Experiment set4IT040 for Burkholderia phytofirmans PsJN

Compare to:

Defined media with casamino acids

200 most important genes:

  gene name fitness t score description  
BPHYT_RS02610 -6.9 -4.8 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS13705 -6.2 -4.3 chorismate synthase compare
BPHYT_RS18320 -5.7 -13.8 orotate phosphoribosyltransferase compare
BPHYT_RS09515 -5.7 -3.9 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS33875 -5.6 -7.7 tryptophan synthase subunit alpha compare
BPHYT_RS03640 -5.4 -3.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS03480 -5.4 -6.9 ferritin compare
BPHYT_RS14190 -5.4 -8.2 carbamoyl phosphate synthase large subunit compare
BPHYT_RS16245 -5.4 -7.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS33880 -5.4 -7.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS33865 -5.3 -10.1 tryptophan synthase alpha chain compare
BPHYT_RS16905 -5.2 -8.0 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS16255 -5.1 -3.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS17400 -4.8 -6.5 anthranilate phosphoribosyltransferase compare
BPHYT_RS14845 -4.8 -5.0 cysteine synthase compare
BPHYT_RS17885 -4.8 -8.6 3-dehydroquinate synthase compare
BPHYT_RS33840 -4.7 -10.5 amidophosphoribosyltransferase compare
BPHYT_RS17395 -4.6 -3.2 anthranilate synthase subunit II compare
BPHYT_RS17390 -4.6 -13.9 anthranilate synthase subunit I compare
BPHYT_RS03535 -4.5 -5.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS17890 -4.5 -3.1 shikimate kinase compare
BPHYT_RS16675 -4.3 -2.9 dihydroorotase compare
BPHYT_RS17405 -4.3 -1.7 indole-3-glycerol phosphate synthase compare
BPHYT_RS06610 -4.2 -3.4 triosephosphate isomerase compare
BPHYT_RS16840 -4.0 -3.9 transketolase compare
BPHYT_RS12985 -4.0 -3.7 amino acid acetyltransferase compare
BPHYT_RS06900 -3.9 -9.6 aspartate aminotransferase compare
BPHYT_RS16735 -3.7 -7.3 phosphogluconate dehydratase compare
BPHYT_RS06405 -3.7 -7.4 phosphoribosylamine--glycine ligase compare
BPHYT_RS33645 -3.7 -9.2 homoserine kinase compare
BPHYT_RS08565 -3.6 -1.9 dihydroorotate dehydrogenase compare
BPHYT_RS08955 -3.6 -7.1 homoserine dehydrogenase compare
BPHYT_RS14895 -3.2 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS12845 -3.1 -17.2 ATPase compare
BPHYT_RS14855 -3.0 -3.6 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS15915 -2.9 -9.3 ornithine carbamoyltransferase compare
BPHYT_RS08960 -2.9 -2.7 threonine synthase compare
BPHYT_RS15920 -2.9 -9.8 argininosuccinate synthase compare
BPHYT_RS17520 -2.8 -6.6 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS13220 -2.8 -11.0 phosphomethylpyrimidine synthase compare
BPHYT_RS14915 -2.7 -9.5 phosphoserine aminotransferase compare
BPHYT_RS33920 -2.6 -11.1 type II citrate synthase compare
BPHYT_RS16270 -2.6 -4.2 phosphoglycerate kinase compare
BPHYT_RS03150 -2.5 -10.9 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS15670 -2.4 -7.5 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS35215 -2.4 -1.8 dehydrogenase compare
