Experiment set4IT041 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with (R)-2-Hydroxybutyrate 30 mM

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS14400 +1.2 10.3 acetyltransferase compare
BBR_RS17135 +1.0 1.4 RluA family pseudouridine synthase compare
BBR_RS13125 +1.0 1.9 ABC transporter permease compare
BBR_RS15915 +0.9 0.6 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS18755 +0.9 2.2 30S ribosome-binding factor RbfA compare
BBR_RS19450 +0.8 1.0 GTPase ObgE compare
BBR_RS19375 +0.7 1.5 acyl-CoA carboxylase subunit beta compare
BBR_RS14850 +0.7 2.5 VOC family protein compare
BBR_RS19070 +0.7 1.2 50S ribosomal protein L33 compare
BBR_RS19645 +0.7 4.3 RNA degradosome polyphosphate kinase compare
BBR_RS16060 +0.7 2.3 hypothetical protein compare
BBR_RS14335 +0.7 2.9 hypothetical protein compare
BBR_RS17415 +0.6 1.6 hypothetical protein compare
BBR_RS15850 +0.6 1.8 ASCH domain-containing protein compare
BBR_RS18525 +0.6 1.9 hypothetical protein compare
BBR_RS10740 +0.5 1.5 tRNA-Gly compare
BBR_RS17155 +0.5 1.0 cell division protein SepF compare
BBR_RS21055 +0.5 2.6 hypothetical protein compare
BBR_RS12375 +0.5 0.9 pantetheine-phosphate adenylyltransferase compare
BBR_RS20435 +0.5 0.7 CCA tRNA nucleotidyltransferase compare
BBR_RS21000 +0.5 1.6 hypothetical protein compare
BBR_RS15755 +0.5 1.2 hypothetical protein compare
BBR_RS10980 +0.5 4.4 TetR/AcrR family transcriptional regulator compare
BBR_RS20800 +0.5 1.4 hypothetical protein compare
BBR_RS16010 +0.4 2.1 hypothetical protein compare
BBR_RS19800 +0.4 3.8 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS13300 +0.4 0.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS11500 +0.4 3.7 glycosyltransferase family 2 protein compare
BBR_RS11975 +0.4 1.7 hypothetical protein compare
BBR_RS20815 +0.4 1.8 potassium transporter Trk compare
BBR_RS14345 +0.4 2.8 hypothetical protein compare
BBR_RS14220 +0.4 2.8 phosphomannomutase compare
BBR_RS21155 +0.4 2.4 hypothetical protein compare
BBR_RS18135 +0.4 2.1 hypothetical protein compare
BBR_RS14010 +0.4 2.0 TlyA family rRNA (cytidine-2'-O)-methyltransferase compare
BBR_RS14715 +0.4 0.6 XRE family transcriptional regulator compare
BBR_RS18555 +0.4 2.8 NlpC/P60 family protein compare
BBR_RS12370 +0.4 0.6 cell division protein compare
BBR_RS12470 +0.4 3.3 long-chain fatty acid--CoA ligase compare
BBR_RS20835 +0.4 1.7 hypothetical protein compare
BBR_RS13310 +0.4 2.6 hypothetical protein compare
BBR_RS20980 +0.4 0.8 hypothetical protein compare
BBR_RS15325 +0.4 1.2 hypothetical protein compare
BBR_RS15870 +0.4 1.7 hypothetical protein compare
BBR_RS17555 +0.4 1.3 ubiquitin-like protein Pup compare
BBR_RS20700 +0.4 1.6 ribulose phosphate epimerase compare
BBR_RS15490 +0.4 2.3 short-chain dehydrogenase compare
BBR_RS16780 +0.3 1.7 hypothetical protein compare
BBR_RS17075 +0.3 2.3 dihydrodipicolinate synthase family protein compare
BBR_RS14610 +0.3 1.2 DNA-binding response regulator compare
