Experiment set4IT039 for Methanococcus maripaludis S2

Compare to:

H2 deepwell acetate FREE

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS08725 +2.4 1.6 Ni/Fe hydrogenase subunit alpha compare
MMP_RS03340 +2.2 1.9 ABC transporter ATP-binding protein compare
MMP_RS08930 +1.9 2.0 hypothetical protein compare
MMP_RS08455 +1.7 4.6 multiprotein bridging factor aMBF1 compare
MMP_RS02415 +1.4 1.3 site-specific integrase compare
MMP_RS06905 +1.4 2.5 hypothetical protein compare
MMP_RS04945 +1.3 3.0 hypothetical protein compare
MMP_RS07905 +1.3 4.6 DUF3343 domain-containing protein compare
MMP_RS01650 +1.2 1.1 sulfurtransferase TusA family protein compare
MMP_RS05955 +1.2 1.7 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS02045 +1.2 1.8 tRNA-Met compare
MMP_RS08775 +1.1 3.5 methanogenesis marker 9 domain-containing protein compare
MMP_RS02745 +1.1 1.5 hypothetical protein compare
MMP_RS06765 +1.1 3.6 flap endonuclease-1 compare
MMP_RS00295 +1.1 1.3 gamma carbonic anhydrase family protein compare
MMP_RS07885 +1.1 2.0 tripartite tricarboxylate transporter permease compare
MMP_RS08415 +1.1 2.7 radical SAM protein compare
MMP_RS02720 +1.0 1.5 molybdate ABC transporter substrate-binding protein compare
MMP_RS03300 +1.0 0.8 TOBE domain-containing protein compare
MMP_RS07560 +1.0 1.7 prefoldin subunit alpha compare
MMP_RS03520 +1.0 1.8 YwbE family protein compare
MMP_RS02790 +1.0 1.1 class III signal peptide-containing protein compare
MMP_RS07860 +1.0 0.5 hypothetical protein compare
MMP_RS07890 +1.0 1.9 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS08670 +1.0 2.7 metallophosphoesterase compare
MMP_RS08580 +1.0 1.2 flagellin compare
MMP_RS06540 +1.0 2.5 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS04145 +1.0 1.4 hypothetical protein compare
MMP_RS08700 +1.0 3.5 hypothetical protein compare
MMP_RS06990 +0.9 1.5 CatB-related O-acetyltransferase compare
MMP_RS00675 +0.9 0.8 nitroreductase family protein compare
MMP_RS08475 +0.9 3.1 ABC transporter permease compare
MMP_RS08850 +0.9 5.1 hypothetical protein compare
MMP_RS08310 +0.9 1.5 TMEM165/GDT1 family protein compare
MMP_RS01675 +0.9 1.3 hypothetical protein compare
MMP_RS00795 +0.9 4.2 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS07765 +0.9 4.0 sodium:alanine symporter family protein compare
MMP_RS06155 +0.9 1.5 DUF4186 domain-containing protein compare
MMP_RS01440 +0.9 1.7 NAAT family transporter compare
MMP_RS08480 +0.9 4.1 molybdate ABC transporter substrate-binding protein compare
MMP_RS06655 +0.9 3.6 glycoside hydrolase family 15 protein compare
MMP_RS01455 +0.8 2.5 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS08405 +0.8 2.9 MFS transporter compare
MMP_RS08620 +0.8 2.8 flagellar accessory protein FlaH compare
MMP_RS00960 +0.8 1.8 iron export ABC transporter permease subunit FetB compare
MMP_RS06335 +0.8 1.6 HAD family hydrolase compare
MMP_RS08130 +0.8 2.7 IGHMBP2 family helicase compare
MMP_RS08500 +0.8 1.9 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS01435 +0.8 2.6 DMT family transporter compare
MMP_RS08640 +0.8 3.7 TIM barrel protein compare
MMP_RS07335 +0.8 2.3 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMP_RS01460 +0.8 2.6 hypothetical protein compare
MMP_RS00660 +0.8 3.4 alkaline phosphatase family protein compare
MMP_RS08080 +0.8 3.4 YchF/TatD family DNA exonuclease compare
MMP_RS06710 +0.8 2.5 selenium-binding protein compare
MMP_RS00990 +0.8 2.8 hypothetical protein compare
MMP_RS08265 +0.7 2.3 rubrerythrin compare
MMP_RS00710 +0.7 1.3 hypothetical protein compare
MMP_RS05825 +0.7 1.5 peptidyl-prolyl cis-trans isomerase compare
MMP_RS00635 +0.7 2.0 energy-coupling factor transporter transmembrane protein EcfT compare
MMP_RS00700 +0.7 2.9 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS01785 +0.7 1.9 hypothetical protein compare
MMP_RS06300 +0.7 2.5 ABC transporter substrate-binding protein compare
MMP_RS08275 +0.7 3.2 hypothetical protein compare
