Experiment set4IT039 for Methanococcus maripaludis S2

Compare to:

H2 deepwell acetate FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS03015 -8.7 -6.9 GTP 3' 8-cyclase MoaA compare
MMP_RS07600 -7.8 -1.9 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS06895 -7.5 -1.6 selenocysteine-specific translation elongation factor compare
MMP_RS02240 -7.5 -2.2 methanogenesis marker 7 protein compare
MMP_RS06400 -6.8 -1.4 4Fe-4S binding protein compare
MMP_RS02195 -6.8 -3.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS05930 -6.7 -1.8 3-isopropylmalate dehydratase large subunit compare
MMP_RS09020 -6.6 -1.4 hypothetical protein compare
MMP_RS08435 -6.5 -1.6 Era-like GTP-binding protein compare
MMP_RS01265 -6.4 -2.6 hypothetical protein compare
MMP_RS04605 -6.4 -3.4 cobalt ECF transporter T component CbiQ compare
MMP_RS03400 -6.3 -2.4 archease compare
MMP_RS04710 -6.3 -1.3 hypothetical protein compare
MMP_RS01380 -6.2 -3.1 PHP domain-containing protein compare
MMP_RS01890 -6.2 -2.5 nucleotide sugar dehydrogenase compare
MMP_RS05515 -6.2 -5.5 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01885 -6.1 -7.4 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS08790 -6.1 -1.5 translation initiation factor IF-2 subunit alpha compare
MMP_RS03435 -6.1 -1.5 ketol-acid reductoisomerase compare
MMP_RS05845 -6.0 -1.4 tRNA-intron lyase compare
MMP_RS01875 -6.0 -11.4 N-acetyltransferase compare
MMP_RS07575 -5.8 -3.1 RNA ligase partner protein compare
MMP_RS03700 -5.8 -10.6 sodium:proton antiporter compare
MMP_RS01020 -5.8 -0.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01880 -5.8 -7.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS06270 -5.8 -6.0 TIGR00300 family protein compare
MMP_RS07635 -5.7 -7.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS04615 -5.7 -3.1 PDGLE domain-containing protein compare
MMP_RS08210 -5.6 -1.9 phosphatidylglycerophosphatase A compare
MMP_RS06295 -5.6 -6.9 methanogenesis marker 14 protein compare
MMP_RS07845 -5.6 -2.0 LL-diaminopimelate aminotransferase compare
MMP_RS03025 -5.6 -5.4 molybdenum cofactor guanylyltransferase compare
MMP_RS03960 -5.6 -0.7 hypothetical protein compare
MMP_RS02280 -5.6 -0.7 DUF211 domain-containing protein compare
MMP_RS03315 -5.6 -1.2 ferrous iron transport protein A compare
MMP_RS07630 -5.5 -1.1 ATP-binding cassette domain-containing protein compare
MMP_RS08650 -5.5 -2.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01175 -5.4 -3.7 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04780 -5.4 -1.8 ribonuclease P compare
MMP_RS07730 -5.4 -1.5 pyruvate synthase subunit beta compare
MMP_RS06730 -5.4 -1.8 phosphopantothenate/pantothenate synthetase compare
MMP_RS03035 -5.4 -3.5 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS01830 -5.4 -0.9 tRNA-Val compare
MMP_RS07075 -5.4 -3.6 phosphomannomutase/phosphoglucomutase compare
MMP_RS04720 -5.4 -2.2 DedA family protein compare
MMP_RS06020 -5.4 -4.1 archaeoflavoprotein AfpA compare
MMP_RS02145 -5.3 -7.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS06925 -5.2 -1.9 ribonuclease VapC4 compare
MMP_RS01795 -5.2 -1.5 methanogenesis marker 6 protein compare
MMP_RS04685 -5.2 -2.8 DUF126 domain-containing protein compare
MMP_RS04500 -5.2 -19.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS03640 -5.2 -3.6 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS03600 -5.2 -1.9 triose-phosphate isomerase compare
MMP_RS08105 -5.2 -6.2 6-carboxyhexanoate--CoA ligase compare
MMP_RS06350 -5.1 -5.6 HesA/MoeB/ThiF family protein compare
MMP_RS01800 -5.1 -3.7 TIGR00303 family protein compare
MMP_RS01325 -5.1 -2.0 dihydroneopterin aldolase family protein compare
MMP_RS06370 -5.1 -4.3 biotin synthase BioB compare
MMP_RS06475 -5.1 -4.3 FAD-dependent oxidoreductase compare
MMP_RS01610 -5.0 -2.7 hypothetical protein compare
MMP_RS00305 -5.0 -1.3 phosphoribosyl-ATP diphosphatase compare
MMP_RS02900 -5.0 -0.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS06285 -5.0 -2.1 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS02875 -4.9 -9.2 chorismate pyruvate-lyase family protein compare
MMP_RS08095 -4.9 -6.5 dethiobiotin synthase compare
MMP_RS04620 -4.9 -13.1 cobalt transporter CbiM compare
