Experiment set4IT039 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with methylglyoxal 0.016 vol%

200 most detrimental genes:

  gene name fitness t score description  
AO356_16050 +3.1 10.1 glucose-6-phosphate isomerase compare
AO356_19090 +3.0 11.7 phosphoribosylaminoimidazole synthetase compare
AO356_03885 +2.8 21.9 beta-ketoacyl-ACP synthase compare
AO356_09765 +2.7 5.6 sulfurtransferase compare
AO356_22820 +2.7 8.4 hypothetical protein compare
AO356_17520 +2.6 6.4 phosphoribosylformylglycinamidine synthase compare
AO356_09425 +2.6 18.9 malate dehydrogenase compare
AO356_21465 +2.1 8.9 amidophosphoribosyltransferase compare
AO356_17950 +2.0 14.1 histidine kinase compare
AO356_00920 +2.0 4.2 cold-shock protein compare
AO356_12605 +2.0 15.1 FAD-dependent oxidoreductase compare
AO356_12715 +2.0 10.0 hypothetical protein compare
AO356_11270 +1.9 12.8 potassium transporter peripheral membrane component compare
AO356_16185 +1.9 7.8 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_03375 +1.9 3.3 ExsB family protein compare
AO356_16060 +1.9 5.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_03400 +1.9 9.4 aminotransferase DegT compare
AO356_17035 +1.8 9.2 ATPase compare
AO356_04050 +1.8 11.0 ATP-dependent DNA helicase RecQ conserved
AO356_19045 +1.8 8.5 chemotaxis protein CheY compare
AO356_08890 +1.8 7.4 glycosyltransferase compare
AO356_08585 +1.8 5.8 50S ribosomal protein L9 compare
AO356_21275 +1.8 4.2 peptidase compare
AO356_03995 +1.7 10.7 potassium transporter TrkH compare
AO356_06345 +1.7 10.0 single-stranded-DNA-specific exonuclease RecJ conserved
AO356_08885 +1.7 9.9 hypothetical protein compare
AO356_16075 +1.6 6.6 Fis family transcriptional regulator compare
AO356_06965 +1.6 9.9 histidinol dehydrogenase compare
AO356_13485 +1.6 3.8 chemotaxis protein CheY compare
AO356_20830 +1.6 7.1 phosphoadenosine phosphosulfate reductase compare
AO356_03385 +1.5 5.5 imidazole glycerol phosphate synthase subunit HisH compare
AO356_07110 +1.5 6.0 ribonuclease G compare
AO356_01570 +1.5 6.5 hydroxymethylglutaryl-CoA lyase compare
AO356_03350 +1.5 6.0 glycosyl transferase compare
AO356_03380 +1.5 5.9 glycosyl amidation-associated protein WbuZ compare
AO356_03430 +1.5 5.0 hypothetical protein compare
AO356_16170 +1.4 10.1 acetolactate synthase 3 catalytic subunit compare
AO356_09760 +1.4 5.2 glutaredoxin compare
AO356_05540 +1.4 4.3 cold-shock protein compare
AO356_03415 +1.4 8.1 oxidoreductase compare
AO356_06690 +1.4 5.3 queuine tRNA-ribosyltransferase compare
AO356_09810 +1.4 5.8 imidazole glycerol phosphate synthase subunit HisH compare
AO356_18740 +1.4 4.0 succinylglutamate-semialdehyde dehydrogenase compare
AO356_03855 +1.4 11.0 AAA family ATPase compare
AO356_08870 +1.4 6.6 polymerase compare
AO356_03355 +1.4 3.8 hypothetical protein compare
AO356_08910 +1.4 5.2 carbamoyltransferase compare
AO356_29855 +1.3 2.0 hypothetical protein compare
AO356_09800 +1.3 5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_08645 +1.3 5.8 hypothetical protein compare
AO356_22800 +1.3 7.4 glutathione reductase compare
AO356_16175 +1.3 7.4 acetolactate synthase 3 regulatory subunit compare
AO356_06605 +1.3 3.3 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO356_03360 +1.3 3.0 hypothetical protein compare
AO356_09815 +1.3 4.9 imidazoleglycerol-phosphate dehydratase compare
AO356_14050 +1.3 1.9 glutathione S-transferase compare
AO356_09755 +1.3 4.2 preprotein translocase subunit SecB compare
AO356_16080 +1.2 8.5 ATPase compare
AO356_15305 +1.2 4.6 50S rRNA methyltransferase compare
AO356_13505 +1.2 2.6 chemotaxis protein compare
AO356_17070 +1.2 3.2 cytochrome B compare
AO356_19745 +1.2 7.3 heat-shock protein Hsp90 compare
AO356_04900 +1.2 1.2 4-carboxymuconolactone decarboxylase compare
AO356_03365 +1.1 2.8 UDP-N-acetylglucosamine 2-epimerase compare
AO356_02325 +1.1 1.8 3-ketoacyl-CoA thiolase compare
AO356_13250 +1.1 7.1 dihydroxy-acid dehydratase compare
