00215 -2.5 -2.6 CCA tRNA nucleotidyltransferase compare
MMJJ_RS08000 -2.5 -9.1 HesA/MoeB/ThiF family protein compare
MMJJ_RS03150 -2.5 -6.5 2-phospho-L-lactate transferase compare
MMJJ_RS06730 -2.5 -8.1 ATP-binding cassette domain-containing protein compare
MMJJ_RS05930 -2.5 -2.5 cell division protein SepF compare
MMJJ_RS08795 -2.5 -3.2 phosphoglucosamine mutase compare
MMJJ_RS07360 -2.4 -2.0 TIGR00269 family protein compare
MMJJ_RS05445 -2.4 -2.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS05950 -2.4 -3.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS01865 -2.4 -6.1 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS02040 -2.4 -2.2 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS03190 -2.4 -3.1 phosphopyruvate hydratase compare
MMJJ_RS06805 -2.4 -3.3 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS06155 -2.4 -5.8 phosphatidylglycerophosphatase A compare
MMJJ_RS04655 -2.4 -4.8 FAD-dependent oxidoreductase compare
MMJJ_RS05380 -2.4 -1.7 hypothetical protein compare
MMJJ_RS01345 -2.4 -4.1 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS00070 -2.4 -2.9 CooT family nickel-binding protein compare
MMJJ_RS06375 -2.3 -3.6 UbiX family flavin prenyltransferase compare
MMJJ_RS07350 -2.3 -3.7 4Fe-4S binding protein compare
MMJJ_RS07660 -2.3 -11.2 carbonic anhydrase compare
MMJJ_RS05190 -2.3 -8.9 gamma carbonic anhydrase family protein compare
MMJJ_RS06875 -2.3 -3.2 hypothetical protein compare
MMJJ_RS06185 -2.3 -6.4 cobalamin biosynthesis protein compare
MMJJ_RS03055 -2.2 -2.5 hypothetical protein compare
MMJJ_RS00560 -2.2 -3.8 homoisocitrate dehydrogenase compare
MMJJ_RS00645 -2.2 -10.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS05375 -2.2 -14.8 radical SAM protein compare
MMJJ_RS03630 -2.2 -9.9 AMP phosphorylase compare
MMJJ_RS08095 -2.2 -4.9 cobyric acid synthase CobQ compare
MMJJ_RS03865 -2.2 -2.1 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS03200 -2.2 -2.3 uroporphyrinogen-III synthase compare
MMJJ_RS01755 -2.2 -2.8 ferrous iron transport protein B compare
MMJJ_RS03800 -2.2 -9.8 aldolase compare
MMJJ_RS06110 -2.1 -2.4 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS04675 -2.1 -5.7 thiamine pyrophosphate-binding protein compare
MMJJ_RS00530 -2.1 -11.7 cobalt ECF transporter T component CbiQ compare
MMJJ_RS00515 -2.1 -12.2 cobalt transporter CbiM compare
MMJJ_RS06510 -2.1 -3.5 LL-diaminopimelate aminotransferase compare
MMJJ_RS00425 -2.1 -3.4 hypothetical protein compare
MMJJ_RS08855 -2.1 -3.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS06220 -2.0 -3.6 polyamine aminopropyltransferase compare
MMJJ_RS04010 -2.0 -6.2 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS06930 -2.0 -3.6 type II methionyl aminopeptidase compare
MMJJ_RS03845 -2.0 -3.9 translation initiation factor IF-2 compare
MMJJ_RS07155 -2.0 -8.2 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS06175 -2.0 -3.1 DUF1743 domain-containing protein compare
MMJJ_RS06270 -2.0 -7.2 dethiobiotin synthase compare
MMJJ_RS03810 -2.0 -2.4 AIR synthase-related protein compare
MMJJ_RS08840 -1.9 -4.0 calcium/sodium antiporter compare
MMJJ_RS01360 -1.9 -2.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS03765 -1.9 -7.2 hypothetical protein compare
MMJJ_RS07345 -1.9 -5.3 homocysteine biosynthesis protein compare
MMJJ_RS03815 -1.9 -2.3 nascent polypeptide-associated complex protein compare
MMJJ_RS00205 -1.9 -5.3 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS00065 -1.9 -9.3 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS09095 -1.9 -8.6 MMPL family transporter compare
MMJJ_RS00570 -1.9 -1.8 ribonuclease P compare
MMJJ_RS00045 -1.9 -10.7 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS04110 -1.9 -4.3 hypothetical protein compare
MMJJ_RS08620 -1.9 -2.8 DUF373 family protein compare
MMJJ_RS05720 -1.9 -2.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS00550 -1.9 -7.6 AIR synthase-related protein compare
MMJJ_RS06250 -1.9 -2.4 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS07635 -1.9 -9.9 response regulator transcription factor compare
MMJJ_RS05155 -1.8 -5.0 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS05415 -1.8 -1.8 hypothetical protein compare
MMJJ_RS00265 -1.8 -6.2 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS04985 -1.8 -4.0 glutamyl-tRNA reductase compare
MMJJ_RS05065 -1.8 -2.8 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS07640 -1.8 -14.7 cache domain-containing protein compare
MMJJ_RS00035 -1.8 -11.6 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS01355 -1.8 -2.9 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS07370 -1.8 -3.6 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS06260 -1.8 -6.0 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS00075 -1.7 -8.9 AAA family ATPase compare
MMJJ_RS06225 -1.7 -2.4 adenosylmethionine decarboxylase compare
MMJJ_RS02055 -1.7 -11.4 GTP 3',8-cyclase MoaA compare
MMJJ_RS00050 -1.7 -8.6 AAA family ATPase compare
MMJJ_RS03230 -1.7 -4.1 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS00060 -1.7 -11.2 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS07995 -1.7 -5.2 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS09175 -1.7 -1.0 anthranilate synthase component I compare
MMJJ_RS06050 -1.7 -7.5 molybdopterin molybdotransferase MoeA compare
MMJJ_RS07980 -1.7 -9.4 biotin synthase BioB compare
MMJJ_RS03095 -1.7 -2.5 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS01200 -1.7 -2.4 PRC-barrel domain-containing protein compare
MMJJ_RS09190 -1.7 -1.4 tryptophan synthase subunit beta compare
MMJJ_RS06010 -1.7 -5.3 hypothetical protein compare
MMJJ_RS08480 -1.7 -7.2 hydroxyethylthiazole kinase compare
MMJJ_RS08825 -1.7 -5.2 hypothetical protein compare
MMJJ_RS06020 -1.7 -5.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in iron experiments

For iron Iron (II) chloride tetrahydrate across organisms