Experiment set4IT041 for Burkholderia phytofirmans PsJN

Compare to:

Min media with glucose

200 most important genes:

  gene name fitness t score description  
BPHYT_RS03480 -7.6 -7.4 ferritin compare
BPHYT_RS33915 -7.4 -5.1 isopropylmalate isomerase compare
BPHYT_RS17670 -6.9 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17685 -6.9 -8.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17675 -6.6 -2.6 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS04955 -6.4 -2.5 methionyl-tRNA synthetase compare
BPHYT_RS33875 -6.3 -9.2 tryptophan synthase subunit alpha compare
BPHYT_RS16835 -6.2 -9.5 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS14855 -6.2 -4.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS02590 -6.2 -10.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17690 -6.1 -12.7 imidazole glycerol phosphate synthase compare
BPHYT_RS15915 -6.0 -8.2 ornithine carbamoyltransferase compare
BPHYT_RS17890 -5.9 -3.9 shikimate kinase compare
BPHYT_RS14845 -5.9 -5.4 cysteine synthase compare
BPHYT_RS13705 -5.8 -5.6 chorismate synthase compare
BPHYT_RS12530 -5.8 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS33880 -5.7 -12.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS17855 -5.7 -16.4 glutamate synthase compare
BPHYT_RS33865 -5.7 -10.2 tryptophan synthase alpha chain compare
BPHYT_RS04740 -5.7 -6.7 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS18320 -5.6 -14.0 orotate phosphoribosyltransferase compare
BPHYT_RS33835 -5.6 -11.3 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS12985 -5.4 -3.7 amino acid acetyltransferase compare
BPHYT_RS14915 -5.4 -10.4 phosphoserine aminotransferase compare
BPHYT_RS02610 -5.4 -5.8 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS01590 -5.4 -9.6 methionine biosynthesis protein MetW compare
BPHYT_RS03150 -5.2 -13.8 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS15920 -5.2 -14.1 argininosuccinate synthase compare
BPHYT_RS16245 -5.2 -6.7 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06545 -5.2 -13.3 acetolactate synthase compare
BPHYT_RS08960 -5.0 -3.4 threonine synthase compare
BPHYT_RS17400 -5.0 -10.1 anthranilate phosphoribosyltransferase compare
BPHYT_RS33900 -5.0 -10.4 3-isopropylmalate dehydrogenase compare
BPHYT_RS06610 -5.0 -2.7 triosephosphate isomerase compare
BPHYT_RS09500 -5.0 -6.8 glucose-6-phosphate isomerase compare
BPHYT_RS17680 -5.0 -4.6 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS08955 -5.0 -5.9 homoserine dehydrogenase compare
BPHYT_RS03640 -4.9 -5.8 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS14895 -4.8 -4.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS33840 -4.8 -11.1 amidophosphoribosyltransferase compare
BPHYT_RS14910 -4.7 -11.3 chorismate mutase compare
BPHYT_RS17390 -4.6 -13.8 anthranilate synthase subunit I compare
BPHYT_RS04725 -4.6 -9.4 sulfite reductase compare
BPHYT_RS05225 -4.5 -8.1 phosphoenolpyruvate carboxylase compare
BPHYT_RS33645 -4.5 -5.4 homoserine kinase compare
BPHYT_RS16675 -4.4 -3.0 dihydroorotase compare
BPHYT_RS14190 -4.4 -11.6 carbamoyl phosphate synthase large subunit compare