MMP_RS02370 +0.7 1.5 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS08260 +0.7 1.9 DUF99 family protein compare
MMP_RS01210 +0.7 2.7 sodium:solute symporter compare
MMP_RS01525 +0.7 1.0 nucleoside-diphosphate kinase compare
MMP_RS07985 +0.7 4.1 nitroreductase family protein compare
MMP_RS08285 +0.7 2.2 serine/threonine protein kinase compare
MMP_RS03490 +0.7 0.9 DUF2115 domain-containing protein compare
MMP_RS06075 +0.7 1.9 class I SAM-dependent methyltransferase compare
MMP_RS08160 +0.7 1.9 EamA family transporter compare
MMP_RS04260 +0.7 1.5 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS01630 +0.7 1.5 N-glycosylase/DNA lyase compare
MMP_RS00060 +0.7 0.8 3-dehydroquinate synthase II compare
MMP_RS04050 +0.7 1.5 hypothetical protein compare
MMP_RS06460 +0.7 2.1 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMP_RS05665 +0.7 1.5 phosphate ABC transporter permease subunit PstC compare
MMP_RS08325 +0.7 2.6 hypothetical protein compare
MMP_RS00280 +0.7 2.6 DUF2118 domain-containing protein compare
MMP_RS01470 +0.7 1.8 ATP-binding cassette domain-containing protein compare
MMP_RS07140 +0.7 3.5 TIGR00341 family protein compare
MMP_RS07800 +0.7 2.1 ATP-binding cassette domain-containing protein compare
MMP_RS00430 +0.7 2.5 hypothetical protein compare
MMP_RS08390 +0.7 1.2 DUF5400 domain-containing protein compare
MMP_RS08685 +0.7 3.1 hypothetical protein compare
MMP_RS06910 +0.7 2.3 RlmF-related methyltransferase compare
MMP_RS08175 +0.6 1.7 7-cyano-7-deazaguanine synthase compare
MMP_RS00455 +0.6 2.4 orotate phosphoribosyltransferase-like protein compare
MMP_RS02490 +0.6 0.9 hypothetical protein compare
MMP_RS07925 +0.6 1.3 haloacid dehalogenase compare
MMP_RS00910 +0.6 2.4 2-phosphosulfolactate phosphatase compare
MMP_RS03740 +0.6 1.7 indolepyruvate oxidoreductase subunit beta compare
MMP_RS02965 +0.6 1.3 carboxymuconolactone decarboxylase family protein compare
MMP_RS07795 +0.6 3.3 site-2 protease family protein compare
MMP_RS06585 +0.6 0.8 DMT family protein compare
MMP_RS08395 +0.6 1.5 DsrE family protein compare
MMP_RS06375 +0.6 1.5 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS01370 +0.6 2.3 acetate--CoA ligase family protein compare
MMP_RS02610 +0.6 1.3 DUF2162 domain-containing protein compare
MMP_RS06675 +0.6 2.9 ADP-specific phosphofructokinase compare
MMP_RS08845 +0.6 1.5 archaellum operon transcriptional activator EarA family protein compare
MMP_RS01130 +0.6 1.6 flavoprotein compare
MMP_RS07095 +0.6 1.4 PspC domain-containing protein compare
MMP_RS00855 +0.6 1.3 DUF367 family protein compare
MMP_RS04965 +0.6 2.5 thioredoxin family protein compare
MMP_RS09030 +0.6 1.9 hypothetical protein compare
MMP_RS07550 +0.6 2.0 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS06445 +0.6 1.0 DUF89 domain-containing protein compare
MMP_RS06970 +0.6 2.0 ribosomal protein S18-alanine N-acetyltransferase compare
MMP_RS02315 +0.6 1.2 RimK family alpha-L-glutamate ligase compare
MMP_RS07155 +0.6 2.0 MFS transporter compare
MMP_RS00380 +0.6 1.2 P-II family nitrogen regulator compare
MMP_RS06545 +0.6 1.4 ferredoxin family protein compare
MMP_RS08205 +0.6 1.9 stage II sporulation protein M compare
MMP_RS08385 +0.6 2.1 ABC transporter substrate-binding protein compare
MMP_RS07125 +0.6 1.5 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS04305 +0.6 1.1 hypothetical protein compare
MMP_RS07185 +0.6 2.6 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS08400 +0.6 1.0 MJ0307 family thioredoxin compare
MMP_RS08085 +0.6 2.8 hypothetical protein compare
MMP_RS01320 +0.5 1.2 hypothetical protein compare
MMP_RS06365 +0.5 1.0 hypothetical protein compare
MMP_RS01075 +0.5 0.4 hypothetical protein compare
MMP_RS07570 +0.5 1.7 nucleotidyltransferase family protein compare
MMP_RS04360 +0.5 1.1 hypothetical protein compare
MMP_RS02450 +0.5 1.4 hypothetical protein compare
MMP_RS00645 +0.5 1.8 iron ABC transporter permease compare
MMP_RS08245 +0.5 1.8 DUF4013 domain-containing protein compare
MMP_RS05780 +0.5 1.6 multidrug resistance efflux transporter family protein compare
