Experiment set4IT039 for Bacteroides thetaiotaomicron VPI-5482
Heparin sodium salt from porcine intestinal mucosa carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + Heparin sodium salt from porcine intestinal mucosa (5 mg/ml)
Culturing: Btheta_ML6, tube, Anaerobic, at 37 (C), shaken=0 rpm
By: Hualan on 11-Oct-17
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 17 genes in this experiment
For carbon source Heparin sodium salt from porcine intestinal mucosa across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| D-Galacturonate and D-Glucuronate Utilization | 1 |
| DNA structural proteins, bacterial | 1 |
| Iron acquisition in Vibrio | 1 |
| Ton and Tol transport systems | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| 4-deoxy-L-threo-hex-4-enopyranuronate degradation | 5 | 5 | 1 |
| ergotamine biosynthesis | 12 | 4 | 1 |
| superpathway of ergotamine biosynthesis | 18 | 5 | 1 |
| tRNA charging | 21 | 21 | 1 |
| superpathway of microbial D-galacturonate and D-glucuronate degradation | 31 | 15 | 1 |