Experiment set4IT040 for Methanococcus maripaludis JJ

Compare to:

control, 1x iron with casamino acids and vitamins, formate media

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00235 -6.1 -24.7 hypothetical protein compare
MMJJ_RS04200 -5.1 -9.0 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS03895 -4.6 -6.2 hydrogenase expression/formation protein HypE compare
MMJJ_RS06860 -4.6 -6.3 hypothetical protein compare
MMJJ_RS05450 -4.6 -18.6 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS08320 -4.4 -4.2 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS05995 -4.4 -3.5 ATP-binding cassette domain-containing protein compare
MMJJ_RS04485 -4.3 -10.4 riboflavin synthase compare
MMJJ_RS03840 -4.3 -4.2 DHH family phosphoesterase compare
MMJJ_RS05445 -4.2 -3.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS07350 -4.2 -4.1 4Fe-4S binding protein compare
MMJJ_RS07380 -4.0 -11.3 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS03760 -4.0 -5.4 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS03865 -4.0 -1.9 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS04050 -3.9 -3.0 dihydroneopterin aldolase family protein compare
MMJJ_RS08250 -3.9 -9.2 hydrogenase maturation peptidase HycI compare
MMJJ_RS03055 -3.8 -3.9 hypothetical protein compare
MMJJ_RS03110 -3.8 -5.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS05535 -3.7 -16.1 hypothetical protein compare
MMJJ_RS00275 -3.7 -3.3 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS04475 -3.7 -4.9 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS05575 -3.7 -6.7 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS03270 -3.7 -3.7 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS05650 -3.6 -4.9 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS05330 -3.6 -3.4 DNA polymerase II large subunit compare
MMJJ_RS02045 -3.6 -4.3 molybdenum cofactor guanylyltransferase compare
MMJJ_RS06240 -3.6 -4.5 dihydropteroate synthase-like protein compare
MMJJ_RS05260 -3.6 -9.0 ATP-grasp domain-containing protein compare
MMJJ_RS07665 -3.5 -23.9 formate dehydrogenase subunit alpha compare
MMJJ_RS07785 -3.5 -4.1 fumarate reductase subunit A compare
MMJJ_RS05610 -3.5 -6.2 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS08625 -3.5 -8.6 magnesium/cobalt transporter CorA compare
MMJJ_RS03670 -3.5 -5.7 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS01935 -3.5 -6.0 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS06725 -3.4 -14.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS01880 -3.3 -3.7 RlmE family RNA methyltransferase compare
MMJJ_RS06840 -3.3 -5.4 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06255 -3.3 -9.2 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS03125 -3.3 -5.5 GMC oxidoreductase compare
MMJJ_RS06695 -3.2 -4.6 amidohydrolase compare
MMJJ_RS08095 -3.2 -6.4 cobyric acid synthase CobQ compare
MMJJ_RS05620 -3.2 -6.3 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS02935 -3.2 -5.0 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS07950 -3.1 -4.0 4Fe-4S binding protein compare
MMJJ_RS01600 -3.1 -3.9 radical SAM protein compare
MMJJ_RS03065 -3.1 -14.4 CBS domain-containing protein compare
MMJJ_RS07670 -3.1 -19.3 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS06180 -3.1 -3.9 tryptophan--tRNA ligase compare
MMJJ_RS06490 -3.0 -4.3 methanogenesis marker 2 protein compare
MMJJ_RS08020 -3.0 -10.3 nucleotidyltransferase domain-containing protein compare
MMJJ_RS07705 -3.0 -4.7 GTP-binding protein EngB compare
MMJJ_RS06875 -3.0 -3.6 hypothetical protein compare
MMJJ_RS04685 -3.0 -10.1 carbamoyltransferase HypF compare
MMJJ_RS08330 -3.0 -4.5 SufD family Fe-S cluster assembly protein compare
MMJJ_RS07000 -3.0 -3.0 TrkH family potassium uptake protein compare
MMJJ_RS03615 -3.0 -3.6 cobalt-precorrin-8 methylmutase compare
MMJJ_RS04790 -3.0 -6.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS08080 -3.0 -12.3 TIGR00300 family protein compare
MMJJ_RS01750 -3.0 -3.5 ferrous iron transport protein A compare
MMJJ_RS07655 -3.0 -14.3 hypothetical protein compare
MMJJ_RS03095 -2.9 -3.4 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS03620 -2.9 -6.8 DUF2097 domain-containing protein compare
MMJJ_RS01810 -2.9 -2.7 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06040 -2.9 -5.9 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03150 -2.9 -7.5 2-phospho-L-lactate transferase compare
