Experiment set4IT039 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Growth at pH8 and carbon source D-Glucose

200 most important genes:

  gene name fitness t score description  
PFLU_RS03575 -5.0 -3.1 hypothetical protein compare
PFLU_RS29400 -4.8 -3.1 DUF1127 domain-containing protein compare
PFLU_RS01645 -4.8 -17.6 S41 family peptidase compare
PFLU_RS03645 -4.7 -18.0 tetratricopeptide repeat protein compare
PFLU_RS02490 -4.3 -12.7 phosphoserine phosphatase SerB compare
PFLU_RS29885 -4.3 -12.7 LysR family transcriptional regulator compare
PFLU_RS12975 -4.3 -4.1 DUF934 domain-containing protein compare
PFLU_RS25750 -4.2 -5.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS26545 -4.0 -12.6 sel1 repeat family protein compare
PFLU_RS24125 -4.0 -4.7 cold-shock protein compare
PFLU_RS29875 -4.0 -18.5 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS18585 -3.9 -2.9 high frequency lysogenization protein HflD compare
PFLU_RS28695 -3.9 -9.0 phosphoglycerate dehydrogenase compare
PFLU_RS22095 -3.8 -22.4 GTP diphosphokinase compare
PFLU_RS20690 -3.8 -6.1 hypothetical protein compare
PFLU_RS29880 -3.7 -15.3 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS28645 -3.7 -14.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS29095 -3.7 -22.1 polyphosphate kinase 1 compare
PFLU_RS22595 -3.6 -2.5 OmpA family protein compare
PFLU_RS25955 -3.5 -2.5 hypothetical protein compare
PFLU_RS02180 -3.4 -1.5 thioredoxin TrxC compare
PFLU_RS27635 -3.4 -10.2 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS23070 -3.4 -1.5 50S ribosomal protein L32 compare
PFLU_RS18505 -3.4 -12.5 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS12980 -3.3 -11.1 nitrite/sulfite reductase compare
PFLU_RS28965 -3.2 -11.2 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS27645 -3.2 -13.3 8-amino-7-oxononanoate synthase compare
PFLU_RS23305 -3.2 -12.3 arginine N-succinyltransferase compare
PFLU_RS08160 -3.2 -9.0 sugar transferase compare
PFLU_RS22105 -3.2 -7.3 cysteine synthase CysM compare
PFLU_RS22740 -3.2 -6.9 phosphoadenylyl-sulfate reductase compare
PFLU_RS25735 -3.1 -8.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS09055 -3.1 -2.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS04565 -3.1 -1.4 TMEM165/GDT1 family protein compare
PFLU_RS25760 -3.1 -15.1 glucose-6-phosphate isomerase compare
PFLU_RS25755 -3.0 -4.5 pantoate--beta-alanine ligase compare
PFLU_RS26640 -2.9 -12.5 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS29515 -2.9 -10.2 RidA family protein compare
PFLU_RS04070 -2.9 -6.5 peptide chain release factor 3 compare
PFLU_RS11830 -2.8 -3.6 hypothetical protein compare
PFLU_RS28195 -2.8 -14.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS03075 -2.8 -2.4 translation initiation factor Sui1 compare
PFLU_RS28165 -2.7 -13.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS23585 -2.7 -8.3 GntP family permease compare
PFLU_RS03970 -2.7 -8.4 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS27650 -2.7 -12.8 biotin synthase BioB compare
PFLU_RS23065 -2.7 -9.5 phosphate acyltransferase PlsX compare
PFLU_RS18395 -2.6 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS06055 -2.6 -1.4 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS08505 -2.6 -8.0 protease HtpX compare
PFLU_RS17580 -2.6 -3.4 repressor LexA compare
PFLU_RS21300 -2.6 -5.2 cysteine hydrolase compare
PFLU_RS25360 -2.6 -7.2 glutamate 5-kinase compare
PFLU_RS20520 -2.6 -9.9 colicin V production protein CvpA compare
PFLU_RS23310 -2.6 -10.8 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS13540 -2.6 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS25640 -2.6 -11.8 ketol-acid reductoisomerase compare
PFLU_RS11475 -2.5 -1.3 histidine kinase compare
PFLU_RS24330 -2.5 -8.0 phosphogluconate dehydratase compare
PFLU_RS00415 -2.5 -1.7 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS20515 -2.5 -4.1 amidophosphoribosyltransferase compare
PFLU_RS28655 -2.5 -12.1 HAD family hydrolase compare
PFLU_RS24485 -2.5 -10.1 hypothetical protein compare
PFLU_RS01900 -2.5 -8.5 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS24025 -2.4 -10.7 quinolinate synthase NadA compare
PFLU_RS23725 -2.4 -11.7 glucose-6-phosphate dehydrogenase compare