BPHYT_RS02590 -2.4 -8.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS16710 -2.3 -2.3 LysR family transcriptional regulator compare
BPHYT_RS12465 -2.3 -3.7 inositol monophosphatase compare
BPHYT_RS18705 -2.3 -2.7 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS17855 -2.2 -13.6 glutamate synthase compare
BPHYT_RS17700 -2.2 -5.2 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS14400 -2.2 -3.3 anti-sigma factor compare
BPHYT_RS06685 -2.1 -3.1 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS17530 -2.0 -8.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS14195 -2.0 -2.3 carbamoyl phosphate synthase small subunit compare
BPHYT_RS17690 -1.9 -10.1 imidazole glycerol phosphate synthase compare
BPHYT_RS03725 -1.9 -1.4 serine hydroxymethyltransferase compare
BPHYT_RS02865 -1.9 -3.9 hypothetical protein compare
BPHYT_RS17685 -1.9 -7.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS15415 -1.9 -11.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS18340 -1.8 -2.5 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS05030 -1.8 -4.0 sugar ABC transporter permease compare
BPHYT_RS14910 -1.7 -9.4 chorismate mutase compare
BPHYT_RS12840 -1.7 -3.8 pyruvate dehydrogenase compare
BPHYT_RS04720 -1.7 -4.9 transcriptional regulator compare
BPHYT_RS33915 -1.7 -6.1 isopropylmalate isomerase compare
BPHYT_RS05730 -1.7 -3.2 hypothetical protein compare
BPHYT_RS33900 -1.7 -7.6 3-isopropylmalate dehydrogenase compare
BPHYT_RS05020 -1.6 -7.3 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS05010 -1.6 -4.3 RpiR family transcriptional regulator compare
BPHYT_RS16835 -1.6 -4.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS03645 -1.6 -3.6 tRNA dimethylallyltransferase compare
BPHYT_RS08410 -1.6 -1.6 dehydrogenase compare
BPHYT_RS05225 -1.5 -7.4 phosphoenolpyruvate carboxylase compare
BPHYT_RS23230 -1.5 -1.3 histidine kinase compare
BPHYT_RS17715 -1.5 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS33835 -1.5 -7.3 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS01455 -1.5 -1.0 peptide deformylase compare
BPHYT_RS17095 -1.5 -3.0 proline--tRNA ligase compare
BPHYT_RS16975 -1.5 -4.3 shikimate 5-dehydrogenase compare
BPHYT_RS04725 -1.5 -7.1 sulfite reductase compare
BPHYT_RS05025 -1.5 -4.8 sugar ABC transporter substrate-binding protein compare
BPHYT_RS12150 -1.5 -9.8 PII uridylyl-transferase compare
BPHYT_RS19985 -1.5 -1.4 CoA-transferase compare
BPHYT_RS14550 -1.4 -1.3 tRNA-Asn compare
BPHYT_RS01595 -1.4 -8.8 homoserine O-acetyltransferase compare
BPHYT_RS09480 -1.4 -2.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS24590 -1.4 -1.0 DeoR faimly transcriptional regulator compare
BPHYT_RS09500 -1.4 -5.2 glucose-6-phosphate isomerase compare
BPHYT_RS29855 -1.4 -1.3 protein-tyrosine-phosphatase compare
BPHYT_RS05040 -1.4 -2.1 sugar ABC transporter ATPase compare
BPHYT_RS25075 -1.4 -1.9 AraC family transcriptional regulator compare
BPHYT_RS06990 -1.4 -2.1 membrane protein compare
BPHYT_RS33060 -1.4 -2.8 hypothetical protein compare
BPHYT_RS33030 -1.4 -1.3 hypothetical protein compare
BPHYT_RS08850 -1.3 -2.2 transcriptional regulator compare
