Experiment set4IT040 for Rhodospirillum rubrum S1H

Compare to:

L-Malic Acid carbon source and N2; anaerobic; high light

200 most important genes:

  gene name fitness t score description  
Rru_A1620 -5.5 -3.6 hypothetical protein (NCBI) compare
Rru_A0468 -4.8 -5.3 Acetolactate synthase, small subunit (NCBI) compare
Rru_A2886 -4.5 -30.9 Carbamoyl-phosphate synthase, large subunit, glutamine-dependent (NCBI) compare
Rru_A3594 -4.5 -5.5 Histidine biosynthesis protein HisF (NCBI) compare
Rru_A1897 -4.4 -11.6 Indole-3-glycerol-phosphate synthase (NCBI) compare
Rru_A2885 -4.4 -28.4 Carbamoyl-phosphate synthase, small subunit (NCBI) compare
Rru_A2981 -4.4 -12.3 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide (NCBI) compare
Rru_A1896 -4.4 -14.0 Anthranilate phosphoribosyl transferase (NCBI) compare
Rru_A1105 -4.3 -13.5 tRNA synthetase, class II (G, H, P and S) (NCBI) compare
Rru_A3751 -4.3 -21.5 Argininosuccinate synthase (NCBI) compare
Rru_A1021 -4.3 -10.3 Sigma 32 (RpoH) (NCBI) compare
Rru_A1928 -4.3 -22.9 Yeast 2-isopropylmalate synthase (NCBI) compare
Rru_A3266 -4.2 -18.4 Homoserine O-acetyltransferase (NCBI) compare
Rru_A3425 -4.2 -12.5 Phosphoribosylanthranilate isomerase (NCBI) compare
Rru_A0469 -4.2 -22.4 Ketol-acid reductoisomerase (NCBI) compare
Rru_A2771 -4.2 -6.7 Histidinol dehydrogenase (NCBI) compare
Rru_A3264 -4.1 -11.9 Histidinol-phosphate aminotransferase (NCBI) compare
Rru_A1675 -4.1 -22.2 Cytochrome c assembly protein (NCBI) compare
Rru_A1530 -4.1 -27.5 5,10-methylenetetrahydrofolate reductase (NCBI) compare
Rru_A3267 -4.1 -13.3 Methionine biosynthesis MetW (NCBI) compare
Rru_A3428 -4.0 -14.2 Tryptophan synthase (NCBI) compare
Rru_A3162 -4.0 -21.6 Prephenate dehydratase (NCBI) compare
Rru_A1827 -4.0 -16.3 Glycine hydroxymethyltransferase (NCBI) compare
Rru_A3277 -4.0 -8.2 Acetylornithine and succinylornithine aminotransferase (NCBI) compare
Rru_A0619 -4.0 -3.3 Magnesium protoporphyrin O-methyltransferase (NCBI) compare
Rru_A2980 -4.0 -18.5 Chlorophyllide reductase iron protein subunit X (NCBI) compare
Rru_A1191 -3.9 -17.9 3-isopropylmalate dehydrogenase (NCBI) compare
Rru_A2983 -3.9 -3.4 Polyprenyl synthetase (NCBI) compare
Rru_A3548 -3.9 -23.3 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase (NCBI) compare
Rru_A1189 -3.9 -19.2 3-isopropylmalate dehydratase large subunit region (NCBI) compare
Rru_A1854 -3.8 -10.6 Pyridoxal phosphate biosynthetic protein PdxJ (NCBI) compare
Rru_A2979 -3.8 -16.5 Chlorophyllide reductase subunit Y (NCBI) compare
Rru_A1239 -3.8 -3.5 Glutamate 5-kinase, ProB-related (NCBI) compare
Rru_A2975 -3.8 -20.8 Photosynthetic reaction centre protein L subunit (NCBI) compare
Rru_A0621 -3.8 -24.5 Magnesium-chelatase, subunit H (NCBI) compare
Rru_A2507 -3.7 -21.8 Orotate phosphoribosyl transferase (NCBI) compare
Rru_A2974 -3.7 -16.6 Photosynthetic reaction centre M subunit (NCBI) compare