BBR_RS15305 +0.3 2.0 hypothetical protein compare
BBR_RS14150 +0.3 2.1 hypothetical protein compare
BBR_RS16710 +0.3 1.7 hypothetical protein compare
BBR_RS19440 +0.3 3.1 polysaccharide deacetylase family protein compare
BBR_RS12550 +0.3 2.9 sugar transferase compare
BBR_RS17000 +0.3 2.6 GTPase HflX compare
BBR_RS18045 +0.3 0.7 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BBR_RS17025 +0.3 2.4 DUF2252 domain-containing protein compare
BBR_RS21070 +0.3 2.4 DNA-binding protein compare
BBR_RS15650 +0.3 0.5 Holliday junction resolvase compare
BBR_RS16970 +0.3 2.1 phosphoglycerate dehydrogenase compare
BBR_RS15340 +0.3 1.2 hypothetical protein compare
BBR_RS20170 +0.3 2.9 LacI family transcriptional regulator compare
BBR_RS20770 +0.3 1.4 30S ribosomal protein S14 compare
BBR_RS16895 +0.3 2.0 MFS transporter compare
BBR_RS14585 +0.3 0.9 hypothetical protein compare
BBR_RS16685 +0.3 0.8 alcohol dehydrogenase compare
BBR_RS14765 +0.3 0.8 hypothetical protein compare
BBR_RS20750 +0.3 0.6 GntR family transcriptional regulator compare
BBR_RS12295 +0.3 0.6 RNA-binding protein compare
BBR_RS16880 +0.3 2.2 ROK family transcriptional regulator compare
BBR_RS13540 +0.3 2.0 alcohol dehydrogenase compare
BBR_RS14835 +0.3 1.7 sulfite exporter TauE/SafE family protein compare
BBR_RS13335 +0.3 2.1 transcriptional repressor compare
BBR_RS13545 +0.3 1.3 DUF4143 domain-containing protein compare
BBR_RS13305 +0.3 1.5 transcriptional repressor compare
BBR_RS15330 +0.3 1.0 hypothetical protein compare
BBR_RS12830 +0.3 2.0 G5 domain-containing protein compare
BBR_RS21120 +0.3 2.2 hypothetical protein compare
BBR_RS18770 +0.3 2.5 hypothetical protein compare
BBR_RS12855 +0.3 1.6 glycine cleavage system protein H compare
BBR_RS13685 +0.3 1.7 DUF4143 domain-containing protein compare
BBR_RS18625 +0.3 2.4 alpha/beta hydrolase compare
BBR_RS17370 +0.3 1.7 ABC transporter substrate-binding protein compare
BBR_RS18520 +0.3 1.9 ABC transporter ATP-binding protein compare
BBR_RS18800 +0.3 1.2 50S ribosomal protein L17 compare
BBR_RS15460 +0.3 1.3 hypothetical protein compare
BBR_RS13455 +0.3 0.9 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS17905 +0.3 2.6 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS13065 +0.3 2.1 amino acid ABC transporter ATP-binding protein compare
BBR_RS20175 +0.3 2.4 LacI family transcriptional regulator compare
BBR_RS12515 +0.3 2.2 LacI family transcriptional regulator compare
BBR_RS15885 +0.3 1.5 histidine kinase compare
BBR_RS15860 +0.3 0.3 DUF2316 domain-containing protein compare
BBR_RS15230 +0.3 1.2 elongation factor 4 compare
BBR_RS15170 +0.3 1.7 HlyC/CorC family transporter compare
BBR_RS14350 +0.3 1.1 hypothetical protein compare
BBR_RS13575 +0.2 1.5 sugar O-acetyltransferase compare
BBR_RS16405 +0.2 1.7 peptidylprolyl isomerase compare
BBR_RS18130 +0.2 2.1 glucokinase compare
BBR_RS15085 +0.2 0.3 3-dehydroquinate synthase compare