BPHYT_RS14865 -1.3 -3.4 UDP-glucose 6-dehydrogenase compare
BPHYT_RS06545 -1.3 -6.8 acetolactate synthase compare
BPHYT_RS26685 -1.3 -1.8 precorrin-8X methylmutase compare
BPHYT_RS10165 -1.3 -2.4 transcriptional regulator compare
BPHYT_RS04750 -1.3 -2.9 uroporphyrin-III C-methyltransferase compare
BPHYT_RS30450 -1.3 -1.2 ABC transporter permease compare
BPHYT_RS01590 -1.2 -3.7 methionine biosynthesis protein MetW compare
BPHYT_RS05035 -1.2 -4.1 sugar ABC transporter permease compare
BPHYT_RS16880 -1.2 -2.1 malic enzyme compare
BPHYT_RS09650 -1.2 -2.4 hypothetical protein compare
BPHYT_RS04290 -1.2 -2.1 glycosyl transferase family 2 compare
BPHYT_RS02975 -1.2 -3.5 membrane protein compare
BPHYT_RS12530 -1.2 -3.7 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS09860 -1.2 -1.2 pilus assembly protein PilP compare
BPHYT_RS06045 -1.2 -5.6 transaldolase compare
BPHYT_RS27175 -1.2 -1.0 DNA-binding protein compare
BPHYT_RS16340 -1.2 -4.9 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS13605 -1.2 -1.4 tRNA-Pro compare
BPHYT_RS23170 -1.2 -2.0 XRE family transcriptional regulator compare
BPHYT_RS33580 -1.2 -4.4 geranyltranstransferase compare
BPHYT_RS04730 -1.2 -5.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS17670 -1.1 -2.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17680 -1.1 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS06175 -1.1 -3.9 LPS biosynthesis compare
BPHYT_RS29820 -1.1 -2.1 hypothetical protein compare
BPHYT_RS17675 -1.1 -2.1 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS25410 -1.1 -3.4 porin compare
BPHYT_RS12535 -1.1 -1.0 membrane protein compare
BPHYT_RS18910 -1.1 -1.1 FlgN compare
BPHYT_RS04740 -1.1 -4.3 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS14185 -1.1 -2.2 transcription elongation factor GreA compare
BPHYT_RS10750 -1.1 -1.2 LysR family transcriptional regulator compare
BPHYT_RS28040 -1.1 -2.5 acyl-CoA dehydrogenase compare
BPHYT_RS19610 -1.1 -1.8 general secretion pathway protein GspC compare
BPHYT_RS14660 -1.1 -2.8 hypothetical protein compare
BPHYT_RS18760 -1.0 -3.6 flagellar biosynthesis protein FliT compare
BPHYT_RS10100 -1.0 -3.7 dihydroxy-acid dehydratase compare
BPHYT_RS33870 -1.0 -2.5 DNA methylase N-4 compare
BPHYT_RS09145 -1.0 -4.7 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS06350 -1.0 -1.7 chemotaxis protein CheY compare
BPHYT_RS17525 -1.0 -1.9 glutaredoxin compare
BPHYT_RS16345 -1.0 -3.8 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS18710 -1.0 -2.2 membrane protein compare
BPHYT_RS06555 -1.0 -5.4 ketol-acid reductoisomerase compare
BPHYT_RS15305 -1.0 -5.2 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS10005 -1.0 -1.5 hypothetical protein compare
BPHYT_RS35785 -1.0 -1.8 glucose-1-dehydrogenase compare
BPHYT_RS17100 -1.0 -5.0 RNA pyrophosphohydrolase compare
BPHYT_RS13470 -0.9 -0.9 arylsulfate sulfotransferase compare
BPHYT_RS08950 -0.9 -4.1 aminotransferase compare
BPHYT_RS28860 -0.9 -1.1 haloacid dehalogenase compare
BPHYT_RS04965 -0.9 -4.1 ATP-binding protein compare