AO356_22585 +1.1 2.4 MerR family transcriptional regulator compare
AO356_19840 +1.1 6.4 histidine kinase compare
AO356_00575 +1.1 2.0 SCP-2 family sterol carrier protein compare
AO356_05160 +1.1 6.7 glucose-6-phosphate dehydrogenase compare
AO356_29270 +1.1 2.4 ABC transporter permease compare
AO356_11275 +1.1 6.1 16S rRNA methyltransferase compare
AO356_07750 +1.1 4.3 plasmid stabilization protein compare
AO356_08400 +1.1 2.1 chaperone modulatory protein CbpM compare
AO356_02105 +1.1 1.9 hypothetical protein compare
AO356_03285 +1.0 2.5 hypothetical protein compare
AO356_13320 +1.0 2.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO356_17065 +1.0 1.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_08590 +1.0 5.5 hypothetical protein compare
AO356_00810 +1.0 1.6 hypothetical protein compare
AO356_03095 +1.0 4.7 protease HtpX compare
AO356_03180 +1.0 4.9 CysB family transcriptional regulator compare
AO356_25665 +1.0 1.6 3-beta hydroxysteroid dehydrogenase compare
AO356_15815 +1.0 1.3 gamma-glutamyl kinase compare
AO356_24550 +1.0 2.0 hypothetical protein compare
AO356_14940 +1.0 5.9 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
AO356_01500 +1.0 5.1 RpiR family transcriptional regulator compare
AO356_19215 +1.0 3.8 hypothetical protein compare
AO356_25655 +1.0 2.2 TetR family transcriptional regulator compare
AO356_10935 +1.0 2.7 hypothetical protein compare
AO356_09940 +1.0 1.7 hypothetical protein compare
AO356_13600 +1.0 6.8 hypothetical protein compare
AO356_12640 +1.0 1.3 cytochrome C compare
AO356_20880 +1.0 2.5 3-methylitaconate isomerase compare
AO356_18010 +1.0 3.3 hypothetical protein compare
AO356_06100 +1.0 3.3 hypothetical protein compare
AO356_15440 +0.9 8.3 histidine kinase compare
AO356_04965 +0.9 1.4 ATP-dependent helicase compare
AO356_01750 +0.9 3.9 ATP-dependent Clp protease proteolytic subunit compare
AO356_02440 +0.9 5.7 cytochrome C oxidase Cbb3 compare
AO356_02905 +0.9 5.6 amino acid ABC transporter substrate-binding protein compare
AO356_25720 +0.9 0.9 polyamine ABC transporter permease compare
AO356_18730 +0.9 5.5 arginine N-succinyltransferase compare
AO356_25120 +0.9 2.0 hypothetical protein compare
AO356_22170 +0.9 3.7 thioredoxin reductase compare
AO356_18435 +0.9 2.1 hypothetical protein compare
AO356_03245 +0.9 2.8 hypothetical protein compare
AO356_08525 +0.9 4.8 NAD synthetase compare
AO356_24555 +0.9 1.6 hypothetical protein compare
AO356_08640 +0.9 3.1 membrane protease HflC compare
AO356_10795 +0.9 7.9 poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB compare
AO356_11620 +0.9 6.9 transcriptional regulator compare
AO356_21765 +0.9 1.3 GntR family transcriptional regulator compare
AO356_21460 +0.9 2.5 colicin V production CvpA compare
AO356_10785 +0.9 5.9 poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD compare
AO356_19255 +0.9 1.6 molecular chaperone compare
AO356_19240 +0.9 1.4 cupin compare
AO356_04160 +0.9 2.8 hypothetical protein compare
AO356_18745 +0.9 5.0 succinylarginine dihydrolase compare
AO356_09520 +0.9 3.2 phosphoribosyl-AMP cyclohydrolase compare
AO356_12795 +0.9 5.4 heme biosynthesis operon protein HemX compare
AO356_08275 +0.9 1.6 precorrin isomerase compare
AO356_01915 +0.9 2.1 hypothetical protein compare
AO356_05030 +0.9 3.3 ketosteroid isomerase compare
AO356_10800 +0.9 7.7 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA compare
AO356_13145 +0.9 5.1 glutamine synthetase compare
AO356_21515 +0.9 1.8 antitoxin compare
AO356_23420 +0.9 4.5 carboxynorspermidine decarboxylase compare
AO356_08280 +0.9 3.3 oxidoreductase compare
AO356_12720 +0.9 3.4 HAD family hydrolase compare
AO356_09165 +0.9 1.5 glycosyl transferase compare
AO356_06685 +0.9 0.9 preprotein translocase subunit YajC compare
AO356_03345 +0.8 4.8 hypothetical protein compare
AO356_01170 +0.8 2.5 glycosyl transferase family 1 compare