PFLU_RS27630 -2.4 -5.4 dethiobiotin synthase compare
PFLU_RS03770 -2.4 -11.1 sulfate adenylyltransferase subunit CysN compare
PFLU_RS25920 -2.3 -2.9 outer membrane protein assembly factor BamE compare
PFLU_RS04660 -2.3 -6.1 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS18635 -2.3 -2.2 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS29275 -2.3 -5.8 DUF484 family protein compare
PFLU_RS03765 -2.3 -8.5 sulfate adenylyltransferase subunit CysD compare
PFLU_RS04715 -2.3 -4.8 D-alanine--D-alanine ligase compare
PFLU_RS17060 -2.2 -2.3 monooxygenase compare
PFLU_RS24095 -2.2 -3.5 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS07785 -2.2 -11.5 VacJ family lipoprotein compare
PFLU_RS28535 -2.2 -10.4 dihydroxy-acid dehydratase compare
PFLU_RS25875 -2.1 -1.5 transcription elongation factor GreA compare
PFLU_RS10500 -2.1 -4.1 DUF480 domain-containing protein compare
PFLU_RS00535 -2.1 -2.2 DUF1127 domain-containing protein compare
PFLU_RS20660 -2.1 -8.3 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS24085 -2.1 -3.7 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS23920 -2.0 -2.1 septation protein A compare
PFLU_RS18530 -2.0 -5.2 DNA translocase FtsK compare
PFLU_RS05250 -2.0 -5.2 elongation factor 4 compare
PFLU_RS07275 -2.0 -3.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS05885 -2.0 -6.1 recombinase RecA compare
PFLU_RS22070 -2.0 -4.2 phosphoribosylglycinamide formyltransferase compare
PFLU_RS30160 -2.0 -3.2 ParB/RepB/Spo0J family partition protein compare
PFLU_RS25740 -1.9 -5.7 polynucleotide adenylyltransferase PcnB compare
PFLU_RS01615 -1.9 -3.7 DUF2164 domain-containing protein compare
PFLU_RS28650 -1.9 -6.1 RNA pyrophosphohydrolase compare
PFLU_RS20625 -1.9 -2.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS15310 -1.9 -2.4 YgdI/YgdR family lipoprotein compare
PFLU_RS00530 -1.9 -2.3 DUF2388 domain-containing protein compare
PFLU_RS24090 -1.9 -3.5 Holliday junction branch migration protein RuvA compare
PFLU_RS08410 -1.9 -5.7 HTH-type transcriptional regulator CysB compare
PFLU_RS03555 -1.9 -1.0 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS21495 -1.8 -3.5 TlpA family protein disulfide reductase compare
PFLU_RS04430 -1.8 -8.2 ATP-binding cassette domain-containing protein compare
PFLU_RS26595 -1.8 -2.4 lipoprotein compare
PFLU_RS11380 -1.8 -1.5 sarcosine oxidase subunit delta compare
PFLU_RS25225 -1.8 -6.6 disulfide bond formation protein B compare
PFLU_RS10340 -1.8 -2.0 hypothetical protein compare
PFLU_RS08165 -1.8 -1.8 acyl carrier protein compare
PFLU_RS01485 -1.8 -9.6 cellulase compare
PFLU_RS28310 -1.8 -1.6 response regulator compare
PFLU_RS25645 -1.8 -1.2 acetolactate synthase small subunit compare
PFLU_RS14335 -1.8 -2.5 ABC transporter permease compare
PFLU_RS19165 -1.8 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS18670 -1.8 -2.4 NADH-quinone oxidoreductase subunit M compare
PFLU_RS25925 -1.7 -2.5 RnfH family protein compare
PFLU_RS10595 -1.7 -3.0 hypothetical protein compare
PFLU_RS18675 -1.7 -2.2 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS09980 -1.6 -10.5 peptidase S41 compare
PFLU_RS24335 -1.6 -8.1 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS27265 -1.6 -2.6 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor compare
PFLU_RS25730 -1.6 -9.8 PAS domain S-box protein compare
PFLU_RS25715 -1.6 -8.2 RNA polymerase-binding protein DksA compare
PFLU_RS13715 -1.6 -1.5 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS07725 -1.6 -4.1 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS13885 -1.6 -1.9 hypothetical protein compare
PFLU_RS17750 -1.6 -1.7 pirin family protein compare
PFLU_RS18640 -1.6 -4.0 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS21995 -1.6 -2.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS18095 -1.6 -1.8 GlxA family transcriptional regulator compare
PFLU_RS26635 -1.6 -5.8 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS08180 -1.6 -4.7 ketoacyl-ACP synthase III compare
PFLU_RS22030 -1.5 -2.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS22520 -1.5 -2.2 GntR family transcriptional regulator compare
PFLU_RS01620 -1.5 -6.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS25585 -1.5 -1.5 exodeoxyribonuclease V subunit alpha compare
