Experiment set4IT039 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with methylglyoxal 0.016 vol%

200 most important genes:

  gene name fitness t score description  
AO356_24480 -6.1 -5.9 hydroxyacylglutathione hydrolase conserved
AO356_15680 -5.8 -6.8 DNA repair protein RadA conserved
AO356_05995 -5.7 -3.9 hypothetical protein compare
AO356_22185 -5.7 -3.9 recombination factor protein RarA compare
AO356_11055 -5.3 -5.2 long-chain acyl-CoA thioester hydrolase compare
AO356_05425 -5.3 -9.6 ATP-dependent DNA helicase DinG conserved
AO356_00350 -4.9 -12.6 excinuclease ABC subunit C conserved
AO356_11990 -4.8 -10.8 DNA helicase II compare
AO356_21335 -4.8 -18.9 excinuclease ABC subunit B conserved
AO356_14785 -4.7 -23.1 ABC-ATPase UvrA conserved
AO356_13475 -4.5 -8.1 glutathione synthetase compare
AO356_12380 -4.5 -3.1 ATP-dependent DNA helicase RecG compare
AO356_08930 -4.1 -2.8 heptose kinase compare
AO356_05670 -3.8 -2.6 recombinase RecA compare
AO356_18025 -3.8 -2.6 ATP-dependent DNA helicase RuvB compare
AO356_16955 -3.7 -7.4 disulfide bond formation protein B compare
AO356_19080 -3.7 -10.7 dehydrogenase compare
AO356_01740 -3.6 -4.3 DNA-binding protein compare
AO356_05920 -3.6 -11.3 S-(hydroxymethyl)glutathione dehydrogenase conserved
AO356_08925 -3.6 -7.7 lipopolysaccharide kinase compare
AO356_12515 -3.6 -4.9 exodeoxyribonuclease III compare
AO356_10185 -3.6 -8.7 glutamate--cysteine ligase compare
AO356_05925 -3.5 -11.6 LysR family transcriptional regulator compare
AO356_18020 -3.5 -3.3 ATP-dependent DNA helicase RuvA compare
AO356_07510 -3.4 -16.3 DNA repair protein RecN conserved
AO356_19050 -3.4 -4.6 cysteine synthase compare
AO356_09780 -3.3 -6.2 peptidase S41 compare
AO356_05915 -3.3 -6.5 S-formylglutathione hydrolase conserved
AO356_12520 -3.2 -3.6 orotate phosphoribosyltransferase compare
AO356_02315 -3.2 -4.3 DNA topoisomerase I compare
AO356_19420 -3.2 -2.2 septum formation inhibitor compare
AO356_11465 -3.1 -9.5 DNA polymerase I compare
AO356_25260 -3.0 -1.9 iron transporter compare
AO356_16485 -3.0 -9.3 hypothetical protein compare
AO356_17985 -3.0 -7.0 cold-shock protein compare
AO356_18115 -3.0 -8.6 transporter compare
AO356_14505 -3.0 -2.8 peptidase M23 compare
AO356_16070 -2.9 -7.3 poly(A) polymerase compare
AO356_17515 -2.8 -12.2 murein transglycosylase compare
AO356_07910 -2.7 -1.9 exodeoxyribonuclease V subunit alpha compare
AO356_06385 -2.7 -3.4 recombinase XerD compare
AO356_15325 -2.7 -3.4 hypothetical protein compare
AO356_12725 -2.6 -5.3 recombinase XerC compare
AO356_07915 -2.6 -3.0 exodeoxyribonuclease V subunit beta compare
AO356_22815 -2.5 -2.5 lactoylglutathione lyase compare
AO356_08235 -2.5 -9.4 histidine kinase compare
AO356_02495 -2.4 -7.3 recombination protein RecR compare
AO356_24655 -2.4 -3.9 hypothetical protein compare
AO356_17505 -2.4 -5.1 DNA repair protein RecO compare
AO356_06995 -2.4 -6.2 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_05565 -2.4 -5.6 hypothetical protein compare
AO356_02785 -2.3 -3.5 uroporphyrin-III methyltransferase compare
AO356_06575 -2.2 -3.3 outer membrane protein assembly factor BamB compare
AO356_04560 -2.2 -3.0 serine peptidase compare
AO356_30345 -2.2 -4.9 IclR family transcriptional regulator compare
AO356_20520 -2.2 -1.9 oxidoreductase compare
AO356_02270 -2.2 -11.6 transcription-repair coupling factor compare
AO356_11635 -2.2 -8.5 recombinase RecF compare
AO356_20940 -2.2 -1.7 hypothetical protein compare
AO356_08610 -2.1 -6.8 exoribonuclease R compare
AO356_00995 -2.1 -5.0 carbon storage regulator CsrA compare
AO356_27085 -2.1 -4.5 LysR family transcriptional regulator compare
AO356_11045 -2.1 -10.3 phosphate-binding protein compare
AO356_19565 -2.0 -2.2 hypothetical protein compare
AO356_03800 -2.0 -1.5 histidine kinase compare
AO356_06615 -1.9 -1.2 FeS assembly protein IscX compare
AO356_28845 -1.9 -1.7 ferrichrome ABC transporter compare
