Experiment set4IT041 for Burkholderia phytofirmans PsJN

Compare to:

Min media with glucose

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS25335 +1.3 1.5 hypothetical protein compare
BPHYT_RS29520 +1.2 1.7 hypothetical protein compare
BPHYT_RS03235 +1.2 2.0 enoyl-CoA hydratase compare
BPHYT_RS11810 +1.2 1.6 LysR family transcriptional regulator compare
BPHYT_RS28885 +1.2 2.4 betaine-aldehyde dehydrogenase compare
BPHYT_RS00770 +1.1 1.5 conjugal transfer protein TraC compare
BPHYT_RS31020 +1.0 1.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS25800 +1.0 1.3 sugar ABC transporter permease compare
BPHYT_RS02300 +1.0 1.9 acid shock protein compare
BPHYT_RS08665 +1.0 1.2 hypothetical protein compare
BPHYT_RS29920 +1.0 1.2 hypothetical protein compare
BPHYT_RS04095 +0.9 1.6 SAM-dependent methyltransferase PhcB compare
BPHYT_RS24630 +0.9 1.4 (2Fe-2S)-binding protein compare
BPHYT_RS33765 +0.9 1.3 membrane protein compare
BPHYT_RS22300 +0.9 2.2 hypothetical protein compare
BPHYT_RS28480 +0.9 2.2 hydroxyglutarate oxidase compare
BPHYT_RS03830 +0.9 1.9 hypothetical protein compare
BPHYT_RS35770 +0.9 1.6 glyoxalase compare
BPHYT_RS23455 +0.9 1.2 phosphorylase compare
BPHYT_RS30490 +0.9 0.9 2-haloalkanoic acid dehalogenase compare
BPHYT_RS32470 +0.9 2.0 membrane protein compare
BPHYT_RS08235 +0.9 1.3 nucleoprotein, Hfg, host factor I compare
BPHYT_RS01795 +0.9 5.3 histidine kinase compare
BPHYT_RS24955 +0.9 1.2 cytochrome C peroxidase compare
BPHYT_RS31715 +0.9 3.5 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS03900 +0.9 1.2 phospholipid-binding protein compare
BPHYT_RS18865 +0.9 2.1 flagellar L-ring protein FlgH compare
BPHYT_RS26540 +0.9 1.4 hypothetical protein compare
BPHYT_RS01790 +0.9 7.4 LuxR family transcriptional regulator compare
BPHYT_RS04890 +0.8 1.1 cobalamin biosynthesis protein CobD compare
BPHYT_RS27330 +0.8 0.5 hypothetical protein compare
BPHYT_RS33515 +0.8 6.3 porin compare
BPHYT_RS18860 +0.8 4.1 flagellar P-ring protein FlgI compare
BPHYT_RS28370 +0.8 1.3 peroxidase compare
BPHYT_RS24135 +0.8 1.8 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS11020 +0.8 2.3 transporter compare
BPHYT_RS07350 +0.8 2.4 ABC transporter ATP-binding protein compare
BPHYT_RS27455 +0.8 1.0 rod shape-determining protein MreB compare
BPHYT_RS25095 +0.8 2.6 AraC family transcriptional regulator compare
BPHYT_RS26525 +0.8 1.2 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS00705 +0.8 2.0 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS33045 +0.8 1.5 response regulator receiver protein compare
BPHYT_RS08405 +0.8 1.2 hypothetical protein compare
BPHYT_RS18885 +0.8 4.1 flagellar basal body rod modification protein FlgD compare
BPHYT_RS23185 +0.8 2.2 MFS transporter compare
BPHYT_RS34565 +0.8 1.0 chemotaxis protein compare
BPHYT_RS06915 +0.8 1.6 hypothetical protein compare
BPHYT_RS21025 +0.8 1.2 cation-binding protein compare
