Experiment set4IT039 for Burkholderia phytofirmans PsJN

Compare to:

Defined media with casamino acids

200 most important genes:

  gene name fitness t score description  
BPHYT_RS03480 -7.4 -6.6 ferritin compare
BPHYT_RS18320 -6.7 -12.1 orotate phosphoribosyltransferase compare
BPHYT_RS13705 -6.4 -4.4 chorismate synthase compare
BPHYT_RS33880 -6.2 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS14895 -6.0 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS17890 -5.9 -3.9 shikimate kinase compare
BPHYT_RS16245 -5.8 -7.9 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS33865 -5.7 -10.3 tryptophan synthase alpha chain compare
BPHYT_RS33875 -5.5 -9.7 tryptophan synthase subunit alpha compare
BPHYT_RS16905 -5.2 -7.6 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17885 -5.1 -7.1 3-dehydroquinate synthase compare
BPHYT_RS33840 -5.1 -9.1 amidophosphoribosyltransferase compare
BPHYT_RS03640 -5.1 -4.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS14190 -4.9 -11.0 carbamoyl phosphate synthase large subunit compare
BPHYT_RS17400 -4.9 -6.2 anthranilate phosphoribosyltransferase compare
BPHYT_RS17390 -4.7 -16.0 anthranilate synthase subunit I compare
BPHYT_RS14845 -4.6 -5.3 cysteine synthase compare
BPHYT_RS02610 -4.6 -6.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS16255 -4.6 -6.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16840 -4.5 -3.1 transketolase compare
BPHYT_RS16675 -4.4 -3.0 dihydroorotase compare
BPHYT_RS17405 -4.3 -1.7 indole-3-glycerol phosphate synthase compare
BPHYT_RS06405 -4.2 -5.7 phosphoribosylamine--glycine ligase compare
BPHYT_RS03535 -4.2 -7.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS09515 -4.2 -6.3 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS16735 -4.0 -6.3 phosphogluconate dehydratase compare
BPHYT_RS17395 -4.0 -3.5 anthranilate synthase subunit II compare
BPHYT_RS33645 -4.0 -11.6 homoserine kinase compare
BPHYT_RS05010 -3.6 -6.7 RpiR family transcriptional regulator compare
BPHYT_RS06900 -3.6 -9.6 aspartate aminotransferase compare
BPHYT_RS06610 -3.3 -2.2 triosephosphate isomerase compare
BPHYT_RS12845 -3.2 -18.2 ATPase compare
BPHYT_RS15920 -3.1 -11.2 argininosuccinate synthase compare
BPHYT_RS15915 -3.0 -13.9 ornithine carbamoyltransferase compare
BPHYT_RS12985 -3.0 -4.0 amino acid acetyltransferase compare
BPHYT_RS14855 -2.9 -2.3 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS12840 -2.7 -6.0 pyruvate dehydrogenase compare
BPHYT_RS08960 -2.7 -2.4 threonine synthase compare
BPHYT_RS03725 -2.7 -2.5 serine hydroxymethyltransferase compare
BPHYT_RS06685 -2.6 -4.2 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS14915 -2.5 -7.2 phosphoserine aminotransferase compare
BPHYT_RS08955 -2.5 -6.6 homoserine dehydrogenase compare
BPHYT_RS12465 -2.5 -5.1 inositol monophosphatase compare
BPHYT_RS16270 -2.5 -5.4 phosphoglycerate kinase compare
BPHYT_RS13220 -2.4 -6.3 phosphomethylpyrimidine synthase compare
BPHYT_RS03150 -2.4 -12.2 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS15670 -2.4 -6.8 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS17520 -2.3 -8.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS02590 -2.3 -8.8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS07325 -2.3 -1.5 GntR family transcriptional regulator compare
BPHYT_RS33920 -2.3 -10.2 type II citrate synthase compare
BPHYT_RS05040 -2.3 -3.6 sugar ABC transporter ATPase compare
BPHYT_RS17855 -2.2 -13.1 glutamate synthase compare
BPHYT_RS14195 -2.2 -2.6 carbamoyl phosphate synthase small subunit compare
BPHYT_RS08565 -2.2 -2.5 dihydroorotate dehydrogenase compare
BPHYT_RS33915 -2.1 -9.7 isopropylmalate isomerase compare
BPHYT_RS17095 -2.0 -3.6 proline--tRNA ligase compare
BPHYT_RS17690 -2.0 -9.4 imidazole glycerol phosphate synthase compare
BPHYT_RS20095 -2.0 -1.8 transcriptional regulator compare
BPHYT_RS15415 -2.0 -13.5 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS17685 -1.9 -7.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS05020 -1.9 -9.6 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS06175 -1.9 -7.0 LPS biosynthesis compare