Rru_A1190 -3.7 -2.5 3-isopropylmalate dehydratase small subunit region (NCBI) compare
Rru_A0432 -3.7 -7.9 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI) compare
Rru_A1786 -3.7 -22.4 Dihydroxy-acid dehydratase (NCBI) compare
Rru_A0617 -3.7 -9.4 Photosynthetic reaction center, H-chain (NCBI) compare
Rru_A1895 -3.7 -2.0 Glutamine amidotransferase of anthranilate synthase (NCBI) compare
Rru_A3276 -3.6 -4.8 Ornithine carbamoyltransferase (NCBI) compare
Rru_A0467 -3.6 -18.0 Acetolactate synthase, large subunit, biosynthetic type (NCBI) compare
Rru_A1593 -3.6 -15.5 Peptidase M50, putative membrane-associated zinc metallopeptidase (NCBI) compare
Rru_A3380 -3.6 -5.1 hypothetical protein (NCBI) compare
Rru_A3214 -3.6 -16.5 O-succinylhomoserine sulfhydrylase (NCBI) compare
Rru_A0622 -3.6 -14.6 Light-independent protochlorophyllide reductase, B subunit (NCBI) compare
Rru_A3397 -3.6 -1.7 hypothetical protein (NCBI) compare
Rru_A3427 -3.6 -17.7 Tryptophan synthase, beta chain (NCBI) compare
Rru_A3191 -3.5 -17.2 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A0613 -3.5 -10.2 Bacteriochlorophyll 4-vinyl reductase (NCBI) compare
Rru_A0620 -3.5 -16.8 Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI) compare
Rru_A0624 -3.5 -16.7 2-vinyl bacteriochlorophyllide hydratase (NCBI) compare
Rru_A0514 -3.5 -10.9 Dihydroorotate dehydrogenase 2 (NCBI) compare
Rru_A3227 -3.5 -11.9 conserved hypothetical protein, potential methyltransferase (NCBI) compare
Rru_A0493 -3.4 -17.6 Phytoene desaturase (NCBI) compare
Rru_A2167 -3.4 -7.4 Phosphoribosylformylglycinamidine cyclo-ligase (NCBI) compare
Rru_A2497 -3.3 -9.2 Peptide chain release factor 3 (NCBI) compare
Rru_A2936 -3.3 -9.5 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A2978 -3.3 -11.9 Chlorophyllide reductase subunit Z (NCBI) compare
Rru_A0058 -3.3 -1.5 Dihydrokaempferol 4-reductase (NCBI) compare
Rru_A1883 -3.3 -6.3 Magnesium and cobalt transport protein CorA (NCBI) compare
Rru_A0485 -3.3 -8.8 Magnesium chelatase ATPase subunit I (NCBI) compare
Rru_A0574 -3.3 -6.4 Carboxylyase-related protein (NCBI) compare
Rru_A0486 -3.3 -16.1 von Willebrand factor, type A (NCBI) compare
Rru_A0627 -3.2 -14.0 Bacteriochlorophyll/chlorophyll synthetase (NCBI) compare
Rru_A1527 -3.2 -9.2 ABC transporter component (NCBI) compare
Rru_A0032 -3.2 -10.9 TPR repeat (NCBI) compare
Rru_A0770 -3.2 -18.4 Peptidase M23B (NCBI) compare
Rru_A1695 -3.2 -9.2 Protein of unknown function DUF411 (NCBI) compare
Rru_A2265 -3.1 -15.7 Electron transfer flavoprotein-ubiquinone oxidoreductase (NCBI) compare
Rru_A0618 -3.1 -15.2 PUCC protein (NCBI) compare
Rru_A0556 -3.1 -17.2 Formyltetrahydrofolate deformylase (NCBI) compare
Rru_A2982 -3.0 -12.5 O-methyltransferase, family 2 (NCBI) compare
Rru_A0494 -3.0 -9.4 Squalene/phytoene synthase (NCBI) compare