MMP_RS06045 +0.5 1.9 DNA polymerase compare
MMP_RS07590 +0.5 2.0 hypothetical protein compare
MMP_RS01485 +0.5 2.2 right-handed parallel beta-helix repeat-containing protein compare
MMP_RS01140 +0.5 0.8 molybdate ABC transporter permease subunit compare
MMP_RS01010 +0.5 1.7 DUF4352 domain-containing protein compare
MMP_RS05155 +0.5 2.4 hypothetical protein compare
MMP_RS08250 +0.5 1.9 pyruvate kinase compare
MMP_RS05360 +0.5 1.1 hypothetical protein compare
MMP_RS07150 +0.5 1.4 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS09065 +0.5 2.5 hypothetical protein compare
MMP_RS00545 +0.5 1.2 XRE family transcriptional regulator compare
MMP_RS07650 +0.5 2.7 TldD/PmbA family protein compare
MMP_RS04520 +0.5 1.0 nucleoside deaminase compare
MMP_RS01110 +0.5 1.2 FmdE family protein compare
MMP_RS07085 +0.5 1.7 ribonuclease HII compare
MMP_RS00540 +0.5 1.5 PLP-dependent aminotransferase family protein compare
MMP_RS05365 +0.5 1.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS06070 +0.5 2.4 iron ABC transporter substrate-binding protein compare
MMP_RS07815 +0.5 0.5 DUF2120 domain-containing protein compare
MMP_RS07915 +0.5 1.1 DUF4870 domain-containing protein compare
MMP_RS01055 +0.5 1.4 hypothetical protein compare
MMP_RS06495 +0.5 1.0 YkgJ family cysteine cluster protein compare
MMP_RS00950 +0.5 1.6 site-2 protease family protein compare
MMP_RS08470 +0.5 1.2 ATP-binding cassette domain-containing protein compare
MMP_RS00980 +0.5 1.5 hypothetical protein compare
MMP_RS00480 +0.5 1.4 hypothetical protein compare
MMP_RS06520 +0.5 1.2 DUF1786 domain-containing protein compare
MMP_RS06150 +0.5 1.6 hypothetical protein compare
MMP_RS07840 +0.5 0.6 ribonuclease III compare
MMP_RS00705 +0.4 0.8 hypothetical protein compare
MMP_RS01160 +0.4 1.5 DMT family transporter compare
MMP_RS00670 +0.4 1.0 TIM barrel protein compare
MMP_RS01765 +0.4 1.1 HIT family protein compare
MMP_RS03875 +0.4 0.6 hypothetical protein compare
MMP_RS02590 +0.4 1.6 low molecular weight phosphatase family protein compare
MMP_RS00155 +0.4 1.2 heavy metal-binding domain-containing protein compare
MMP_RS07805 +0.4 1.3 ABC transporter permease compare
MMP_RS07855 +0.4 1.9 class I SAM-dependent methyltransferase compare
MMP_RS04350 +0.4 1.8 2-hydroxyacyl-CoA dehydratase family protein compare
MMP_RS07345 +0.4 1.1 glycine synthesis protein GlyXL (from data) compare
MMP_RS00650 +0.4 1.7 ABC transporter ATP-binding protein compare
MMP_RS00400 +0.4 1.4 tributyrin esterase compare
MMP_RS07100 +0.4 1.6 hypothetical protein compare
MMP_RS07970 +0.4 0.8 hypothetical protein compare
MMP_RS07850 +0.4 0.7 prephenate dehydratase compare
MMP_RS02890 +0.4 1.2 TIGR00296 family protein compare
MMP_RS03410 +0.4 1.5 hypothetical protein compare
MMP_RS08555 +0.4 0.8 hypothetical protein compare
MMP_RS06745 +0.4 0.9 DUF2119 domain-containing protein compare
MMP_RS08570 +0.4 1.7 coenzyme F420-0:L-glutamate ligase compare
MMP_RS01420 +0.4 0.4 hypothetical protein compare
MMP_RS03220 +0.4 0.9 RNA 2' 3'-cyclic phosphodiesterase compare
MMP_RS01570 +0.4 0.5 hypothetical protein compare
MMP_RS00395 +0.4 0.5 MGMT family protein compare
MMP_RS02295 +0.4 1.8 TatD family hydrolase compare
MMP_RS08610 +0.4 1.3 flagellar protein F compare
MMP_RS02440 +0.4 1.9 hypothetical protein compare
MMP_RS04725 +0.4 1.6 hypothetical protein compare
MMP_RS05455 +0.4 1.4 DUF167 domain-containing protein compare
MMP_RS00930 +0.4 1.0 ABC transporter permease compare
MMP_RS03085 +0.4 1.5 endonuclease III compare
MMP_RS07715 +0.4 1.2 YfcE family phosphodiesterase compare
MMP_RS06430 +0.4 1.3 6-carboxytetrahydropterin synthase QueD compare
MMP_RS04985 +0.4 1.1 DUF2180 family protein compare
MMP_RS02910 +0.4 1.1 ABC transporter substrate-binding protein compare
MMP_RS03895 +0.4 0.5 hypothetical protein compare
MMP_RS02290 +0.4 1.4 MBL fold metallo-hydrolase compare
MMP_RS05980 +0.4 1.2 ferritin compare
MMP_RS08490 +0.4 2.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 casamino acids across organisms