BPHYT_RS14910 -1.9 -10.6 chorismate mutase compare
BPHYT_RS32525 -1.9 -2.0 hypothetical protein compare
BPHYT_RS17530 -1.8 -6.6 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS06045 -1.8 -7.8 transaldolase compare
BPHYT_RS05225 -1.8 -8.8 phosphoenolpyruvate carboxylase compare
BPHYT_RS16975 -1.8 -6.3 shikimate 5-dehydrogenase compare
BPHYT_RS16835 -1.7 -6.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17675 -1.7 -2.8 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS23230 -1.7 -2.1 histidine kinase compare
BPHYT_RS12150 -1.7 -10.6 PII uridylyl-transferase compare
BPHYT_RS33900 -1.7 -9.4 3-isopropylmalate dehydrogenase compare
BPHYT_RS25500 -1.7 -2.1 hypothetical protein compare
BPHYT_RS30140 -1.6 -2.2 3-methylitaconate isomerase compare
BPHYT_RS11765 -1.6 -1.5 polyamine ABC transporter permease compare
BPHYT_RS23460 -1.6 -1.6 AraC family transcriptional regulator compare
BPHYT_RS16710 -1.6 -2.0 LysR family transcriptional regulator compare
BPHYT_RS06545 -1.6 -8.3 acetolactate synthase compare
BPHYT_RS04920 -1.5 -2.0 aspartate 1-decarboxylase compare
BPHYT_RS17700 -1.5 -5.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS33835 -1.5 -7.8 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS04720 -1.5 -3.7 transcriptional regulator compare
BPHYT_RS26080 -1.5 -1.6 ABC transporter ATPase compare
BPHYT_RS14755 -1.4 -4.3 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS04725 -1.4 -7.1 sulfite reductase compare
BPHYT_RS30450 -1.4 -1.3 ABC transporter permease compare
BPHYT_RS10005 -1.4 -2.1 hypothetical protein compare
BPHYT_RS09500 -1.4 -3.4 glucose-6-phosphate isomerase compare
BPHYT_RS10095 -1.4 -2.8 integrase compare
BPHYT_RS06375 -1.3 -5.2 ribonuclease compare
BPHYT_RS01595 -1.3 -7.6 homoserine O-acetyltransferase compare
BPHYT_RS28930 -1.3 -1.3 chromosome partitioning protein ParA compare
BPHYT_RS33990 -1.3 -1.2 ATPase compare
BPHYT_RS17680 -1.3 -4.7 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS18705 -1.3 -2.2 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS04730 -1.3 -5.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS03215 -1.3 -3.1 TetR family transcriptional regulator compare
BPHYT_RS33580 -1.3 -5.3 geranyltranstransferase compare
BPHYT_RS05025 -1.3 -3.5 sugar ABC transporter substrate-binding protein compare
BPHYT_RS17715 -1.3 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS05035 -1.3 -3.8 sugar ABC transporter permease compare
BPHYT_RS17670 -1.3 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS16880 -1.2 -2.2 malic enzyme compare
BPHYT_RS01455 -1.2 -0.9 peptide deformylase compare
BPHYT_RS33850 -1.2 -1.2 sporulation protein compare
BPHYT_RS05730 -1.2 -2.6 hypothetical protein compare
BPHYT_RS12530 -1.2 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS33150 -1.2 -1.2 beta-lactamase compare
BPHYT_RS17920 -1.2 -1.8 protein CyaY compare
BPHYT_RS13470 -1.2 -1.1 arylsulfate sulfotransferase compare
BPHYT_RS17240 -1.2 -1.4 cell division protein FtsW compare
BPHYT_RS09145 -1.2 -7.1 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS33870 -1.2 -3.5 DNA methylase N-4 compare
BPHYT_RS05960 -1.2 -5.4 endoribonuclease L-PSP compare
BPHYT_RS06555 -1.2 -4.5 ketol-acid reductoisomerase compare
BPHYT_RS31400 -1.1 -1.5 methyl-accepting chemotaxis protein compare
BPHYT_RS15620 -1.1 -3.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS07515 -1.1 -1.7 photosystem reaction center subunit H compare
BPHYT_RS01590 -1.1 -2.6 methionine biosynthesis protein MetW compare
BPHYT_RS00150 -1.1 -3.0 DEAD/DEAH box helicase compare
BPHYT_RS36275 -1.1 -2.0 hypothetical protein compare
BPHYT_RS25870 -1.1 -0.9 type III secretion system ATPase compare
BPHYT_RS14400 -1.1 -2.8 anti-sigma factor compare
BPHYT_RS13645 -1.1 -8.4 threonine--tRNA ligase compare
BPHYT_RS17525 -1.1 -1.4 glutaredoxin compare
BPHYT_RS09330 -1.1 -6.7 phytoene synthase compare
BPHYT_RS33175 -1.1 -2.3 hypothetical protein compare
BPHYT_RS09880 -1.1 -1.8 MFS transporter compare
BPHYT_RS19985 -1.1 -1.2 CoA-transferase compare
