Experiment set4IT038 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Paraquat dichloride 0.045 mg/ml

200 most important genes:

  gene name fitness t score description  
Ga0059261_1911 -4.7 -3.2 Thioredoxin-like proteins and domains compare
Ga0059261_0175 -4.3 -8.8 heme exporter protein CcmC compare
Ga0059261_0171 -4.3 -2.9 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_0790 -4.2 -4.1 putative membrane protein insertion efficiency factor compare
Ga0059261_0170 -3.9 -5.8 Uncharacterized protein involved in biosynthesis of c-type cytochromes compare
Ga0059261_1605 -3.8 -10.0 transcriptional regulator, TetR family compare
Ga0059261_0163 -3.7 -5.5 Major Facilitator Superfamily compare
Ga0059261_0172 -3.6 -9.2 Cytochrome c biogenesis factor compare
Ga0059261_4187 -3.5 -14.1 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_2005 -3.3 -6.3 protoheme IX farnesyltransferase compare
Ga0059261_4188 -3.3 -8.7 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_1369 -3.3 -14.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_2189 -3.2 -10.7 uncharacterized domain 1 compare
Ga0059261_2444 -3.0 -8.1 5-aminolevulinic acid synthase compare
Ga0059261_4186 -2.8 -3.8 Phosphopantetheine attachment site compare
Ga0059261_1368 -2.8 -4.5 hypothetical protein compare
Ga0059261_4203 -2.8 -7.0 Arabinose efflux permease compare
Ga0059261_3341 -2.7 -8.9 ATP-dependent protease HslVU, peptidase subunit compare
Ga0059261_2286 -2.6 -8.2 Fe2+ transport system protein B compare
Ga0059261_2008 -2.5 -18.3 cytochrome c oxidase, subunit I compare
Ga0059261_0613 -2.5 -5.2 FecR family protein compare
Ga0059261_1370 -2.5 -10.2 Signal transduction histidine kinase compare
Ga0059261_2490 -2.4 -7.6 Small protein A (tmRNA-binding) compare
Ga0059261_3339 -2.4 -9.5 ATP-dependent protease HslVU, ATPase subunit compare
Ga0059261_2285 -2.4 -2.8 Fe2+ transport system protein A compare
Ga0059261_0349 -2.4 -5.8 MarR family compare
Ga0059261_3276 -2.2 -10.0 ABC-type multidrug transport system, ATPase and permease components compare
Ga0059261_2002 -2.0 -8.4 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Ga0059261_1564 -2.0 -5.6 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
Ga0059261_1869 -2.0 -7.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_1560 -1.9 -4.0 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Ga0059261_1287 -1.9 -10.5 poly(R)-hydroxyalkanoic acid synthase, class I compare
Ga0059261_0197 -1.8 -2.4 hypothetical protein compare
Ga0059261_1871 -1.7 -10.4 ABC transport permease subunit compare
Ga0059261_3191 -1.7 -7.7 Glycosyltransferases involved in cell wall biogenesis compare
Ga0059261_2314 -1.7 -5.2 Protein-disulfide isomerase compare
Ga0059261_2013 -1.7 -11.9 signal peptidase I, bacterial type compare
Ga0059261_0131 -1.7 -6.8 hypothetical protein compare
Ga0059261_1565 -1.6 -10.6 cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-) compare
Ga0059261_1870 -1.5 -7.1 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Ga0059261_2417 -1.5 -4.0 phytoene desaturase compare
Ga0059261_1563 -1.4 -3.3 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
Ga0059261_4055 -1.4 -9.1 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) compare
Ga0059261_2190 -1.4 -3.1 PTS IIA-like nitrogen-regulatory protein PtsN compare
Ga0059261_1417 -1.4 -4.0 transcriptional regulator, XRE family compare