BBR_RS11510 +0.2 0.8 signal recognition particle-docking protein FtsY compare
BBR_RS17035 +0.2 1.5 imidazole glycerol phosphate synthase subunit HisH compare
BBR_RS15000 +0.2 1.7 ABC transporter ATP-binding protein compare
BBR_RS20330 +0.2 2.0 PTS sugar transporter subunit IIA compare
BBR_RS20320 +0.2 2.3 PTS ascorbate transporter subunit IIC compare
BBR_RS14900 +0.2 1.1 DNA-binding response regulator compare
BBR_RS18665 +0.2 2.1 carbohydrate ABC transporter permease compare
BBR_RS13705 +0.2 1.5 Conserved hypothetical membrane spanning protein, contains a vitamin K epoxide reductase domain compare
BBR_RS15570 +0.2 1.1 branched-chain amino acid transport system II carrier protein compare
BBR_RS13270 +0.2 1.7 ABC transporter ATP-binding protein compare
BBR_RS21095 +0.2 0.7 chemotaxis protein compare
BBR_RS16630 +0.2 1.4 exodeoxyribonuclease III compare
BBR_RS20085 +0.2 1.8 histidine phosphatase family protein compare
BBR_RS20040 +0.2 2.1 amino acid permease compare
BBR_RS18645 +0.2 1.8 DNA-binding response regulator compare
BBR_RS21040 +0.2 0.8 transcription factor WhiB compare
BBR_RS14960 +0.2 1.2 alpha/beta hydrolase compare
BBR_RS16670 +0.2 1.2 hypothetical protein compare
BBR_RS11145 +0.2 0.6 hypothetical protein compare
BBR_RS20810 +0.2 0.7 pirin compare
BBR_RS14945 +0.2 1.3 peptidase E compare
BBR_RS14360 +0.2 1.3 hypothetical protein compare
BBR_RS16145 +0.2 1.2 hypothetical protein compare
BBR_RS13160 +0.2 1.6 serine O-acetyltransferase compare
BBR_RS13520 +0.2 1.3 polysaccharide synthesis protein GtrA compare
BBR_RS10655 +0.2 1.4 hypothetical protein compare
BBR_RS20075 +0.2 1.9 LacI family transcriptional regulator compare
BBR_RS16805 +0.2 1.6 aldose 1-epimerase compare
BBR_RS14645 +0.2 1.2 amino acid ABC transporter permease compare
BBR_RS17085 +0.2 1.5 KR domain-containing protein compare
BBR_RS13945 +0.2 0.6 Txe/YoeB family addiction module toxin compare
BBR_RS16580 +0.2 1.2 EamA/RhaT family transporter compare
BBR_RS15455 +0.2 0.6 orotate phosphoribosyltransferase compare
BBR_RS14500 +0.2 1.6 hypothetical protein compare
BBR_RS16660 +0.2 1.7 ABC transporter ATP-binding protein compare
BBR_RS10735 +0.2 1.8 zinc metalloprotease HtpX compare
BBR_RS12575 +0.2 0.8 hypothetical protein compare
BBR_RS14635 +0.2 1.2 amino acid ABC transporter ATP-binding protein compare
BBR_RS18195 +0.2 1.7 hypothetical protein compare
BBR_RS17250 +0.2 1.6 LacI family DNA-binding transcriptional regulator compare
BBR_RS14055 +0.2 0.9 ABC-2 transporter permease compare
BBR_RS20930 +0.2 0.8 hypothetical protein compare
BBR_RS20105 +0.2 1.9 YhgE/Pip domain-containing protein compare
BBR_RS12835 +0.2 1.1 thioredoxin compare
BBR_RS18325 +0.2 0.7 DNA-binding protein compare
BBR_RS15975 +0.2 1.4 hypothetical protein compare
BBR_RS20325 +0.2 1.5 PTS lactose transporter subunit IIB compare
BBR_RS16620 +0.2 1.1 DUF3159 domain-containing protein compare
BBR_RS20625 +0.2 1.3 hypothetical protein compare
