Experiment set4IT039 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

MoLS4 with L-Tryptophan nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
DVU2206 +4.7 27.1 conserved hypothetical protein (TIGR) compare
DVU0043 fliQ +1.5 8.7 flagellar biosynthetic protein FliQ (TIGR) compare
DVU0793 +1.5 12.1 hypothetical protein (TIGR) compare
DVU0311 +1.4 9.4 flagellar assembly protein FliH, putative (TIGR) compare
DVU0046 fliN +1.3 9.2 flagellar motor switch protein FliN (TIGR) compare
DVU0314 fliE +1.3 4.7 flagellar basal body component FliE (TIGR) compare
DVU0876 +1.3 9.8 metallo-beta-lactamase family protein (TIGR) compare
DVU3234 +1.3 7.4 flagellar biosynthetic protein FliR (TIGR) compare
DVU0312 fliG +1.3 9.6 flagellar motor switch protein FliG (TIGR) compare
DVU1862 +1.3 6.7 GGDEF domain protein (TIGR) compare
DVU0315 flgC +1.3 9.5 flagellar basal-body rod protein FlgC (TIGR) compare
DVU0310 fliI +1.3 9.9 flagellum-specific ATP synthase FliI (TIGR) compare
DVU2045 +1.2 7.5 hypothetical protein (TIGR) compare
DVU0910 fliM +1.2 7.6 flagellar motor switch protein FliM (TIGR) compare
DVU0044 fliP +1.2 9.1 flagellar biosynthetic protein fliP (TIGR) compare
DVU3233 flhB +1.2 10.2 flagellar biosynthetic protein FlhB (TIGR) compare
DVU0034 +1.2 8.1 DSBA-like thioredoxin domain protein (TIGR) compare
DVU0512 flgF +1.2 9.0 flagellar basal-body rod protein, putative (TIGR) compare
DVU1682 +1.2 6.1 GAF domain protein (TIGR) compare
DVU1263 pppA +1.2 5.7 type IV prepilin-like proteins leader peptidase (TIGR) compare
DVU3227 +1.2 5.5 flagellar basal body-associated protein, putative (TIGR) compare
DVU0514 +1.2 8.7 FlgA family protein (TIGR) compare
DVU0045 +1.2 7.0 flagellar biosynthesis protein, FliO, putative (TIGR) compare
DVU0513 flgG +1.2 8.4 flagellar basal-body rod protein FlgG (TIGR) compare
DVU0913 +1.2 8.6 conserved hypothetical protein (TIGR) compare
DVU1444 flgD +1.2 6.3 basal-body rod modification protein FlgD (TIGR) compare
DVU2048 +1.1 1.2 hypothetical protein (TIGR) compare
DVU3232 flhA +1.1 9.6 flagellar biosynthetic protein FlhA (TIGR) compare
DVU0516 flgI +1.1 9.6 flagellar P-ring protein FlgI (TIGR) compare
DVU2896 +1.1 9.5 TPR domain protein (TIGR) compare
DVU2203 +1.1 1.6 endoribonuclease, L-PSP family (TIGR) compare
DORF10286 +1.1 4.5 no description compare
DVU3229 fliA +1.0 6.8 RNA polymerase sigma factor for flagellar operon FliA (TIGR) compare
DVU0313 fliF +1.0 7.7 flagellar M-ring protein FliF (TIGR) compare
DVU1863 +1.0 8.7 flagellar synthesis regulator FleN, putative (TIGR) compare
DVU0316 flgB +1.0 3.4 flagellar basal-body rod protein FlgB (TIGR) compare
DVU2510 +1.0 1.0 penicillin-binding protein (TIGR) compare
DVU2894 flrA +1.0 7.2 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU0515 flgH +1.0 7.3 flagellar L-ring protein FlgH (TIGR) compare
DORF8192 +1.0 3.3 SEED: FIG00606834: hypothetical protein compare
DVU2669 +1.0 3.2 conserved domain protein (TIGR) compare
DVU0859 +1.0 5.8 hypothetical protein (TIGR) compare
DVU0047 +1.0 4.8 flagellar protein FliL (TIGR) compare
DVU1445 +0.9 7.0 flagellar hook-length control domain protein (TIGR) compare
DVU1273 +0.9 7.0 bacterial type II/III secretion system protein (TIGR) compare
DVU1726 +0.9 1.5 hypothetical protein (TIGR) compare