AO356_13685 -1.9 -3.7 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_15165 -1.9 -2.3 protein cII compare
AO356_19645 -1.9 -6.2 ABC transporter conserved
AO356_04300 -1.9 -8.7 aspartyl beta-hydroxylase compare
AO356_07005 -1.8 -1.7 ABC transporter ATP-binding protein compare
AO356_19040 -1.8 -4.8 hydroxyacid dehydrogenase compare
AO356_22405 -1.7 -1.9 hypothetical protein compare
AO356_03775 -1.7 -1.2 flagellar assembly protein FliO compare
AO356_06990 -1.7 -4.5 toluene tolerance protein compare
AO356_09900 -1.7 -8.2 ABC transporter for L-Lysine, periplasmic substrate-binding component (from data) compare
AO356_11025 -1.7 -4.0 transcriptional regulator PhoU compare
AO356_27180 -1.6 -3.9 hypothetical protein compare
AO356_07055 -1.6 -2.3 phosphocarrier protein HPr compare
AO356_21320 -1.6 -1.4 tRNA-Asn compare
AO356_07000 -1.6 -2.3 ABC transporter permease compare
AO356_11030 -1.6 -8.2 phosphate ABC transporter ATP-binding protein compare
AO356_08875 -1.6 -2.3 toluene tolerance protein compare
AO356_23215 -1.6 -3.9 conjugal transfer protein TraR compare
AO356_24645 -1.6 -4.1 hypothetical protein compare
AO356_26195 -1.6 -2.9 TetR family transcriptional regulator compare
AO356_03780 -1.5 -1.2 flagellar motor switch protein compare
AO356_28595 -1.5 -2.0 transcriptional regulator compare
AO356_26390 -1.5 -2.7 hypothetical protein compare
AO356_24640 -1.5 -3.9 protein BatD compare
AO356_07020 -1.5 -1.6 LPS export ABC transporter periplasmic protein LptC compare
AO356_10585 -1.4 -7.3 hypothetical protein compare
AO356_28910 -1.4 -1.3 LysR family transcriptional regulator compare
AO356_19835 -1.4 -1.8 histidine kinase compare
AO356_20845 -1.4 -3.8 alpha-L-glutamate ligase compare
AO356_16830 -1.4 -6.3 fumarylacetoacetase compare
AO356_02955 -1.4 -1.2 hypothetical protein compare
AO356_20395 -1.4 -2.0 acetyl-CoA acetyltransferase compare
AO356_30375 -1.4 -2.5 hypothetical protein compare
AO356_24665 -1.4 -4.1 AAA family ATPase compare
AO356_25110 -1.4 -1.7 protein DnrP compare
AO356_19650 -1.4 -8.0 serine/threonine protein kinase conserved
AO356_02190 -1.4 -5.2 hypothetical protein compare
AO356_09455 -1.3 -1.3 ATP-dependent protease subunit HslV compare
AO356_16235 -1.3 -9.6 mammalian cell entry protein compare
AO356_12895 -1.3 -9.7 polyphosphate kinase compare
AO356_02720 -1.3 -2.2 type III secretion protein compare
AO356_05895 -1.3 -3.8 protein-L-isoaspartate O-methyltransferase compare
AO356_29795 -1.3 -1.9 amino acid transporter compare
AO356_08160 -1.3 -2.9 translation initiation factor Sui1 compare
AO356_05400 -1.3 -3.6 hypothetical protein compare
AO356_04280 -1.3 -7.5 ATP-dependent RNA helicase HrpA conserved
AO356_24650 -1.3 -3.1 BatB protein compare
AO356_03480 -1.3 -6.8 methylthioribose-1-phosphate isomerase compare
AO356_28710 -1.3 -1.3 aldehyde dehydrogenase compare
AO356_09775 -1.3 -5.9 peptidase M23 compare
AO356_17090 -1.2 -2.5 phospholipid-binding protein compare
AO356_08755 -1.2 -1.4 aspartyl protease compare
AO356_19265 -1.2 -3.8 recombination-associated protein RdgC compare
AO356_30060 -1.2 -2.7 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase compare
AO356_26395 -1.2 -1.0 hypothetical protein compare
AO356_03005 -1.2 -3.3 transcriptional regulator compare
AO356_04055 -1.2 -1.5 hypothetical protein compare
AO356_05415 -1.2 -3.2 hypothetical protein compare
AO356_18780 -1.2 -1.4 carbon storage regulator compare
AO356_25360 -1.2 -1.8 dimethylmenaquinone methyltransferase compare
AO356_12780 -1.2 -4.6 argininosuccinate lyase compare
AO356_20260 -1.2 -2.2 termination factor Rho compare
AO356_18090 -1.2 -5.6 AMP-dependent synthetase compare
AO356_22090 -1.2 -2.3 GNAT family acetyltransferase compare
AO356_22650 -1.2 -1.7 chemotaxis protein CheD compare
AO356_21260 -1.2 -1.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO356_10075 -1.1 -3.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_21035 -1.1 -3.8 hypothetical protein compare