MMP_RS05555 -4.8 -0.8 DUF4040 domain-containing protein compare
MMP_RS07380 -4.8 -1.7 transcription elongation factor Spt5 compare
MMP_RS08720 -4.8 -1.1 4Fe-4S binding protein compare
MMP_RS07555 -4.8 -0.6 monovalent cation/H+ antiporter subunit E compare
MMP_RS06355 -4.8 -2.1 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS07625 -4.7 -3.3 cobalt ECF transporter T component CbiQ compare
MMP_RS00810 -4.7 -8.4 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS07200 -4.7 -7.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS06625 -4.7 -1.9 DNA primase compare
MMP_RS01925 -4.6 -10.0 DUF1616 domain-containing protein compare
MMP_RS00895 -4.6 -2.8 hypothetical protein compare
MMP_RS00300 -4.6 -0.5 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06230 -4.5 -2.0 helix-turn-helix domain-containing protein compare
MMP_RS06340 -4.5 -8.0 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS07005 -4.5 -0.5 4Fe-4S binding protein compare
MMP_RS01385 -4.4 -0.5 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00985 -4.4 -4.8 CDC48 family AAA ATPase compare
MMP_RS05345 -4.4 -8.4 hypothetical protein compare
MMP_RS01500 -4.3 -1.9 CBS domain-containing protein compare
MMP_RS08820 -4.3 -5.1 hypothetical protein compare
MMP_RS01005 -4.3 -1.0 riboflavin synthase compare
MMP_RS07390 -4.3 -2.0 cell division protein FtsZ compare
MMP_RS05265 -4.3 -1.7 2-isopropylmalate synthase compare
MMP_RS06130 -4.3 -3.7 peptidylprolyl isomerase compare
MMP_RS02135 -4.2 -3.9 DUF5612 domain-containing protein compare
MMP_RS07750 -4.1 -3.6 DUF357 domain-containing protein compare
MMP_RS01900 -4.0 -16.9 hypothetical protein compare
MMP_RS01905 -4.0 -13.0 glycosyltransferase compare
MMP_RS02355 -4.0 -2.2 30S ribosomal protein S27ae compare
MMP_RS03580 -4.0 -3.3 signal recognition particle-docking protein FtsY compare
MMP_RS07645 -3.9 -4.9 aldehyde dehydrogenase family protein compare
MMP_RS07620 -3.9 -4.3 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS08300 -3.9 -0.8 metal-sulfur cluster assembly factor compare
MMP_RS01975 -3.9 -14.1 hypothetical protein compare
MMP_RS01220 -3.8 -6.4 hypothetical protein compare
MMP_RS01225 -3.8 -3.9 DUF5379 domain-containing protein compare
MMP_RS04775 -3.8 -3.5 adenosylhomocysteinase compare
MMP_RS04890 -3.8 -0.6 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS00515 -3.8 -0.6 DUF655 domain-containing protein compare
MMP_RS00110 -3.8 -2.4 hypothetical protein compare
MMP_RS00695 -3.7 -0.6 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS07615 -3.7 -5.8 energy-coupling factor ABC transporter permease compare
MMP_RS03155 -3.7 -8.8 precorrin-6A reductase compare
MMP_RS08745 -3.7 -5.0 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07580 -3.7 -2.7 DUF356 domain-containing protein compare
MMP_RS06670 -3.6 -5.6 glucose-6-phosphate isomerase compare
MMP_RS04585 -3.6 -9.9 AIR synthase related protein compare
MMP_RS06485 -3.6 -0.9 zinc ribbon domain-containing protein compare
MMP_RS06120 -3.5 -1.7 UPF0147 family protein compare
MMP_RS07755 -3.5 -0.8 DUF555 domain-containing protein compare
MMP_RS06725 -3.5 -12.3 hypothetical protein compare
MMP_RS07875 -3.5 -4.0 hypothetical protein compare
MMP_RS02345 -3.4 -3.3 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS00520 -3.4 -1.3 RNA polymerase Rpb4 family protein compare
MMP_RS06315 -3.4 -0.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS00115 -3.4 -11.5 radical SAM protein compare
MMP_RS02800 -3.4 -3.5 nucleotidyltransferase domain-containing protein compare
MMP_RS07525 -3.4 -7.2 4Fe-4S binding protein compare
MMP_RS07355 -3.4 -0.8 transcription factor S compare
MMP_RS01755 -3.3 -1.0 DUF2097 domain-containing protein compare
MMP_RS06940 -3.3 -3.9 polyprenyl diphosphate synthase compare
MMP_RS06885 -3.3 -2.3 50S ribosome-binding GTPase compare
MMP_RS08370 -3.3 -0.6 cation:proton antiporter subunit C compare
MMP_RS05925 -3.3 -3.1 small nuclear ribonucleoprotein compare
MMP_RS05550 -3.3 -0.5 cation:proton antiporter compare
MMP_RS07545 -3.3 -0.8 HTH domain-containing protein compare
MMP_RS06105 -3.3 -9.5 hydrogenase maturation peptidase HycI compare
MMP_RS08635 -3.3 -1.6 UbiA family prenyltransferase compare