DVU1272 gspE +0.9 7.1 general secretion pathway protein E, putative (TIGR) compare
DVU0912 +0.9 4.8 conserved domain protein (TIGR) compare
DVU1271 +0.9 6.2 general secretion pathway protein F, putative (TIGR) compare
DVU0307 +0.9 6.6 flagella basal body rod domain protein (TIGR) compare
DVU0519 +0.9 7.9 flagellar hook-associated protein FlgK, putative (TIGR) compare
DVU1276 +0.9 7.0 hypothetical protein (TIGR) compare
DVU1363 rfbD +0.9 4.5 dTDP-4-dehydrorhamnose reductase (TIGR) compare
DVU2915 +0.9 3.3 hypothetical protein (TIGR) compare
DVU2867 +0.9 1.5 holin (TIGR) compare
DVU1268 +0.9 4.2 hypothetical protein (TIGR) compare
DVU1075 rnpA +0.9 0.7 ribonuclease P protein component (TIGR) compare
DVU1265 +0.9 6.1 hypothetical protein (TIGR) compare
DVU2512 mraW +0.9 3.2 S-adenosyl-methyltransferase MraW (TIGR) compare
DVU1266 +0.9 6.8 hypothetical protein (TIGR) compare
DVU1274 +0.8 4.3 hypothetical protein (TIGR) compare
DVU1237 glnP +0.8 2.4 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) compare
DVU0410 +0.8 5.6 hypothetical protein (TIGR) compare
DVU1251 +0.8 2.2 hypothetical protein (TIGR) compare
DVU3027 glcD +0.8 2.8 glycolate oxidase, subunit GlcD (TIGR) compare
DVU1267 +0.8 4.4 hypothetical protein (TIGR) compare
DVU3360 parB +0.8 5.5 ParB family protein (TIGR) compare
DVU3387 +0.8 6.1 hypothetical protein (TIGR) compare
DVU1264 +0.8 5.2 transglycosylase SLT domain protein (TIGR) compare
DORF10446 +0.8 4.2 SEED: FIG00604570: hypothetical protein compare
DVU1838 trxB-2 +0.8 3.6 thioredoxin reductase (TIGR) compare
DVU1443 flgE +0.8 5.0 flagellar hook protein FlgE (TIGR) compare
DVU0698 rfbC +0.8 3.7 dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR) compare
DVU1275 +0.7 4.8 hypothetical protein (TIGR) compare
DVU1465 +0.7 6.0 CgeB family protein (TIGR) compare
DVU1079 trmE +0.7 1.8 tRNA modification GTPase TrmE (TIGR) compare
DVU0518 +0.7 5.1 hypothetical protein (TIGR) compare
DVU0318 +0.7 1.8 TPR domain protein (TIGR) compare
DVU1446 +0.7 5.3 heptosyltransferase family protein (TIGR) compare
DVU2287 +0.7 1.0 hydrogenase, CooK subunit, selenocysteine-containing, putative (TIGR) compare
DVU2400 +0.7 3.3 hydrogenase, putative (TIGR) compare
DVU0858 +0.7 4.5 lipoprotein, putative (TIGR) compare
DVU2553 nifU-3 +0.7 2.2 NifU family protein (TIGR) compare
DVU1464 +0.7 5.0 heptosyltransferase family protein (TIGR) compare
DVU1174 +0.7 1.9 hypothetical protein (TIGR) compare
DVU0863 +0.7 5.5 flagellar hook-associated protein 2, putative (TIGR) compare
DVU2966 +0.7 4.8 response regulator (TIGR) compare
DVU0520 +0.6 5.3 flagellar hook-associated protein FlgL, putative (TIGR) compare
DVU2391 +0.6 0.6 hypothetical protein (TIGR) compare
DVU2323 +0.6 3.0 hypothetical protein (TIGR) compare
DVU2115 +0.6 1.2 hypothetical protein (TIGR) compare
DVU1063 flrC +0.6 3.9 transcriptional regulatory protein (TIGR) compare
DVU2609 +0.6 3.8 chemotaxis MotB protein, putative (TIGR) compare
DVU1944 oorD +0.6 1.2 pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit, putative (TIGR) compare
DVU0862 +0.6 3.2 flagellar protein FliS/hypothetical protein, fusion (TIGR) compare
DVU1418 hydH +0.6 4.7 sensory box histidine kinase (TIGR) compare
DVU0420 +0.6 0.9 hypothetical protein (TIGR) compare