Ga0059261_3221 -1.4 -10.0 Cytochrome c1 compare
Ga0059261_1312 -1.3 -4.8 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Ga0059261_1451 -1.3 -4.3 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) compare
Ga0059261_0174 -1.3 -1.4 hypothetical protein compare
Ga0059261_2471 -1.3 -2.1 hypothetical protein compare
Ga0059261_3220 -1.3 -10.0 Cytochrome b subunit of the bc complex compare
Ga0059261_1868 -1.3 -3.3 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_2191 -1.3 -6.1 ribosomal subunit interface protein compare
Ga0059261_3340 -1.3 -5.8 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) compare
Ga0059261_1696 -1.3 -4.5 Pyridine nucleotide-disulphide oxidoreductase/Reductase C-terminal compare
Ga0059261_1544 -1.3 -5.6 transcriptional regulator, TetR family compare
Ga0059261_2391 -1.3 -2.4 Helix-turn-helix domain compare
Ga0059261_2021 -1.2 -9.2 Protein of unknown function (DUF2029) compare
Ga0059261_2268 -1.2 -7.3 Cytochrome c2 compare
Ga0059261_1928 -1.2 -3.9 Predicted permeases compare
Ga0059261_3637 -1.2 -2.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_4056 -1.2 -8.3 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Ga0059261_1562 -1.2 -5.0 Uncharacterized conserved protein compare
Ga0059261_2009 -1.2 -8.6 cytochrome c oxidase, subunit II compare
Ga0059261_1547 -1.2 -7.3 Uncharacterized protein required for cytochrome oxidase assembly compare
Ga0059261_2179 -1.2 -7.9 Phospholipid N-methyltransferase compare
Ga0059261_0321 -1.2 -2.4 hypothetical protein compare
Ga0059261_1545 -1.2 -4.9 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_4025 -1.1 -2.1 Nucleotidyl transferase compare
Ga0059261_2540 -1.1 -2.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_0255 -1.1 -2.9 SurA N-terminal domain/PPIC-type PPIASE domain compare
Ga0059261_3748 -1.1 -2.4 ribosomal protein L15, bacterial/organelle compare
Ga0059261_2514 -1.1 -8.1 phosphoenolpyruvate-protein phosphotransferase compare
Ga0059261_3481 -1.1 -5.7 Beta-glucosidase-related glycosidases compare
Ga0059261_1008 -1.1 -3.9 Geranylgeranyl pyrophosphate synthase compare
Ga0059261_3671 -1.1 -1.4 Citrate lyase beta subunit compare
Ga0059261_2680 -1.1 -1.7 hypothetical protein compare
Ga0059261_2048 -1.1 -5.8 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_1561 -1.0 -4.5 Signal transduction histidine kinase compare
Ga0059261_1768 -1.0 -2.6 Sigma-70 region 2 compare
Ga0059261_2181 -1.0 -7.5 penicillin-binding protein, 1A family compare
Ga0059261_1872 -1.0 -4.1 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
Ga0059261_0169 -1.0 -4.6 hypothetical protein compare
Ga0059261_1382 -1.0 -5.8 periplasmic serine protease, Do/DeqQ family compare
Ga0059261_1507 -1.0 -2.9 deoxycytidine triphosphate deaminase compare
Ga0059261_0875 -1.0 -1.4 Leucyl aminopeptidase compare
Ga0059261_3490 -1.0 -5.8 Response regulator receiver domain/Sigma-70, region 4 compare
Ga0059261_1929 -1.0 -3.5 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_0038 -1.0 -3.5 Transcriptional regulators compare
Ga0059261_1293 -0.9 -6.4 (p)ppGpp synthetase, RelA/SpoT family compare
Ga0059261_1846 -0.9 -6.0 Xaa-Pro aminopeptidase compare
Ga0059261_0089 -0.9 -4.3 trigger factor compare
Ga0059261_1567 -0.9 -7.0 Arabinose efflux permease compare
Ga0059261_0952 -0.9 -7.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_0685 -0.9 -2.1 pyruvate kinase compare