BBR_RS12480 +0.2 1.2 arabinose-proton symporter compare
BBR_RS15480 +0.2 1.5 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase compare
BBR_RS14565 +0.2 1.5 DNA-processing protein DprA compare
BBR_RS21145 +0.2 1.3 ISL3 family transposase compare
BBR_RS13155 +0.2 1.2 S-ribosylhomocysteine lyase compare
BBR_RS12600 +0.2 1.2 serine acetyltransferase compare
BBR_RS14930 +0.2 1.4 DNA-binding protein, also contains divergent AAA domain for ATP binding (DNA helicase) compare
BBR_RS11540 +0.2 0.3 DUF1727 domain-containing protein compare
BBR_RS14720 +0.2 1.3 MFS transporter compare
BBR_RS17300 +0.2 1.0 membrane protein compare
BBR_RS11395 +0.2 0.8 DNA-binding protein compare
BBR_RS16590 +0.2 1.4 DNA-binding response regulator compare
BBR_RS14905 +0.2 1.5 two-component sensor histidine kinase compare
BBR_RS16990 +0.2 1.4 cation transporter compare
BBR_RS17115 +0.2 1.3 aldo/keto reductase compare
BBR_RS17015 +0.2 1.4 MFS transporter compare
BBR_RS16295 +0.2 0.9 DNA methyltransferase compare
BBR_RS15390 +0.2 1.0 phospholipase compare
BBR_RS16835 +0.2 1.0 cell wall biosynthesis-associated protein compare
BBR_RS18715 +0.2 1.5 transcriptional regulator compare
BBR_RS20230 +0.2 1.6 hypothetical protein compare
BBR_RS20140 +0.2 1.8 alpha-galactosidase compare
BBR_RS17875 +0.2 1.3 glucan 1,3-beta-glucosidase compare
BBR_RS16520 +0.2 1.3 ribosome-associated translation inhibitor RaiA compare
BBR_RS16035 +0.2 0.8 hypothetical protein compare
BBR_RS20515 +0.2 1.5 transposase compare
BBR_RS17740 +0.2 0.7 hypothetical protein compare
BBR_RS15920 +0.2 0.8 type II toxin-antitoxin system YafQ family toxin compare
BBR_RS20125 +0.2 1.6 SIR2 family protein compare
BBR_RS17005 +0.2 1.3 methyltransferase domain-containing protein compare
BBR_RS18710 +0.2 1.4 hypothetical protein compare
BBR_RS12415 +0.2 1.5 permease compare
BBR_RS16080 +0.2 0.6 DUF1287 domain-containing protein compare
BBR_RS18955 +0.2 1.5 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS10640 +0.2 1.6 alpha/beta hydrolase compare
BBR_RS19290 +0.2 1.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
BBR_RS16040 +0.2 0.6 hypothetical protein compare
BBR_RS10805 +0.2 1.5 LacI family transcriptional regulator compare
BBR_RS16310 +0.2 1.1 hypothetical protein compare
BBR_RS14625 +0.2 0.9 pyrroline-5-carboxylate reductase compare
BBR_RS17215 +0.2 1.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BBR_RS12580 +0.2 1.0 transposase compare
BBR_RS11640 +0.2 0.5 hypothetical protein compare
BBR_RS16015 +0.2 0.6 DUF2089 domain-containing protein compare
BBR_RS20730 +0.2 0.8 Crp/Fnr family transcriptional regulator compare
BBR_RS17270 +0.2 1.3 ROK family protein compare
BBR_RS13800 +0.2 0.7 hypothetical protein compare
BBR_RS14380 +0.2 1.4 phosphate acetyltransferase compare
BBR_RS13985 +0.2 0.9 membrane protein compare
BBR_RS13865 +0.2 1.2 RNA methyltransferase compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress (R)-2-Hydroxybutyrate across organisms