MMJJ_RS06915 -2.9 -14.5 helix-turn-helix domain-containing protein compare
MMJJ_RS04155 -2.9 -8.0 hypothetical protein compare
MMJJ_RS08055 -2.9 -7.4 methanogenesis marker 14 protein compare
MMJJ_RS03295 -2.8 -17.0 PHP domain-containing protein compare
MMJJ_RS02090 -2.8 -6.7 tyramine--L-glutamate ligase compare
MMJJ_RS01865 -2.8 -7.3 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS03820 -2.8 -4.9 hydrogenase formation protein HypD compare
MMJJ_RS00570 -2.8 -1.9 ribonuclease P compare
MMJJ_RS02200 -2.8 -9.7 chorismate pyruvate-lyase family protein compare
MMJJ_RS01755 -2.7 -3.6 ferrous iron transport protein B compare
MMJJ_RS06785 -2.7 -8.7 RNA ligase partner protein compare
MMJJ_RS07245 -2.7 -6.0 amidohydrolase family protein compare
MMJJ_RS00580 -2.7 -2.8 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS06625 -2.7 -3.2 pyruvate synthase subunit PorB compare
MMJJ_RS03200 -2.7 -3.7 uroporphyrinogen-III synthase compare
MMJJ_RS05950 -2.6 -3.7 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS07660 -2.6 -13.2 carbonic anhydrase compare
MMJJ_RS04800 -2.6 -7.6 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS00520 -2.6 -6.7 PDGLE domain-containing protein compare
MMJJ_RS06185 -2.6 -6.5 cobalamin biosynthesis protein compare
MMJJ_RS04995 -2.6 -7.6 Tfx family DNA-binding protein compare
MMJJ_RS03875 -2.6 -5.5 CBS domain-containing protein compare
MMJJ_RS04655 -2.6 -7.0 FAD-dependent oxidoreductase compare
MMJJ_RS06155 -2.6 -6.2 phosphatidylglycerophosphatase A compare
MMJJ_RS03005 -2.6 -4.3 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS03830 -2.5 -10.5 CBS domain-containing protein compare
MMJJ_RS04675 -2.5 -8.2 thiamine pyrophosphate-binding protein compare
MMJJ_RS02920 -2.5 -2.7 30S ribosomal protein S27ae compare
MMJJ_RS05930 -2.5 -2.3 cell division protein SepF compare
MMJJ_RS06805 -2.5 -3.9 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS05225 -2.5 -2.4 Gar1/Naf1 family protein compare
MMJJ_RS00475 -2.5 -3.3 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS05810 -2.5 -8.8 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS06225 -2.5 -2.6 adenosylmethionine decarboxylase compare
MMJJ_RS08000 -2.4 -9.5 HesA/MoeB/ThiF family protein compare
MMJJ_RS07725 -2.4 -6.7 DNA primase DnaG compare
MMJJ_RS00270 -2.4 -3.2 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS03660 -2.4 -4.6 DUF447 family protein compare
MMJJ_RS08340 -2.4 -3.8 archaeoflavoprotein AfpA compare
MMJJ_RS02040 -2.4 -3.2 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS05935 -2.4 -3.3 Era-like GTP-binding protein compare
MMJJ_RS08005 -2.4 -13.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS06250 -2.4 -3.8 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS08065 -2.4 -3.6 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS03060 -2.4 -2.7 methanogenesis marker 7 protein compare
MMJJ_RS08840 -2.3 -5.0 calcium/sodium antiporter compare
MMJJ_RS00195 -2.3 -4.4 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS05655 -2.3 -7.2 HisA/HisF family protein compare
MMJJ_RS04520 -2.3 -5.6 coenzyme F430 synthase compare
MMJJ_RS01415 -2.3 -2.8 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS00215 -2.3 -3.4 CCA tRNA nucleotidyltransferase compare
MMJJ_RS03580 -2.3 -5.1 TIGR00303 family protein compare
MMJJ_RS06110 -2.3 -3.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS05360 -2.3 -6.5 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS03115 -2.3 -5.4 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS06010 -2.3 -6.4 hypothetical protein compare
MMJJ_RS04010 -2.3 -7.0 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS06835 -2.3 -10.7 4Fe-4S binding protein compare
MMJJ_RS01565 -2.3 -6.4 TIGR00267 family protein compare
MMJJ_RS03785 -2.2 -3.5 hypothetical protein compare
MMJJ_RS04670 -2.2 -6.3 DUF2117 domain-containing protein compare
MMJJ_RS06705 -2.2 -5.3 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS01345 -2.2 -4.6 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS04985 -2.2 -4.0 glutamyl-tRNA reductase compare
MMJJ_RS06700 -2.2 -5.7 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS04615 -2.2 -5.3 methanogenesis marker 3 protein compare
MMJJ_RS00265 -2.2 -8.3 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS03965 -2.2 -2.6 DNA-directed RNA polymerase subunit L compare