BPHYT_RS16255 -4.4 -7.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS06555 -4.3 -8.9 ketol-acid reductoisomerase compare
BPHYT_RS06900 -4.3 -7.7 aspartate aminotransferase compare
BPHYT_RS16270 -4.3 -5.0 phosphoglycerate kinase compare
BPHYT_RS12845 -4.3 -15.8 ATPase compare
BPHYT_RS17885 -4.3 -7.0 3-dehydroquinate synthase compare
BPHYT_RS04965 -4.2 -9.4 ATP-binding protein compare
BPHYT_RS16840 -4.2 -4.1 transketolase compare
BPHYT_RS01595 -4.2 -8.6 homoserine O-acetyltransferase compare
BPHYT_RS05010 -4.2 -6.9 RpiR family transcriptional regulator compare
BPHYT_RS17715 -4.2 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS15075 -4.1 -4.1 dihydrokaempferol 4-reductase compare
BPHYT_RS06405 -4.0 -5.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS16905 -4.0 -5.9 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS36275 -4.0 -3.1 hypothetical protein compare
BPHYT_RS09515 -3.9 -6.1 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS08850 -3.8 -3.3 transcriptional regulator compare
BPHYT_RS16735 -3.8 -6.6 phosphogluconate dehydratase compare
BPHYT_RS08565 -3.8 -1.9 dihydroorotate dehydrogenase compare
BPHYT_RS06175 -3.7 -9.4 LPS biosynthesis compare
BPHYT_RS04720 -3.6 -4.2 transcriptional regulator compare
BPHYT_RS10100 -3.6 -5.0 dihydroxy-acid dehydratase compare
BPHYT_RS17395 -3.5 -3.6 anthranilate synthase subunit II compare
BPHYT_RS12840 -3.5 -6.2 pyruvate dehydrogenase compare
BPHYT_RS03535 -3.5 -5.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS05020 -3.5 -8.9 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS03725 -3.4 -2.1 serine hydroxymethyltransferase compare
BPHYT_RS05040 -3.3 -4.9 sugar ABC transporter ATPase compare
BPHYT_RS06045 -3.3 -9.0 transaldolase compare
BPHYT_RS17700 -3.3 -3.7 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS05960 -3.3 -5.6 endoribonuclease L-PSP compare
BPHYT_RS17405 -3.1 -1.7 indole-3-glycerol phosphate synthase compare
BPHYT_RS33920 -3.1 -11.3 type II citrate synthase compare
BPHYT_RS04730 -3.0 -3.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS14195 -2.9 -3.6 carbamoyl phosphate synthase small subunit compare
BPHYT_RS06685 -2.9 -3.6 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS12465 -2.7 -4.6 inositol monophosphatase compare
BPHYT_RS05035 -2.6 -6.1 sugar ABC transporter permease compare
BPHYT_RS13220 -2.6 -7.8 phosphomethylpyrimidine synthase compare
BPHYT_RS05025 -2.6 -5.3 sugar ABC transporter substrate-binding protein compare
BPHYT_RS05030 -2.5 -3.0 sugar ABC transporter permease compare
BPHYT_RS02905 -2.5 -17.8 RNA polymerase subunit sigma-54 compare
BPHYT_RS03625 -2.5 -10.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS04745 -2.4 -5.0 sulfate adenylyltransferase compare
BPHYT_RS14865 -2.3 -4.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS03495 -2.3 -6.7 hypothetical protein compare
BPHYT_RS18705 -2.2 -2.3 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS15670 -2.2 -6.7 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS14900 -2.1 -3.4 prephenate dehydrogenase compare