MMP_RS06035 -3.2 -10.0 glycosyltransferase family 2 protein compare
MMP_RS05580 -3.2 -14.3 glycosyltransferase compare
MMP_RS03145 -3.2 -6.1 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS00685 -3.2 -3.1 2-phospho-L-lactate guanylyltransferase compare
MMP_RS03095 -3.2 -7.0 diphthine synthase compare
MMP_RS08100 -3.2 -6.6 8-amino-7-oxononanoate synthase compare
MMP_RS01700 -3.2 -0.7 dihydroxy-acid dehydratase compare
MMP_RS07710 -3.2 -6.5 cell division protein FtsZ compare
MMP_RS05425 -3.2 -4.1 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS05640 -3.2 -5.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS05250 -3.1 -1.2 NFYB/HAP3 family transcription factor subunit compare
MMP_RS07195 -3.1 -9.5 M20 family metallo-hydrolase compare
MMP_RS01960 -3.1 -0.5 hypothetical protein compare
MMP_RS02010 -3.0 -4.1 PHP domain-containing protein compare
MMP_RS01665 -3.0 -3.1 DUF2111 domain-containing protein compare
MMP_RS03140 -3.0 -10.0 hypothetical protein compare
MMP_RS08330 -2.9 -5.8 NADH-quinone oxidoreductase subunit H compare
MMP_RS06630 -2.9 -0.8 UPF0058 family protein compare
MMP_RS07435 -2.9 -1.6 GMP synthase subunit A compare
MMP_RS00750 -2.9 -1.9 fumarate hydratase compare
MMP_RS08715 -2.9 -1.6 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01955 -2.8 -2.2 hypothetical protein compare
MMP_RS05635 -2.8 -7.8 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS08460 -2.8 -1.7 proteasome-activating nucleotidase compare
MMP_RS07425 -2.8 -5.7 GTP-binding protein compare
MMP_RS02165 -2.6 -6.1 tRNA-dihydrouridine synthase compare
MMP_RS05430 -2.6 -3.3 TIGR00288 family NYN domain-containing protein compare
MMP_RS08440 -2.6 -1.7 cell division protein SepF compare
MMP_RS07330 -2.6 -15.5 membrane protein compare
MMP_RS06980 -2.6 -5.1 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS01970 -2.6 -8.8 TIGR04279 domain-containing protein compare
MMP_RS00320 -2.6 -1.2 class I SAM-dependent methyltransferase compare
MMP_RS03445 -2.5 -0.8 methanogenesis marker 17 protein compare
MMP_RS01545 -2.5 -0.9 CBS domain-containing protein compare
MMP_RS01910 -2.5 -7.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS02190 -2.5 -2.2 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS08840 -2.5 -7.9 class I SAM-dependent methyltransferase compare
MMP_RS05920 -2.5 -0.5 50S ribosomal protein L37e compare
MMP_RS07605 -2.5 -2.6 diadenylate cyclase compare
MMP_RS07445 -2.4 -3.8 helix-turn-helix domain-containing protein compare
MMP_RS06685 -2.4 -8.8 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06900 -2.4 -2.5 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS08365 -2.4 -3.3 energy conserving hydrogenase EhbF compare
MMP_RS02175 -2.4 -0.7 DUF1611 domain-containing protein compare
MMP_RS07735 -2.3 -0.7 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS05815 -2.3 -1.7 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS00735 -2.3 -3.0 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS08340 -2.3 -3.2 4Fe-4S binding protein compare
MMP_RS07420 -2.3 -3.3 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS03475 -2.2 -0.5 hypothetical protein compare
MMP_RS05850 -2.2 -3.1 Ldh family oxidoreductase compare
MMP_RS01840 -2.2 -5.3 TIGR00289 family protein compare
MMP_RS00900 -2.2 -1.6 50S ribosomal protein L39e compare
MMP_RS05525 -2.2 -5.3 calcium/sodium antiporter compare
MMP_RS05950 -2.2 -9.8 nickel-dependent hydrogenase large subunit compare
MMP_RS05445 -2.2 -7.5 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS02235 -2.2 -5.7 CBS domain-containing protein compare
MMP_RS06855 -2.1 -5.4 hypothetical protein compare
MMP_RS04875 -2.1 -4.5 energy-converting hydrogenase B subunit P compare
MMP_RS06215 -2.1 -2.1 30S ribosomal protein S6e compare
MMP_RS07820 -2.1 -2.9 UPF0104 family protein compare
MMP_RS05245 -2.0 -6.6 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS08360 -2.0 -3.3 hypothetical protein compare
MMP_RS01895 -2.0 -7.8 flippase compare
MMP_RS06110 -2.0 -2.8 ATP-dependent protease LonB compare
MMP_RS07955 -1.9 -3.9 FumA C-terminus/TtdB family hydratase beta subunit compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 casamino acids across organisms