PFLU_RS02365 -1.5 -7.6 glycosyltransferase compare
PFLU_RS24825 -1.5 -2.0 Fe-S cluster assembly protein IscX compare
PFLU_RS00775 -1.5 -2.9 hypothetical protein compare
PFLU_RS24980 -1.5 -1.7 purine-binding chemotaxis protein CheW compare
PFLU_RS17545 -1.5 -1.0 DUF465 domain-containing protein compare
PFLU_RS04445 -1.5 -4.6 ABC transporter substrate-binding protein compare
PFLU_RS26770 -1.5 -7.2 DedA family protein compare
PFLU_RS31755 -1.5 -1.4 hypothetical protein compare
PFLU_RS03610 -1.5 -4.7 redox-regulated ATPase YchF compare
PFLU_RS27640 -1.5 -1.6 alpha/beta fold hydrolase compare
PFLU_RS08580 -1.5 -3.7 membrane protein compare
PFLU_RS04470 -1.5 -6.9 histidinol dehydrogenase compare
PFLU_RS29550 -1.5 -5.3 ATP-dependent DNA helicase RecG compare
PFLU_RS01965 -1.5 -1.6 ATP-dependent protease subunit HslV compare
PFLU_RS04440 -1.5 -6.9 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS30105 -1.5 -2.1 DeoR family transcriptional regulator compare
PFLU_RS20335 -1.5 -1.7 hypothetical protein compare
PFLU_RS01020 -1.5 -2.5 LysR family transcriptional regulator compare
PFLU_RS02775 -1.4 -1.5 urease accessory protein UreF compare
PFLU_RS25595 -1.4 -1.3 exodeoxyribonuclease V subunit gamma compare
PFLU_RS01625 -1.4 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS08155 -1.4 -3.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS21060 -1.4 -2.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS01665 -1.4 -2.2 glutaredoxin 3 compare
PFLU_RS29155 -1.4 -2.2 mechanosensitive ion channel family protein compare
PFLU_RS04435 -1.4 -4.7 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS15910 -1.4 -1.6 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS04220 -1.4 -5.3 FadR family transcriptional regulator compare
PFLU_RS24560 -1.4 -5.6 site-specific tyrosine recombinase XerD compare
PFLU_RS13795 -1.4 -2.0 hypothetical protein compare
PFLU_RS01895 -1.4 -2.9 phosphoribosyl-ATP diphosphatase compare
PFLU_RS15610 -1.4 -3.8 helix-turn-helix transcriptional regulator compare
PFLU_RS00465 -1.3 -6.9 spore maturation protein compare
PFLU_RS30165 -1.3 -5.4 ParA family protein compare
PFLU_RS28725 -1.3 -6.7 DUF2059 domain-containing protein compare
PFLU_RS02205 -1.3 -5.3 potassium/proton antiporter compare
PFLU_RS28690 -1.3 -7.2 FAD-binding oxidoreductase compare
PFLU_RS15025 -1.3 -3.6 2-keto-4-pentenoate hydratase compare
PFLU_RS07810 -1.3 -7.9 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS25025 -1.3 -2.2 hypothetical protein compare
PFLU_RS02975 -1.3 -4.3 precorrin-3B synthase compare
PFLU_RS14775 -1.3 -1.4 enoyl-CoA hydratase compare
PFLU_RS27755 -1.3 -3.1 glutathione S-transferase compare
PFLU_RS03665 -1.3 -2.9 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS19910 -1.3 -1.3 hypothetical protein compare
PFLU_RS29490 -1.3 -4.7 ribonuclease PH compare
PFLU_RS21615 -1.3 -4.7 chemotaxis protein CheW compare
PFLU_RS26485 -1.2 -2.7 hypothetical protein compare
PFLU_RS23185 -1.2 -6.8 protein-glutamate O-methyltransferase CheR compare
PFLU_RS22010 -1.2 -3.6 threonine-phosphate decarboxylase compare
PFLU_RS23910 -1.2 -3.5 threonylcarbamoyl-AMP synthase compare
PFLU_RS05780 -1.2 -6.1 helix-turn-helix transcriptional regulator compare
PFLU_RS22395 -1.2 -3.3 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS07225 -1.2 -6.7 L-aspartate oxidase compare
PFLU_RS26175 -1.2 -4.2 NADP-specific glutamate dehydrogenase compare
PFLU_RS22045 -1.2 -5.7 peptidase P60 compare
PFLU_RS12175 -1.2 -0.7 methyl-accepting chemotaxis protein compare
PFLU_RS13875 -1.2 -3.8 ImmA/IrrE family metallo-endopeptidase compare
PFLU_RS29900 -1.2 -6.1 DNA helicase II compare
PFLU_RS02460 -1.1 -5.6 alpha/beta fold hydrolase compare
PFLU_RS29975 -1.1 -1.5 ATP-binding cassette domain-containing protein compare
PFLU_RS11850 -1.1 -1.4 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS17450 -1.1 -3.7 carboxynorspermidine decarboxylase compare
PFLU_RS04325 -1.1 -7.1 ribonuclease G compare
PFLU_RS06320 -1.1 -1.5 OmpH family outer membrane protein compare
PFLU_RS27380 -1.1 -6.2 anthranilate synthase component I compare
PFLU_RS26735 -1.1 -4.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in pH experiments

For pH D-Glucose across organisms