BPHYT_RS17380 -2.0 -9.8 ribulose-phosphate 3-epimerase compare
BPHYT_RS03645 -1.9 -2.6 tRNA dimethylallyltransferase compare
BPHYT_RS22420 -1.9 -1.9 membrane protein compare
BPHYT_RS05730 -1.9 -5.1 hypothetical protein compare
BPHYT_RS09145 -1.9 -7.1 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS17520 -1.9 -6.0 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS08950 -1.9 -5.7 aminotransferase compare
BPHYT_RS18340 -1.9 -2.3 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS12150 -1.8 -12.7 PII uridylyl-transferase compare
BPHYT_RS20095 -1.8 -1.7 transcriptional regulator compare
BPHYT_RS02570 -1.8 -7.3 phosphocarrier protein HPr compare
BPHYT_RS06375 -1.7 -6.6 ribonuclease compare
BPHYT_RS28965 -1.7 -2.7 hypothetical protein compare
BPHYT_RS28930 -1.6 -1.5 chromosome partitioning protein ParA compare
BPHYT_RS15710 -1.6 -2.2 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS15570 -1.6 -8.4 NAD-dependent dehydratase compare
BPHYT_RS05255 -1.5 -2.5 phage abortive infection protein compare
BPHYT_RS12940 -1.5 -4.2 signal transduction histidine kinase compare
BPHYT_RS16250 -1.5 -1.5 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS14550 -1.5 -1.4 tRNA-Asn compare
BPHYT_RS08410 -1.5 -1.6 dehydrogenase compare
BPHYT_RS07570 -1.5 -1.4 hypothetical protein compare
BPHYT_RS20590 -1.4 -2.4 methionine sulfoxide reductase A compare
BPHYT_RS02865 -1.4 -3.0 hypothetical protein compare
BPHYT_RS33580 -1.4 -4.7 geranyltranstransferase compare
BPHYT_RS28860 -1.3 -1.4 haloacid dehalogenase compare
BPHYT_RS13605 -1.3 -1.7 tRNA-Pro compare
BPHYT_RS02005 -1.3 -1.5 diguanylate phosphodiesterase compare
BPHYT_RS16490 -1.3 -4.7 glycerol-3-phosphate dehydrogenase compare
BPHYT_RS23230 -1.3 -0.8 histidine kinase compare
BPHYT_RS16500 -1.3 -3.5 MIP family channel protein compare
BPHYT_RS09155 -1.3 -4.4 3-ketoacyl-ACP reductase compare
BPHYT_RS00980 -1.2 -1.5 GCN5 family acetyltransferase compare
BPHYT_RS12935 -1.2 -5.2 chemotaxis protein CheY compare
BPHYT_RS03945 -1.2 -2.3 hypothetical protein compare
BPHYT_RS12265 -1.2 -1.6 alanine acetyltransferase compare
BPHYT_RS16495 -1.2 -7.9 glycerol kinase compare
BPHYT_RS20155 -1.2 -1.7 hypothetical protein compare
BPHYT_RS17095 -1.2 -3.4 proline--tRNA ligase compare
BPHYT_RS30185 -1.2 -2.6 DNA-directed RNA polymerase subunit alpha compare
BPHYT_RS12060 -1.2 -1.3 hypothetical protein compare
BPHYT_RS08880 -1.1 -3.8 phosphate transport regulator compare
BPHYT_RS15620 -1.1 -4.5 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS03570 -1.1 -5.1 heat-inducible transcription repressor HrcA compare
BPHYT_RS19325 -1.1 -2.7 glycine cleavage system H protein compare
BPHYT_RS16340 -1.1 -5.3 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS06410 -1.1 -1.7 transcriptional regulator compare
BPHYT_RS26490 -1.1 -1.2 hypothetical protein compare
BPHYT_RS09480 -1.1 -1.7 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS33870 -1.1 -2.9 DNA methylase N-4 compare
BPHYT_RS14400 -1.0 -2.5 anti-sigma factor compare
BPHYT_RS05620 -1.0 -1.4 CsbD family protein compare
BPHYT_RS34745 -1.0 -1.2 hypothetical protein compare