BPHYT_RS27390 -1.1 -2.6 hydroxyacid dehydrogenase compare
BPHYT_RS25020 -1.1 -1.8 phospholipid-binding protein compare
BPHYT_RS28910 -1.0 -1.7 diguanylate phosphodiesterase compare
BPHYT_RS04745 -1.0 -4.1 sulfate adenylyltransferase compare
BPHYT_RS30415 -1.0 -1.6 AraC family transcriptional regulator compare
BPHYT_RS33905 -1.0 -1.5 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS08950 -1.0 -4.9 aminotransferase compare
BPHYT_RS24350 -1.0 -2.1 hypothetical protein compare
BPHYT_RS18710 -1.0 -2.2 membrane protein compare
BPHYT_RS29905 -1.0 -1.8 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS35770 -1.0 -1.1 glyoxalase compare
BPHYT_RS17905 -1.0 -2.1 fimbrial assembly family protein compare
BPHYT_RS29840 -1.0 -1.5 polysaccharide biosynthesis protein compare
BPHYT_RS12990 -1.0 -2.6 iron transporter compare
BPHYT_RS04740 -1.0 -4.8 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS02540 -1.0 -1.5 hypothetical protein compare
BPHYT_RS13080 -1.0 -1.2 hypothetical protein compare
BPHYT_RS10100 -0.9 -3.2 dihydroxy-acid dehydratase compare
BPHYT_RS13605 -0.9 -1.3 tRNA-Pro compare
BPHYT_RS30750 -0.9 -1.6 GntR family transcriptional regulator compare
BPHYT_RS18255 -0.9 -2.3 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS15075 -0.9 -1.7 dihydrokaempferol 4-reductase compare
BPHYT_RS06600 -0.9 -1.8 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS16665 -0.9 -2.3 peroxiredoxin compare
BPHYT_RS02650 -0.9 -1.2 membrane protein compare
BPHYT_RS03645 -0.9 -2.5 tRNA dimethylallyltransferase compare
BPHYT_RS04965 -0.9 -4.4 ATP-binding protein compare
BPHYT_RS08130 -0.9 -1.4 transposase compare
BPHYT_RS16340 -0.9 -4.1 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS28040 -0.9 -1.8 acyl-CoA dehydrogenase compare
BPHYT_RS14550 -0.9 -1.0 tRNA-Asn compare
BPHYT_RS12725 -0.9 -6.5 regulator compare
BPHYT_RS17445 -0.9 -4.0 GTP-binding protein YchF compare
BPHYT_RS27720 -0.9 -1.0 hypothetical protein compare
BPHYT_RS07480 -0.9 -1.0 FAD-dependent oxidoreductase compare
BPHYT_RS28025 -0.9 -1.4 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS14140 -0.9 -2.5 phosphate transporter permease subunit PstC compare
BPHYT_RS00790 -0.9 -1.9 conjugal transfer protein TraF compare
BPHYT_RS23455 -0.9 -0.8 phosphorylase compare
BPHYT_RS06990 -0.8 -1.6 membrane protein compare
BPHYT_RS25845 -0.8 -0.9 RND transporter MFP subunit compare
BPHYT_RS09155 -0.8 -4.9 3-ketoacyl-ACP reductase compare
BPHYT_RS22145 -0.8 -1.5 phosphoesterase compare
BPHYT_RS18340 -0.8 -1.2 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS28860 -0.8 -1.0 haloacid dehalogenase compare
BPHYT_RS15190 -0.8 -1.5 acyl carrier protein compare
BPHYT_RS10635 -0.8 -2.1 transcriptional regulator compare
BPHYT_RS34085 -0.8 -2.0 polyamine ABC transporter permease compare
BPHYT_RS11540 -0.8 -1.7 ureidoglycolate hydrolase compare
BPHYT_RS25285 -0.8 -2.9 AraC family transcriptional regulator compare
BPHYT_RS18910 -0.8 -1.5 FlgN compare
BPHYT_RS06075 -0.8 -4.3 hypothetical protein compare
BPHYT_RS03685 -0.8 -2.9 Tol system periplasmic component YbgF compare
BPHYT_RS24930 -0.8 -3.2 cytochrome C oxidase subunit III compare
BPHYT_RS35530 -0.8 -2.5 arsenate reductase compare
BPHYT_RS19680 -0.8 -6.1 glutamate--cysteine ligase compare
BPHYT_RS02905 -0.8 -6.3 RNA polymerase subunit sigma-54 compare
BPHYT_RS03280 -0.8 -1.4 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS14920 -0.8 -2.5 hypothetical protein compare
BPHYT_RS30635 -0.8 -2.5 D-aminopeptidase compare
BPHYT_RS25220 -0.8 -2.0 ferredoxin oxidoreductase compare
BPHYT_RS35615 -0.8 -2.8 hypothetical protein compare
BPHYT_RS05030 -0.8 -1.8 sugar ABC transporter permease compare
BPHYT_RS26750 -0.8 -1.6 aldolase compare
BPHYT_RS31050 -0.8 -0.8 epimerase compare
BPHYT_RS28485 -0.8 -0.9 GntR family transcriptional regulator compare
BPHYT_RS17100 -0.8 -3.7 RNA pyrophosphohydrolase compare
BPHYT_RS27570 -0.8 -1.5 universal stress protein UspA compare
BPHYT_RS06530 -0.8 -1.2 membrane protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in nutrient experiments

For nutrient casamino acids across organisms