BPHYT_RS03455 +0.8 1.9 paraquat-inducible protein A compare
BPHYT_RS05320 +0.8 1.1 beta-lactamase compare
BPHYT_RS18925 +0.8 5.3 RNA polymerase sigma70 compare
BPHYT_RS31960 +0.7 1.8 hypothetical protein compare
BPHYT_RS26450 +0.7 0.9 transcriptional regulator compare
BPHYT_RS12590 +0.7 1.6 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS20715 +0.7 1.2 peptidase compare
BPHYT_RS14255 +0.7 6.3 ABC transporter compare
BPHYT_RS24010 +0.7 1.9 L-histidine ABC transporter, permease component 2 (from data) compare
BPHYT_RS02365 +0.7 1.2 hypothetical protein compare
BPHYT_RS15320 +0.7 1.6 hypothetical protein compare
BPHYT_RS28470 +0.7 1.5 hypothetical protein compare
BPHYT_RS28920 +0.7 1.4 cellulose synthase compare
BPHYT_RS25970 +0.7 0.9 urea amidolyase compare
BPHYT_RS10715 +0.7 1.5 acyl-CoA dehydrogenase compare
BPHYT_RS09620 +0.7 2.2 aminodeoxychorismate lyase compare
BPHYT_RS25980 +0.7 0.9 urea carboxylase compare
BPHYT_RS10475 +0.7 1.7 mammalian cell entry protein compare
BPHYT_RS28245 +0.7 1.4 MFS transporter compare
BPHYT_RS11040 +0.7 1.0 GntR family transcriptional regulator compare
BPHYT_RS14250 +0.7 3.7 glycosyl transferase compare
BPHYT_RS29750 +0.7 2.1 phosphoenolpyruvate phosphomutase compare
BPHYT_RS26040 +0.7 1.5 cysteine hydrolase compare
BPHYT_RS18880 +0.7 5.0 flagellar hook protein FlgE compare
BPHYT_RS14880 +0.7 1.5 integration host factor subunit beta compare
BPHYT_RS26925 +0.7 1.3 NIPSNAP family containing protein compare
BPHYT_RS20000 +0.7 1.6 serine/threonine protein kinase compare
BPHYT_RS31415 +0.7 1.6 amino acid ABC transporter permease compare
BPHYT_RS22640 +0.7 1.4 hydroxyproline-2-epimerase compare
BPHYT_RS09545 +0.7 1.6 peptide methionine sulfoxide reductase compare
BPHYT_RS35650 +0.7 1.5 DSBA oxidoreductase compare
BPHYT_RS15300 +0.7 2.1 hypothetical protein compare
BPHYT_RS24115 +0.7 1.3 epimerase compare
BPHYT_RS27920 +0.7 1.1 tricarballylate utilization protein B compare
BPHYT_RS27520 +0.7 2.8 membrane protein compare
BPHYT_RS30665 +0.6 2.6 peroxidase compare
BPHYT_RS10900 +0.6 2.6 histidine kinase compare
BPHYT_RS34505 +0.6 1.9 hypothetical protein compare
BPHYT_RS27395 +0.6 1.2 N-acetyltransferase GCN5 compare
BPHYT_RS35275 +0.6 1.3 acetyltransferase compare
BPHYT_RS01170 +0.6 1.3 hypothetical protein compare
BPHYT_RS32415 +0.6 2.0 translation elongation factor compare
BPHYT_RS18875 +0.6 3.3 flagellar basal body rod protein FlgF compare
BPHYT_RS18900 +0.6 4.8 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS35245 +0.6 1.5 hypothetical protein compare
BPHYT_RS13395 +0.6 1.4 endoribonuclease L-PSP compare
BPHYT_RS23830 +0.6 1.2 acetyl-CoA hydrolase compare
BPHYT_RS18790 +0.6 4.6 ATP synthase compare
BPHYT_RS12855 +0.6 1.5 hypothetical protein compare
BPHYT_RS07450 +0.6 1.7 histidine kinase compare
BPHYT_RS02725 +0.6 1.3 GntR family transcriptional regulator compare
BPHYT_RS29810 +0.6 1.0 hexapeptide transferase compare
BPHYT_RS23250 +0.6 1.3 hypothetical protein compare