DORF25031 +0.6 2.7 SEED: FIG00606465: hypothetical protein compare
DVU1470 ppiC +0.6 1.7 peptidyl-prolyl cis-trans isomerase C (TIGR) compare
DVU3289 +0.6 2.6 hypothetical protein (TIGR) compare
DVU1407 +0.6 2.5 radical SAM domain protein (TIGR) compare
DVU2961 +0.6 2.3 hypothetical protein (TIGR) compare
DVU0522 yviF +0.6 2.9 conserved hypothetical protein (TIGR) compare
DORF13021 +0.5 0.8 no description compare
DVU1531 +0.5 2.2 methyltransferase, putative (TIGR) compare
DVU2960 ntrC +0.5 4.2 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU2695 +0.5 2.1 conserved hypothetical protein (TIGR) compare
DVU1441 flaB1 +0.5 2.1 flagellin (TIGR) compare
DVU1222 +0.5 1.5 hypothetical protein (TIGR) compare
DVU3280 +0.5 4.1 peptide ABC transporter, ATP-binding protein, authentic frameshift (TIGR) compare
DVU2566 lysA-2 +0.5 1.2 diaminopimelate decarboxylase (TIGR) compare
DVU2863 +0.5 0.7 hypothetical protein (TIGR) compare
DVU0561 +0.5 2.7 glycosyl transferase, group 1 family protein (TIGR) compare
DVU1430 +0.5 4.3 peptidase, M16 family (TIGR) compare
DVU1844 +0.5 0.4 septum formation initiator family protein (TIGR) compare
DVU2223 +0.5 1.0 hypothetical protein (TIGR) compare
DVU1704 +0.5 0.6 conserved hypothetical protein (TIGR) compare
DVU3306 +0.5 2.6 hypothetical protein (TIGR) compare
DVU2441 hspC +0.5 1.1 heat shock protein, Hsp20 family (TIGR) compare
DVU0754 +0.5 1.2 hypothetical protein (TIGR) compare
DORF702 +0.5 1.0 no description compare
DVU1061 +0.5 1.4 glycosyl transferase, group 1 family protein (TIGR) compare
DVU1068 +0.5 1.6 branched-chain amino acid ABC transporter, permease protein (TIGR) compare
DVU3329 +0.5 1.7 hypothetical protein (TIGR) compare
DVU2442 +0.5 1.4 heat shock protein, Hsp20 family (TIGR) compare
DVU3392 glnA +0.5 2.8 glutamine synthetase, type I (TIGR) compare
DVU3283 +0.5 1.4 hypothetical protein (TIGR) compare
DVU2864 +0.5 1.6 hypothetical protein (TIGR) compare
DVU1813 +0.5 1.6 hypothetical protein (TIGR) compare
DVU0295 +0.5 3.7 amine oxidase, flavin-containing (TIGR) compare
DVU1247 +0.5 1.9 hypothetical protein (TIGR) compare
DVU1971 +0.5 2.0 conserved domain protein (TIGR) compare
DVU0524 +0.5 2.1 hypothetical protein (TIGR) compare
DVU1384 pyrR +0.5 1.1 pyrimidine operon regulatory protein (TIGR) compare
DVU2211 +0.5 3.9 hypothetical protein (TIGR) compare
DVU2444 flaB3 +0.5 2.3 flagellin (TIGR) compare
DVU3287 +0.5 3.6 glycosyl transferase, group 2 family protein (TIGR) compare
DVU1393 +0.5 1.7 hypothetical protein (TIGR) compare
DVU2107 +0.4 2.1 hypothetical protein (TIGR) compare
DVU1257 +0.4 1.7 RNA-binding protein (TIGR) compare
DVU2650 +0.4 1.5 hypothetical protein (TIGR) compare
DVU1848 +0.4 2.3 conserved hypothetical protein (TIGR) compare
DVU2608 motA-3 +0.4 3.6 chemotaxis protein MotA (TIGR) compare
DVU2576 +0.4 3.5 oligopeptide ABC transporter, ATP-binding protein (TIGR) compare
DVU1183 +0.4 3.7 HD domain protein (TIGR) compare
DVU1843 +0.4 2.8 hypothetical protein (TIGR) compare
DVU1447 +0.4 2.7 CgeB family protein (TIGR) compare
DVU1629 yfiA +0.4 3.2 ribosomal subunit interface protein (TIGR) compare
DVU0661 +0.4 2.5 dihydrouridine synthase family protein (TIGR) compare
DVU1210 +0.4 0.3 conserved hypothetical protein (TIGR) compare