AO356_06005 -1.1 -2.2 zinc metallopeptidase RseP compare
AO356_05900 -1.1 -3.7 stationary phase survival protein SurE compare
AO356_19210 -1.1 -1.5 hypothetical protein compare
AO356_28330 -1.1 -2.8 secretion protein HlyD compare
AO356_15925 -1.1 -3.2 ribosomal large subunit pseudouridine synthase D compare
AO356_12620 -1.1 -5.3 amino acid dehydrogenase compare
AO356_20340 -1.1 -3.1 hypothetical protein compare
AO356_17785 -1.1 -1.1 heme utilization protein compare
AO356_27230 -1.1 -5.0 hypothetical protein compare
AO356_10880 -1.1 -0.9 hypothetical protein compare
AO356_07600 -1.1 -1.9 hypothetical protein compare
AO356_29355 -1.1 -1.2 hypothetical protein compare
AO356_06780 -1.1 -2.1 hypothetical protein compare
AO356_00675 -1.1 -2.0 glyoxalase compare
AO356_06935 -1.1 -1.8 glycerate dehydrogenase compare
AO356_27600 -1.1 -3.8 RND transporter MFP subunit compare
AO356_11040 -1.1 -8.1 phosphate ABC transporter permease compare
AO356_25225 -1.0 -0.9 peptidylprolyl isomerase compare
AO356_24755 -1.0 -1.2 type II secretion system protein GspH compare
AO356_18085 -1.0 -3.0 thermostable hemolysin compare
AO356_25750 -1.0 -1.3 GntR family transcriptional regulator compare
AO356_12750 -1.0 -2.2 DNA mismatch repair protein MutT compare
AO356_26485 -1.0 -1.4 hypothetical protein compare
AO356_20720 -1.0 -2.7 glyoxalase compare
AO356_05790 -1.0 -2.2 hypothetical protein compare
AO356_26695 -1.0 -3.7 phosphate ABC transporter permease compare
AO356_09355 -1.0 -2.1 cytochrome B compare
AO356_20335 -1.0 -2.2 hypothetical protein compare
AO356_13345 -1.0 -1.7 cell division ATP-binding protein FtsE compare
AO356_15330 -1.0 -3.2 D-alanyl-D-alanine carboxypeptidase compare
AO356_03305 -1.0 -1.1 ATPase compare
AO356_13710 -1.0 -2.0 fructose-bisphosphate aldolase compare
AO356_21790 -1.0 -1.7 sulfonate ABC transporter ATP-binding protein compare
AO356_16760 -1.0 -2.5 hypothetical protein compare
AO356_12610 -1.0 -1.0 Fe-S oxidoreductase compare
AO356_22125 -1.0 -3.4 isocitrate dehydrogenase compare
AO356_27840 -1.0 -4.2 sodium:proton antiporter compare
AO356_06890 -1.0 -1.1 cysteine methyltransferase compare
AO356_11430 -1.0 -4.8 N-acetylmuramoyl-L-alanine amidase compare
AO356_27610 -1.0 -1.8 RND transporter compare
AO356_19610 -1.0 -1.6 2-hydroxy-3-oxopropionate reductase compare
AO356_18855 -0.9 -1.2 hypothetical protein compare
AO356_22795 -0.9 -0.6 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_05795 -0.9 -2.2 phage tail protein compare
AO356_07480 -0.9 -2.0 carbamoyl phosphate synthase large subunit compare
AO356_26180 -0.9 -3.4 hypothetical protein compare
AO356_22565 -0.9 -1.8 hypothetical protein compare
AO356_12950 -0.9 -3.6 calcium transporter ChaC compare
AO356_15920 -0.9 -2.6 DNA transporter compare
AO356_27245 -0.9 -1.5 hypothetical protein compare
AO356_13350 -0.9 -5.7 cell division protein FtsX compare
AO356_08465 -0.9 -1.5 protein hupE compare
AO356_20445 -0.9 -2.2 hypothetical protein compare
AO356_12660 -0.9 -1.9 diguanylate cyclase compare
AO356_27925 -0.9 -1.2 MarR family transcriptional regulator compare
AO356_04555 -0.9 -4.1 peptidase M48 compare
AO356_19390 -0.9 -1.5 hypothetical protein compare
AO356_16230 -0.9 -5.3 paraquat-inducible protein A compare
AO356_05750 -0.9 -2.1 phage tail protein compare
AO356_15665 -0.9 -2.0 large-conductance mechanosensitive channel compare
AO356_02940 -0.9 -2.0 hypothetical protein compare
AO356_00990 -0.9 -1.4 penicillin-binding protein activator LpoB compare
AO356_13655 -0.9 -2.4 hypothetical protein compare
AO356_19635 -0.9 -3.7 TetR family transcriptional regulator compare
AO356_05755 -0.9 -1.5 ArsR family transcriptional regulator compare


Specific Phenotypes

For 22 genes in this experiment

For stress methylglyoxal in Pseudomonas fluorescens FW300-N2C3

For stress methylglyoxal across organisms