BPHYT_RS03025 +0.6 2.0 methyl-accepting chemotaxis protein compare
BPHYT_RS25820 +0.6 1.1 sugar ABC transporter compare
BPHYT_RS25780 +0.6 0.9 DeoR faimly transcriptional regulator compare
BPHYT_RS27270 +0.6 1.4 photosystem reaction center subunit H compare
BPHYT_RS15800 +0.6 2.1 GntR family transcriptional regulator compare
BPHYT_RS31900 +0.6 1.4 short-chain dehydrogenase/reductase SDR compare
BPHYT_RS36145 +0.6 1.6 hypothetical protein compare
BPHYT_RS30505 +0.6 1.5 ABC transporter permease compare
BPHYT_RS24585 +0.6 1.0 NUDIX hydrolase compare
BPHYT_RS24315 +0.6 1.5 phosphoribosyltransferase compare
BPHYT_RS02100 +0.6 1.1 AsnC family transcriptional regulator compare
BPHYT_RS20105 +0.6 1.6 nitrate ABC transporter substrate-binding protein compare
BPHYT_RS18775 +0.6 4.3 flagellar M-ring protein FliF compare
BPHYT_RS19620 +0.6 2.0 general secretion pathway protein GspH compare
BPHYT_RS25140 +0.6 1.9 hypothetical protein compare
BPHYT_RS18890 +0.6 4.5 flagellar basal body rod protein FlgC compare
BPHYT_RS17640 +0.6 2.0 2-alkenal reductase compare
BPHYT_RS06195 +0.6 1.2 membrane protein compare
BPHYT_RS23370 +0.6 1.2 glycosyl transferase family 1 compare
BPHYT_RS34295 +0.6 0.7 fimbrial protein compare
BPHYT_RS25470 +0.6 0.9 alkylhydroperoxidase compare
BPHYT_RS23270 +0.6 1.0 enoyl-CoA hydratase compare
BPHYT_RS28595 +0.6 0.8 glyoxalase compare
BPHYT_RS18940 +0.6 4.1 flagellar biosynthesis protein FlhA compare
BPHYT_RS19770 +0.6 1.2 ArsR family transcriptional regulator compare
BPHYT_RS09585 +0.6 1.0 hypothetical protein compare
BPHYT_RS03875 +0.6 1.3 dehydrogenase compare
BPHYT_RS20755 +0.6 1.9 fuconate dehydratase compare
BPHYT_RS25130 +0.6 1.8 MFS transporter compare
BPHYT_RS10690 +0.6 1.5 Rieske (2Fe-2S) protein compare
BPHYT_RS01960 +0.5 1.4 cytochrome C compare
BPHYT_RS27030 +0.5 0.9 transcriptional regulator compare
BPHYT_RS24525 +0.5 1.4 2-hydroxyacid dehydrogenase compare
BPHYT_RS10215 +0.5 1.0 sulfate transporter compare
BPHYT_RS34850 +0.5 1.2 acylphosphatase compare
BPHYT_RS30395 +0.5 1.1 small mechanosensitive ion channel protein MscS compare
BPHYT_RS02135 +0.5 1.4 glyoxylate reductase compare
BPHYT_RS12520 +0.5 1.4 nicotinate phosphoribosyltransferase compare
BPHYT_RS30855 +0.5 1.3 sugar ABC transporter substrate-binding protein compare
BPHYT_RS30130 +0.5 1.2 AraC family transcriptional regulator compare
BPHYT_RS07690 +0.5 1.3 AraC family transcriptional regulator compare
BPHYT_RS18945 +0.5 2.6 flagellar biosynthesis protein FlhB compare
BPHYT_RS18870 +0.5 2.8 flagellar basal body rod protein FlgG compare
BPHYT_RS31730 +0.5 2.1 aminotransferase class III compare
BPHYT_RS00725 +0.5 1.4 hypothetical protein compare
BPHYT_RS18855 +0.5 2.9 flagellar rod assembly protein FlgJ compare
BPHYT_RS29805 +0.5 1.5 lysine transporter LysE compare
BPHYT_RS12325 +0.5 1.8 GNAT family acetyltransferase compare
BPHYT_RS11360 +0.5 1.0 hypothetical protein compare