AO356_12905 +0.8 2.1 amino acid ABC transporter ATP-binding protein compare
AO356_09795 +0.8 1.2 imidazole glycerol phosphate synthase subunit HisF compare
AO356_16965 +0.8 7.2 cytochrome o ubiquinol oxidase subunit I compare
AO356_22200 +0.8 4.8 sirohydrochlorin ferrochelatase compare
AO356_10790 +0.8 5.7 poly-beta-1,6 N-acetyl-D-glucosamine synthase compare
AO356_05830 +0.8 1.4 phage tail protein compare
AO356_02425 +0.8 5.3 cytochrome C oxidase Cbb3 compare
AO356_07565 +0.8 3.9 lactate utilization protein B/C compare
AO356_12710 +0.8 3.3 hypothetical protein compare
AO356_18805 +0.8 1.2 magnesium transporter compare
AO356_05080 +0.8 1.1 peptide deformylase compare
AO356_14135 +0.8 6.1 biotin synthase compare
AO356_16975 +0.8 4.7 cytochrome C oxidase compare
AO356_15140 +0.8 1.6 homoserine dehydrogenase compare
AO356_14360 +0.8 4.2 mannose-1-phosphate guanylyltransferase compare
AO356_23075 +0.8 1.6 hypothetical protein compare
AO356_02290 +0.8 1.4 TetR family transcriptional regulator compare
AO356_14105 +0.8 1.1 glycine cleavage system protein R compare
AO356_01255 +0.8 4.8 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
AO356_21125 +0.8 2.4 cyclic peptide transporter compare
AO356_13500 +0.8 6.2 histidine kinase compare
AO356_28170 +0.8 1.9 hypothetical protein compare
AO356_18150 +0.8 3.6 hypothetical protein compare
AO356_17110 +0.8 4.6 methyltransferase compare
AO356_21220 +0.8 1.2 peptide ABC transporter substrate-binding protein compare
AO356_20125 +0.7 4.6 23S rRNA pseudouridylate synthase compare
AO356_12900 +0.7 2.5 exopolyphosphatase compare
AO356_18370 +0.7 2.2 NADH:quinone oxidoreductase compare
AO356_26910 +0.7 1.2 hypothetical protein compare
AO356_18675 +0.7 1.9 hypothetical protein compare
AO356_26575 +0.7 2.4 low temperature requirement protein A compare
AO356_20175 +0.7 1.2 3-oxoacyl-ACP synthase compare
AO356_17830 +0.7 3.1 pyruvate kinase compare
AO356_11760 +0.7 2.8 cytidyltransferase compare
AO356_03405 +0.7 1.5 serine acetyltransferase compare
AO356_07605 +0.7 3.0 lactam utilization protein LamB compare
AO356_06695 +0.7 3.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO356_14155 +0.7 4.1 dethiobiotin synthetase compare
AO356_17765 +0.7 1.2 antibiotic biosynthesis monooxygenase compare
AO356_27765 +0.7 1.5 hypothetical protein compare
AO356_13570 +0.7 4.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO356_16600 +0.7 1.2 malate:quinone oxidoreductase compare
AO356_19165 +0.7 2.1 adenosylcobinamide kinase compare
AO356_11495 +0.7 3.9 hypothetical protein compare
AO356_18775 +0.7 2.0 aspartate kinase compare
AO356_20800 +0.7 1.0 hypothetical protein compare
AO356_03420 +0.7 3.1 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_15735 +0.7 4.2 ABC transporter ATP-binding protein compare
AO356_17955 +0.7 4.2 2-dehydropantoate 2-reductase compare
AO356_15690 +0.7 1.9 carbon starvation protein A compare
AO356_01515 +0.7 2.7 N-formylglutamate amidohydrolase compare
AO356_07495 +0.7 1.9 molecular chaperone DnaJ compare
AO356_16970 +0.7 3.9 cytochrome o ubiquinol oxidase subunit III compare
AO356_02630 +0.7 2.2 secretion system protein compare
AO356_05210 +0.7 2.4 chemotaxis protein CheY compare
AO356_19425 +0.7 1.4 lipid A biosynthesis lauroyl acyltransferase compare
AO356_02520 +0.7 5.1 diguanylate cyclase compare
AO356_12945 +0.7 2.9 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO356_00555 +0.7 4.2 sulfite reductase compare
AO356_11615 +0.7 5.6 histidine kinase compare
AO356_20050 +0.7 4.3 hypothetical protein compare
AO356_09135 +0.7 3.0 3-oxoacyl-ACP synthase compare
AO356_28675 +0.7 1.2 glycosyl hydrolase compare
AO356_16005 +0.7 2.5 methyltransferase compare
AO356_12800 +0.7 4.1 heme biosynthesis protein HemY compare
AO356_02005 +0.7 2.1 hypothetical protein compare


Specific Phenotypes

For 22 genes in this experiment

For stress methylglyoxal in Pseudomonas fluorescens FW300-N2C3

For stress methylglyoxal across organisms