BPHYT_RS33905 -0.9 -1.0 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS33370 -0.9 -1.1 LysR family transcriptional regulator compare
BPHYT_RS04745 -0.9 -3.6 sulfate adenylyltransferase compare
BPHYT_RS13645 -0.9 -7.5 threonine--tRNA ligase compare
BPHYT_RS11635 -0.9 -0.9 RNA polymerase subunit sigma-24 compare
BPHYT_RS09155 -0.9 -3.6 3-ketoacyl-ACP reductase compare
BPHYT_RS00690 -0.9 -0.9 transcriptional regulator compare
BPHYT_RS06075 -0.9 -5.1 hypothetical protein compare
BPHYT_RS08165 -0.9 -1.6 pilus assembly protein TadE compare
BPHYT_RS15325 -0.9 -3.1 ribonuclease PH compare
BPHYT_RS01485 -0.9 -1.0 histidine kinase compare
BPHYT_RS09330 -0.9 -6.0 phytoene synthase compare
BPHYT_RS26825 -0.9 -2.7 quercetin 2,3-dioxygenase compare
BPHYT_RS17445 -0.9 -2.5 GTP-binding protein YchF compare
BPHYT_RS06375 -0.9 -3.7 ribonuclease compare
BPHYT_RS02905 -0.9 -7.3 RNA polymerase subunit sigma-54 compare
BPHYT_RS36435 -0.9 -2.1 hypothetical protein compare
BPHYT_RS03730 -0.8 -2.0 transcriptional repressor NrdR compare
BPHYT_RS30350 -0.8 -2.3 LysR family transcriptional regulator compare
BPHYT_RS03570 -0.8 -3.9 heat-inducible transcription repressor HrcA compare
BPHYT_RS24315 -0.8 -1.6 phosphoribosyltransferase compare
BPHYT_RS12615 -0.8 -1.2 dihydrodipicolinate synthase compare
BPHYT_RS25650 -0.8 -2.4 dihydroxy-acid dehydratase compare
BPHYT_RS12825 -0.8 -1.8 phasin family protein compare
BPHYT_RS19680 -0.8 -6.4 glutamate--cysteine ligase compare
BPHYT_RS29330 -0.8 -2.9 acetyltransferase compare
BPHYT_RS12725 -0.8 -5.6 regulator compare
BPHYT_RS06470 -0.8 -1.2 membrane protein compare
BPHYT_RS26060 -0.8 -3.1 allophanate hydrolase compare
BPHYT_RS30185 -0.8 -2.2 DNA-directed RNA polymerase subunit alpha compare
BPHYT_RS07815 -0.8 -2.2 phosphonate transporter compare
BPHYT_RS14140 -0.8 -2.9 phosphate transporter permease subunit PstC compare
BPHYT_RS32225 -0.8 -1.7 hypothetical protein compare
BPHYT_RS22540 -0.8 -1.2 metal ABC transporter permease compare
BPHYT_RS07325 -0.8 -0.7 GntR family transcriptional regulator compare
BPHYT_RS27830 -0.8 -2.9 universal stress protein A compare
BPHYT_RS12990 -0.8 -1.4 iron transporter compare
BPHYT_RS03740 -0.8 -2.1 hypothetical protein compare
BPHYT_RS35800 -0.8 -2.2 TetR family transcriptional regulator compare
BPHYT_RS28595 -0.8 -1.0 glyoxalase compare
BPHYT_RS30020 -0.8 -2.0 arsenic transporter compare
BPHYT_RS11795 -0.8 -1.0 membrane protein compare
BPHYT_RS21485 -0.8 -0.9 hypothetical protein compare
BPHYT_RS05960 -0.8 -2.3 endoribonuclease L-PSP compare
BPHYT_RS22215 -0.8 -1.5 hypothetical protein compare
BPHYT_RS19305 -0.8 -4.6 ATP-dependent DNA helicase Rep compare
BPHYT_RS10635 -0.8 -2.0 transcriptional regulator compare
BPHYT_RS23890 -0.8 -3.0 MFS transporter compare
BPHYT_RS28535 -0.8 -0.7 response regulator receiver compare
BPHYT_RS17920 -0.8 -1.2 protein CyaY compare
BPHYT_RS06605 -0.7 -2.4 NAD(P)H quinone oxidoreductase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in nutrient experiments

For nutrient casamino acids across organisms