DVU3290 +0.4 3.2 conserved domain protein (TIGR) compare
DVU2166 +0.4 1.2 holin (TIGR) compare
DVU1685 +0.4 2.4 conserved hypothetical protein TIGR00046 (TIGR) compare
DVU1938 +0.4 0.9 hypothetical protein (TIGR) compare
DVU0409 +0.4 1.5 hypothetical protein (TIGR) compare
DVU1681 mreB-2 +0.4 3.0 rod shape-determining protein MreB (TIGR) compare
DVU1567 +0.4 1.9 hypothetical protein (TIGR) compare
DVU0941 pep* +0.4 3.0 metalloprotease, iron-related (Dmitry Rodionov) compare
DVU1426 gcvH +0.4 1.6 glycine cleavage system H protein (TIGR) compare
DVU3274 +0.4 2.2 hypothetical protein (TIGR) compare
DVU1084 pstB-1 +0.4 2.7 phosphate ABC transporter, ATP-binding protein (TIGR) compare
DVU2708 +0.4 2.2 virion morphogenesis protein (TIGR) compare
DORF15229 +0.4 2.1 no description compare
DVU0764 hup-2 +0.4 1.5 DNA-binding protein HU (TIGR) compare
DVU2517 +0.4 3.2 conserved hypothetical protein (TIGR) compare
DVU0682 +0.4 2.0 DNA-binding protein, putative (TIGR) compare
DORF12455 +0.4 0.8 SEED: helix-turn-helix protein, CopG family compare
DVU1143 +0.4 2.5 hypothetical protein (TIGR) compare
DVU1380 +0.4 1.4 hypothetical protein (TIGR) compare
DVU1851 +0.4 2.5 peptidase, M23/M37 family (TIGR) compare
DVU2165 +0.4 2.0 lysozyme, putative (TIGR) compare
DVU1708 +0.4 1.1 conserved hypothetical protein (TIGR) compare
DVU1507 +0.4 1.4 hypothetical protein (TIGR) compare
DVU0347 +0.4 2.2 transferase, hexapeptide repeat family (TIGR) compare
DVU1113 +0.4 2.0 hypothetical protein (TIGR) compare
DVU2623 +0.4 1.9 hypothetical protein (TIGR) compare
DVU1420 +0.4 0.6 Hpt domain protein (TIGR) compare
DVU2670 +0.4 2.4 hypothetical protein (TIGR) compare
DVU1238 +0.4 2.4 amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR) compare
DVU1752 +0.4 1.4 hypothetical protein (TIGR) compare
DVU1129 +0.4 1.4 conserved hypothetical protein (TIGR) compare
DVU0411 +0.4 2.8 heptosyltransferase family protein (TIGR) compare
DVU1410 +0.4 2.4 conserved domain protein (TIGR) compare
DVU1735 +0.4 1.5 hypothetical protein (TIGR) compare
DVU2117 +0.4 1.9 membrane protein, putative (TIGR) compare
DVU0880 +0.4 1.6 hypothetical protein (TIGR) compare
DVU1943 +0.4 1.1 hypothetical protein (TIGR) compare
DVU3135 mdaB +0.4 2.5 flavodoxin-like fold domain protein (TIGR) compare
DVU2021 +0.4 1.2 hypothetical protein (TIGR) compare
DVU0359 +0.4 1.2 HesB-like domain (TIGR) compare
DVU2717 +0.4 2.0 hypothetical protein (TIGR) compare
DVU2990 moeA +0.4 3.1 molybdopterin biosynthesis MoeA protein (TIGR) compare
DVU2462 +0.4 2.7 oligopeptide ABC transporter, permease protein (TIGR) compare
DVU2855 +0.4 0.8 tail/DNA circulation protein, putative (TIGR) compare
DVU2873 +0.4 0.4 hypothetical protein (TIGR) compare
DVU2859 +0.4 2.1 tail sheath protein, putative (TIGR) compare
DVU3311 +0.4 1.8 hypothetical protein (TIGR) compare
DVU3310 deaD +0.4 2.3 ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) compare
DVU2577 +0.4 1.7 DNA-binding response regulator, LuxR family (TIGR) compare
DVU0963 +0.4 1.1 GTP cyclohydrolase I family protein (TIGR) compare


Specific Phenotypes

None in this experiment

For Desulfovibrio vulgaris Hildenborough JW710 in nitrogen source experiments

For nitrogen source L-Tryptophan across organisms