MMJJ_RS07980 -2.2 -11.1 biotin synthase BioB compare
MMJJ_RS01410 -2.2 -6.0 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS05375 -2.2 -14.0 radical SAM protein compare
MMJJ_RS01690 -2.1 -3.6 methanogenesis marker 12 protein compare
MMJJ_RS07190 -2.1 -4.4 RtcB family protein compare
MMJJ_RS00050 -2.1 -11.1 AAA family ATPase compare
MMJJ_RS01475 -2.1 -2.3 signal recognition particle-docking protein FtsY compare
MMJJ_RS03630 -2.1 -10.5 AMP phosphorylase compare
MMJJ_RS08535 -2.1 -3.7 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS00075 -2.1 -11.3 AAA family ATPase compare
MMJJ_RS00425 -2.1 -3.9 hypothetical protein compare
MMJJ_RS00530 -2.1 -11.6 cobalt ECF transporter T component CbiQ compare
MMJJ_RS00355 -2.0 -2.7 ribonuclease P protein component 4 compare
MMJJ_RS06865 -2.0 -2.9 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS06485 -2.0 -3.9 phosphoglycerate kinase compare
MMJJ_RS00070 -2.0 -4.2 CooT family nickel-binding protein compare
MMJJ_RS09135 -2.0 -8.6 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS05380 -2.0 -1.3 hypothetical protein compare
MMJJ_RS08795 -2.0 -2.9 phosphoglucosamine mutase compare
MMJJ_RS06510 -2.0 -3.1 LL-diaminopimelate aminotransferase compare
MMJJ_RS06750 -2.0 -2.5 homoaconitase large subunit compare
MMJJ_RS03190 -2.0 -2.5 phosphopyruvate hydratase compare
MMJJ_RS06270 -2.0 -8.6 dethiobiotin synthase compare
MMJJ_RS00645 -2.0 -9.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS09190 -2.0 -2.4 tryptophan synthase subunit beta compare
MMJJ_RS08855 -2.0 -5.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS04730 -2.0 -3.3 tyrosine decarboxylase MfnA compare
MMJJ_RS05190 -1.9 -7.4 gamma carbonic anhydrase family protein compare
MMJJ_RS06380 -1.9 -3.3 signal recognition particle protein Srp54 compare
MMJJ_RS06390 -1.9 -1.7 NADPH-dependent F420 reductase compare
MMJJ_RS07345 -1.9 -5.5 homocysteine biosynthesis protein compare
MMJJ_RS04975 -1.9 -2.3 glycosyltransferase family 4 protein compare
MMJJ_RS07995 -1.9 -6.3 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS04875 -1.9 -2.1 tRNA-Lys compare
MMJJ_RS01830 -1.9 -4.2 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS07410 -1.9 -3.5 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS00450 -1.9 -1.8 DUF126 domain-containing protein compare
MMJJ_RS08660 -1.9 -3.7 acetylornithine transaminase compare
MMJJ_RS03230 -1.9 -4.3 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS07720 -1.9 -2.7 UPF0058 family protein compare
MMJJ_RS06905 -1.9 -2.5 hypothetical protein compare
MMJJ_RS05295 -1.9 -7.2 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS05065 -1.9 -4.2 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS03815 -1.8 -2.0 nascent polypeptide-associated complex protein compare
MMJJ_RS06220 -1.8 -5.1 polyamine aminopropyltransferase compare
MMJJ_RS08620 -1.8 -3.2 DUF373 family protein compare
MMJJ_RS07635 -1.8 -10.3 response regulator transcription factor compare
MMJJ_RS07640 -1.8 -14.7 cache domain-containing protein compare
MMJJ_RS07840 -1.8 -2.5 Glu-tRNA(Gln) amidotransferase subunit GatD compare
MMJJ_RS03800 -1.8 -9.7 aldolase compare
MMJJ_RS07155 -1.8 -7.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS05155 -1.8 -4.4 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS00515 -1.8 -10.4 cobalt transporter CbiM compare
MMJJ_RS04110 -1.8 -4.5 hypothetical protein compare
MMJJ_RS06855 -1.8 -2.5 DUF2104 domain-containing protein compare
MMJJ_RS00060 -1.8 -12.0 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS06030 -1.8 -3.8 4Fe-4S binding protein compare
MMJJ_RS05720 -1.8 -2.8 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS08585 -1.8 -7.0 M42 family metallopeptidase compare
MMJJ_RS00205 -1.8 -4.6 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS08155 -1.8 -2.8 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS09375 -1.7 -1.5 hypothetical protein compare
MMJJ_RS00035 -1.7 -12.4 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS00045 -1.7 -10.5 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS00560 -1.7 -2.5 homoisocitrate dehydrogenase compare
MMJJ_RS00550 -1.7 -7.5 AIR synthase-related protein compare
MMJJ_RS06730 -1.7 -5.6 ATP-binding cassette domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in iron experiments

For iron Iron (II) chloride tetrahydrate across organisms