BPHYT_RS19985 +0.5 0.9 CoA-transferase compare
BPHYT_RS05315 +0.5 1.5 hydrolase compare
BPHYT_RS20885 +0.5 1.2 nuclear protein SET compare
BPHYT_RS07935 +0.5 1.2 Rrf2 family transcriptional regulator compare
BPHYT_RS03265 +0.5 1.6 hypothetical protein compare
BPHYT_RS22875 +0.5 2.0 hypothetical protein compare
BPHYT_RS30785 +0.5 2.0 alcohol dehydrogenase compare
BPHYT_RS28680 +0.5 1.1 porin compare
BPHYT_RS03930 +0.5 2.0 3-hydroxy-3-methylglutaryl-CoA lyase compare
BPHYT_RS35660 +0.5 2.3 membrane protein compare
BPHYT_RS23705 +0.5 4.4 hypothetical protein compare
BPHYT_RS09600 +0.5 1.3 hypothetical protein compare
BPHYT_RS36415 +0.5 1.5 hypothetical protein compare
BPHYT_RS05825 +0.5 1.7 hypothetical protein compare
BPHYT_RS29540 +0.5 0.9 aldolase compare
BPHYT_RS14005 +0.5 1.4 ABC transporter compare
BPHYT_RS27210 +0.5 1.4 alcohol dehydrogenase compare
BPHYT_RS11665 +0.5 1.8 ribonuclease compare
BPHYT_RS04060 +0.5 1.6 glycosyl transferase compare
BPHYT_RS11995 +0.5 2.1 flagellar hook protein FlgE compare
BPHYT_RS35800 +0.5 1.4 TetR family transcriptional regulator compare
BPHYT_RS36480 +0.5 1.1 hypothetical protein compare
BPHYT_RS31630 +0.5 1.8 hypothetical protein compare
BPHYT_RS18810 +0.5 3.4 flagellar motor switch protein FliM compare
BPHYT_RS07585 +0.5 1.6 N-formylglutamate deformylase (EC 3.5.1.68) (from data) compare
BPHYT_RS28350 +0.5 0.8 fatty acid desaturase compare
BPHYT_RS22030 +0.5 1.9 peptide ABC transporter ATP-binding protein compare
BPHYT_RS18830 +0.5 3.7 flagellar biosynthesis protein FliQ compare
BPHYT_RS18895 +0.5 2.0 flagellar basal body rod protein FlgB compare
BPHYT_RS29550 +0.5 1.3 RND transporter compare
BPHYT_RS23910 +0.5 1.2 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS07380 +0.5 1.6 membrane protein compare
BPHYT_RS21725 +0.5 1.0 taurine ABC transporter substrate-binding protein compare
BPHYT_RS34700 +0.5 1.6 arsenate reductase compare
BPHYT_RS21905 +0.5 0.6 IclR family transcriptional regulator compare
BPHYT_RS01435 +0.5 4.5 LysR family transcriptional regulator compare
BPHYT_RS27425 +0.5 1.5 C4-dicarboxylate ABC transporter compare
BPHYT_RS18935 +0.5 3.4 flagellar biosynthesis regulator FlhF compare
BPHYT_RS28000 +0.5 0.7 permease compare
BPHYT_RS10850 +0.5 0.9 LysR family transcriptional regulator compare
BPHYT_RS03320 +0.5 1.7 lactoylglutathione lyase compare
BPHYT_RS20995 +0.5 1.2 NUDIX hydrolase compare
BPHYT_RS09355 +0.5 0.8 LysR family transcriptional regulator compare
BPHYT_RS25500 +0.5 0.8 hypothetical protein compare
BPHYT_RS18795 +0.5 2.0 flagellar export protein FliJ compare
BPHYT_RS09825 +0.5 1.3 Fe-S protein compare
BPHYT_RS24235 +0.5 2.1 4-hydroxyacetophenone monooxygenase compare
BPHYT_RS23480 +0.5 1.5 hypothetical protein compare
BPHYT_RS19915 +0.5 1.7 hemolysin D compare
BPHYT_RS22060 +0.5 4.1 amino acid transporter compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in nutrient experiments