Experiment set4IT038 for Pseudomonas fluorescens SBW25-INTG
Growth at pH8 and carbon source D-Glucose
Group: pHMedia: soilextract_PNNL_Prosser_PlotA_B_20191220 + D-Glucose (10 mM) + Ammonium chloride (10 mM) + TAPS sodium salt (40 mM), pH=8
Culturing: PseudoSBW25_INTG_ML3, 96 deep-well microplate; 1 mL volume, Aerobic, at 30 (C)
By: Joshua Elmore on 1/6/20
Specific Phenotypes
For 3 genes in this experiment
For pH D-Glucose in Pseudomonas fluorescens SBW25-INTG
For pH D-Glucose across organisms
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| urea degradation I | 3 | 2 | 2 |
| cyanuric acid degradation II | 5 | 3 | 2 |
| cyanuric acid degradation I | 5 | 2 | 2 |
| L-citrulline degradation | 3 | 3 | 1 |
| superpathway of allantoin degradation in yeast | 6 | 4 | 2 |
| cyanate degradation | 3 | 2 | 1 |
| L-arginine degradation V (arginine deiminase pathway) | 4 | 4 | 1 |
| superpathway of atrazine degradation | 8 | 3 | 2 |
| uracil degradation III | 5 | 2 | 1 |
| allantoin degradation IV (anaerobic) | 9 | 2 | 1 |