Rru_A3596 -3.0 -5.0 Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (NCBI) compare
Rru_A2182 -3.0 -10.1 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A1691 -3.0 -12.5 Spermine synthase (NCBI) compare
Rru_A2286 -3.0 -18.2 Nitrogenase MoFe cofactor biosynthesis protein NifE (NCBI) compare
Rru_A1012 -3.0 -17.3 Nitrogenase molybdenum-iron protein beta chain (NCBI) compare
Rru_A1837 -3.0 -7.8 Porphobilinogen synthase (NCBI) compare
Rru_A2267 -3.0 -12.2 Electron transfer flavoprotein beta-subunit (NCBI) compare
Rru_A2266 -3.0 -18.5 Electron transfer flavoprotein (NCBI) compare
Rru_A1011 -3.0 -16.2 Nitrogenase molybdenum-iron protein alpha chain (NCBI) compare
Rru_A0670 -2.9 -4.0 Cobalbumin biosynthesis enzyme (NCBI) compare
Rru_A0614 -2.9 -10.4 hypothetical protein (NCBI) compare
Rru_A3384 -2.9 -7.4 Precorrin-4 C11-methyltransferase region (NCBI) compare
Rru_A3382 -2.8 -9.6 Cobalamin biosynthesis protein CbiB (NCBI) compare
Rru_A1366 -2.8 -20.6 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A2269 -2.8 -7.0 Pyruvate carboxyltransferase (NCBI) compare
Rru_A2181 -2.8 -19.0 NAD(P) transhydrogenase, beta subunit (NCBI) compare
Rru_A0615 -2.8 -3.8 photosynthetic complex assembly protein (NCBI) compare
Rru_A2525 -2.8 -17.1 Peptidase U32 (NCBI) compare
Rru_A2772 -2.7 -3.0 ATP phosphoribosyltransferase (NCBI) compare
Rru_A1010 -2.7 -15.2 Nitrogenase iron protein (NCBI) compare
Rru_A2115 -2.7 -12.3 Phosphoglucomutase/phosphomannomutase (NCBI) compare
Rru_A2987 -2.7 -9.4 hypothetical protein (NCBI) compare
Rru_A0397 -2.6 -5.5 Argininosuccinate lyase (NCBI) compare
Rru_A3202 -2.6 -9.7 DNA topoisomerase (NCBI) compare
Rru_A2524 -2.6 -16.1 Peptidase U32 (NCBI) compare
Rru_A0993 -2.6 -10.6 Transcriptional Regulator, NifA, Fis Family (NCBI) compare
Rru_A0404 -2.6 -18.6 Amidophosphoribosyl transferase (NCBI) compare
Rru_A0616 -2.6 -10.0 photosynthetic complex assembly protein (NCBI) compare
Rru_A1678 -2.5 -6.2 Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI) compare
Rru_A2264 -2.5 -8.0 ferredoxin (NCBI) compare
Rru_A2512 -2.5 -7.9 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI) compare
Rru_A3739 -2.5 -5.7 hypothetical protein (NCBI) compare
Rru_A3773 -2.5 -1.8 CBS domain protein (NCBI) compare
Rru_A3558 -2.5 -4.9 Protein of unknown function UPF0005 (NCBI) compare
Rru_A2183 -2.5 -11.6 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A2411 -2.5 -13.3 Aminotransferase, class I and II (NCBI) compare
Rru_A1435 -2.4 -7.3 Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) compare
Rru_A0006 -2.4 -4.1 Plasmid maintenance system antidote protein (NCBI) compare
Rru_A1019 -2.4 -4.5 FAD dependent oxidoreductase (NCBI) compare
Rru_A0596 -2.4 -1.6 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype (NCBI) compare
Rru_A1048 -2.4 -3.7 Protein of unknown function DUF465 (NCBI) compare
Rru_A1804 -2.4 -9.5 N-acetyltransferase (NCBI) compare