BPHYT_RS22470 -1.0 -1.6 hydrolase compare
BPHYT_RS11310 -1.0 -1.4 LysR family transcriptional regulator compare
BPHYT_RS06075 -1.0 -4.8 hypothetical protein compare
BPHYT_RS28870 -1.0 -2.2 MarR family transcriptional regulator compare
BPHYT_RS04750 -1.0 -1.8 uroporphyrin-III C-methyltransferase compare
BPHYT_RS20840 -1.0 -1.6 beta-lactamase compare
BPHYT_RS26080 -0.9 -1.2 ABC transporter ATPase compare
BPHYT_RS25815 -0.9 -1.5 deoxyribose-phosphate aldolase compare
BPHYT_RS17945 -0.9 -1.9 cytochrome C biogenesis protein compare
BPHYT_RS16975 -0.9 -4.6 shikimate 5-dehydrogenase compare
BPHYT_RS08000 -0.9 -1.7 antibiotic biosynthesis monooxygenase compare
BPHYT_RS20900 -0.9 -2.2 phytanoyl-CoA dioxygenase compare
BPHYT_RS01095 -0.9 -1.0 hypothetical protein compare
BPHYT_RS14920 -0.9 -1.1 hypothetical protein compare
BPHYT_RS25575 -0.9 -1.1 alpha/beta hydrolase compare
BPHYT_RS27485 -0.9 -1.2 NAD-dependent dehydratase compare
BPHYT_RS36495 -0.9 -2.0 peptidase compare
BPHYT_RS09465 -0.9 -1.7 transcriptional regulator compare
BPHYT_RS08150 -0.9 -0.9 membrane protein compare
BPHYT_RS08885 -0.9 -4.3 inorganic phosphate transporter compare
BPHYT_RS22540 -0.9 -1.7 metal ABC transporter permease compare
BPHYT_RS09330 -0.9 -5.1 phytoene synthase compare
BPHYT_RS15220 -0.9 -1.9 plasmid maintenance system antidote protein compare
BPHYT_RS21485 -0.9 -1.0 hypothetical protein compare
BPHYT_RS24685 -0.9 -1.3 LysR family transcriptional regulator compare
BPHYT_RS01660 -0.9 -2.1 hypothetical protein compare
BPHYT_RS01505 -0.9 -1.7 7-cyano-7-deazaguanine reductase compare
BPHYT_RS13200 -0.9 -1.4 molybdopterin binding oxidoreductase compare
BPHYT_RS32880 -0.9 -1.0 alanine acetyltransferase compare
BPHYT_RS18710 -0.9 -1.3 membrane protein compare
BPHYT_RS13540 -0.8 -5.1 LysR family transcriptional regulator compare
BPHYT_RS21975 -0.8 -2.2 2-dehydropantoate 2-reductase compare
BPHYT_RS17100 -0.8 -4.8 RNA pyrophosphohydrolase compare
BPHYT_RS29840 -0.8 -1.4 polysaccharide biosynthesis protein compare
BPHYT_RS29035 -0.8 -1.5 arsenic transporter compare
BPHYT_RS33125 -0.8 -1.7 hypothetical protein compare
BPHYT_RS06725 -0.8 -1.7 MaoC family dehydratase compare
BPHYT_RS16435 -0.8 -6.8 alcohol dehydrogenase compare
BPHYT_RS20130 -0.8 -2.0 diguanylate phosphodiesterase compare
BPHYT_RS14185 -0.8 -1.9 transcription elongation factor GreA compare
BPHYT_RS16990 -0.8 -3.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS02860 -0.8 -0.8 membrane protein compare
BPHYT_RS11635 -0.8 -0.8 RNA polymerase subunit sigma-24 compare
BPHYT_RS30295 -0.8 -2.0 acyl-CoA dehydrogenase compare
BPHYT_RS26375 -0.8 -2.1 ATPase AAA compare
BPHYT_RS15190 -0.8 -1.1 acyl carrier protein compare
BPHYT_RS04875 -0.8 -2.4 alpha-ribazole phosphatase compare
BPHYT_RS10095 -0.8 -2.0 integrase compare
BPHYT_RS07255 -0.8 -2.3 4-oxalocrotonate decarboxylase compare
BPHYT_RS31770 -0.8 -2.7 TetR family transcriptional regulator compare
BPHYT_RS03280 -0.8 -1.5 mannose-1-phosphate guanylyltransferase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in nutrient experiments