Rru_A2989 -2.4 -7.1 Precorrin-3B C17-methyltransferase region (NCBI) compare
Rru_A2285 -2.4 -1.5 Nitrogenase molybdenum-iron cofactor biosynthesis protein (NCBI) compare
Rru_A1798 -2.3 -14.1 Type I secretion outer membrane protein, TolC (NCBI) compare
Rru_A2988 -2.3 -5.9 Precorrin-6X reductase (NCBI) compare
Rru_A1437 -2.3 -9.2 Sodium:dicarboxylate symporter (NCBI) compare
Rru_A1607 -2.3 -13.4 4-alpha-glucanotransferase (NCBI) compare
Rru_A2990 -2.3 -9.7 precorrin-2 C20-methyltransferase (NCBI) compare
Rru_A1111 -2.3 -12.3 Pseudouridine synthase, RluD (NCBI) compare
Rru_A2370 -2.3 -1.2 GCN5-related N-acetyltransferase (NCBI) compare
Rru_A2847 -2.2 -3.4 Transcriptional regulators, TraR/DksA family (NCBI) compare
Rru_A1085 -2.2 -5.6 Metallophosphoesterase (NCBI) compare
Rru_A0394 -2.2 -3.2 Amino-acid N-acetyltransferase (NCBI) compare
Rru_A2244 -2.2 -13.2 Glycogen/starch/alpha-glucan phosphorylase (NCBI) compare
Rru_A2986 -2.2 -8.8 Fumarate reductase/succinate dehydrogenase flavoprotein-like (NCBI) compare
Rru_A0181 -2.2 -8.6 hypothetical protein (NCBI) compare
Rru_A0625 -2.2 -2.5 hypothetical protein (NCBI) compare
Rru_A3571 -2.2 -5.8 Glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI) compare
Rru_A3167 -2.1 -10.2 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A2085 -2.1 -2.6 Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI) compare
Rru_A0994 -2.1 -4.9 Nitrogenase cofactor biosynthesis protein NifB (NCBI) compare
Rru_A3052 -2.1 -8.0 hypothetical protein (NCBI) compare
Rru_A3424 -2.1 -2.0 Orotidine-5'-phosphate decarboxylase (NCBI) compare
Rru_A0637 -2.1 -2.9 hypothetical protein (NCBI) compare
Rru_A3169 -2.0 -8.2 ABC transporter component (NCBI) compare
Rru_A1890 -2.0 -5.0 hypothetical protein (NCBI) compare
Rru_A3009 -2.0 -7.5 Aminotransferase class-III (NCBI) compare
Rru_A2486 -2.0 -5.5 Glucokinase (NCBI) compare
Rru_A3359 -2.0 -9.5 Cobyrinic acid a,c-diamide synthase CbiA (NCBI) compare
Rru_A1436 -2.0 -5.5 Histidine Kinase (NCBI) compare
Rru_A2549 -2.0 -7.4 HAD-superfamily hydrolase subfamily IIB (NCBI) compare
Rru_A1677 -2.0 -6.0 Signal transduction histidine kinase, nitrogen specific, NtrB (NCBI) compare
Rru_A2246 -2.0 -13.4 Glucose-1-phosphate adenylyltransferase (NCBI) compare
Rru_A3165 -2.0 -4.5 Histidinol-phosphate phosphatase, putative, inositol monophosphatase (NCBI) compare
Rru_A2469 -1.9 -6.1 FeoA (NCBI) compare
Rru_A2029 -1.9 -2.2 Serine O-acetyltransferase (NCBI) compare
Rru_B0049 -1.9 -2.3 dTDP-4-dehydrorhamnose reductase (NCBI) compare
Rru_A3190 -1.9 -2.4 Aspartate carbamoyltransferase (NCBI) compare
Rru_A0644 -1.9 -3.0 hypothetical protein (NCBI) compare
Rru_A2161 -1.9 -17.1 Polyphosphate kinase (NCBI) compare
Rru_A3539 -1.9 -8.2 GlnB (protein PII) uridylyltransferase, GlnD (NCBI) compare
Rru_A2992 -1.9 -4.8 Precorrin-6Y C5,15-methyltransferase (decarboxylating) (NCBI) compare
Rru_A3168 -1.9 -9.0 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A2985 -1.9 -10.0 Hydroxyneurosporene synthase (NCBI) compare
Rru_A3166 -1.9 -10.7 extracellular solute-binding protein, family 5 (NCBI) compare
Rru_A2478 -1.8 -11.0 ArgK protein (NCBI) compare
Rru_A1047 -1.8 -7.4 6-phosphofructokinase (NCBI) compare
Rru_A2110 -1.8 -8.6 ATP-dependent Clp protease adaptor protein ClpS (NCBI) compare
Rru_A2952 -1.8 -4.4 Methyltransferase small (NCBI) compare
Rru_A0207 -1.8 -3.5 Cobalt chelatase, CobT subunit (NCBI) compare
Rru_A2100 -1.7 -6.9 Protein of unknown function DUF81 (NCBI) compare
Rru_A0629 -1.7 -9.2 Geranylgeranyl reductase (NCBI) compare
Rru_A2271 -1.7 -2.9 HesB/YadR/YfhF (NCBI) compare
Rru_A0291 -1.7 -2.1 hypothetical protein (NCBI) compare
Rru_A3492 -1.7 -10.8 Periplasmic Sensor Hybrid Histidine Kinase (NCBI) compare
Rru_A2193 -1.7 -11.2 Abc1 protein (NCBI) compare
Rru_A1696 -1.7 -3.7 permease (NCBI) compare
Rru_A0683 -1.7 -0.6 3-deoxy-7-phosphoheptulonate synthase (NCBI) compare
Rru_A2234 -1.7 -7.1 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A3533 -1.6 -7.9 hypothetical protein (NCBI) compare
Rru_A1849 -1.6 -2.0 Recombination protein O, RecO (NCBI) compare
Rru_A3366 -1.6 -10.4 Cobaltochelatase, CobN subunit (NCBI) compare
Rru_A0671 -1.6 -5.7 cobalamin synthesis CobW protein (NCBI) compare
Rru_A2363 -1.6 -8.2 Endonuclease/exonuclease/phosphatase (NCBI) compare
Rru_A1867 -1.6 -2.3 Protein of unknown function DUF583 (NCBI) compare
Rru_A3547 -1.5 -4.0 hypothetical protein (NCBI) compare
Rru_A1841 -1.5 -1.8 Flavin reductase-like, FMN-binding (NCBI) compare
Rru_A3783 -1.5 -8.9 tRNA pseudouridine synthase B (NCBI) compare
Rru_A3770 -1.5 -7.1 tRNA-i(6)A37 modification enzyme MiaB (NCBI) compare
Rru_A2513 -1.5 -8.4 Acetyl-CoA hydrolase/transferase (NCBI) compare
Rru_A3642 -1.5 -2.8 Negative regulator of class I heat shock protein (NCBI) compare
Rru_A1552 -1.5 -3.1 Peptidase S16, ATP-dependent protease La (NCBI) compare
Rru_A2400 -1.4 -10.0 Ribulose-bisphosphate carboxylase, form II (NCBI) compare
Rru_A0010 -1.4 -2.6 Sigma-54 (RpoN) (NCBI) compare
Rru_A1868 -1.4 -9.6 Peptidase M23B (NCBI) compare
Rru_A1529 -1.4 -5.0 Transcriptional Regulator, ArsR family (NCBI) compare
Rru_A2496 -1.4 -2.0 Polysaccharide biosynthesis protein (NCBI) compare
Rru_A1855 -1.4 -4.4 hypothetical protein (NCBI) compare
Rru_A3766 -1.4 -5.6 Transcriptional Regulator, MucR family (NCBI) compare
Rru_A2421 -1.4 -3.5 N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) compare
Rru_A3549 -1.4 -7.1 Cobyric acid synthase CobQ (NCBI) compare
Rru_A3282 -1.4 -5.7 hypothetical protein (NCBI) compare
Rru_A3322 -1.4 -3.5 Transcriptional Regulator, Crp/Fnr family (NCBI) compare


Specific Phenotypes

For 3 genes in this experiment

For anaerboic nitrogen source N2 in Rhodospirillum rubrum S1H

For anaerboic nitrogen source N2 across organisms