Ga0059261_0650 -0.9 -1.9 Negative regulator of beta-lactamase expression compare
Ga0059261_3488 -0.9 -1.3 Histidine kinase/HAMP domain compare
Ga0059261_3101 -0.9 -2.9 nucleotide sugar dehydrogenase compare
Ga0059261_2534 -0.9 -3.7 3-hydroxyacyl-CoA dehydrogenase compare
Ga0059261_0136 -0.8 -2.9 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation compare
Ga0059261_0622 -0.8 -4.3 ABC-type Fe3+-hydroxamate transport system, periplasmic component compare
Ga0059261_3498 -0.8 -3.1 Iron-sulfur cluster assembly accessory protein compare
Ga0059261_3119 -0.8 -3.1 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_4024 -0.8 -3.4 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Ga0059261_3657 -0.8 -4.8 His Kinase A (phospho-acceptor) domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
Ga0059261_0990 -0.8 -7.0 methionine synthase (B12-dependent) (EC 2.1.1.13) compare
Ga0059261_0623 -0.8 -2.7 ABC-type Fe3+-siderophore transport system, permease component compare
Ga0059261_4054 -0.8 -2.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_1360 -0.8 -5.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Ga0059261_3595 -0.8 -3.6 Site-specific recombinase XerD compare
Ga0059261_3211 -0.8 -5.1 hypothetical protein compare
Ga0059261_2119 -0.8 -2.8 Flagellar motor protein compare
Ga0059261_1119 -0.8 -2.1 Chemotaxis signal transduction protein compare
Ga0059261_0620 -0.8 -6.6 Outer membrane cobalamin receptor protein compare
Ga0059261_4217 -0.8 -1.5 hypothetical protein compare
Ga0059261_2987 -0.8 -1.7 hypothetical protein compare
Ga0059261_0037 -0.7 -5.2 hypothetical protein compare
Ga0059261_3190 -0.7 -5.7 3-isopropylmalate dehydrogenase compare
Ga0059261_4052 -0.7 -6.1 Acyl-CoA dehydrogenases compare
Ga0059261_0159 -0.7 -4.4 Transcriptional regulator compare
Ga0059261_3759 -0.7 -1.4 hypothetical protein compare
Ga0059261_0242 -0.7 -1.1 hypothetical protein compare
Ga0059261_4053 -0.7 -2.5 hypothetical protein compare
Ga0059261_3579 -0.7 -2.9 hypothetical protein compare
Ga0059261_0991 -0.7 -4.2 Methionine synthase I (cobalamin-dependent), methyltransferase domain compare
Ga0059261_3685 -0.7 -4.3 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_3938 -0.7 -4.8 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_0146 -0.7 -2.0 amidohydrolase, PncC family compare
Ga0059261_3159 -0.7 -2.8 TolR protein compare
Ga0059261_4012 -0.7 -1.6 AMP nucleosidase compare
Ga0059261_3502 -0.7 -2.0 Fatty acid desaturase compare
Ga0059261_2196 -0.7 -5.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_2529 -0.7 -3.1 Predicted integral membrane protein compare
Ga0059261_3506 -0.7 -1.5 Predicted permeases compare
Ga0059261_0726 -0.6 -1.3 hypothetical protein compare
Ga0059261_2000 -0.6 -3.8 Uncharacterized conserved protein compare
Ga0059261_3695 -0.6 -4.5 Predicted metal-dependent hydrolase with the TIM-barrel fold compare
Ga0059261_1014 -0.6 -3.5 cation diffusion facilitator family transporter compare
Ga0059261_1257 -0.6 -4.5 Uncharacterized iron-regulated protein compare
Ga0059261_1985 -0.6 -1.6 transcriptional regulator NrdR compare
Ga0059261_2121 -0.6 -4.3 hypothetical protein compare
Ga0059261_3520 -0.6 -4.7 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Ga0059261_2707 -0.6 -4.1 fructose-1,6-bisphosphatase, class II compare
Ga0059261_2501 -0.6 -4.0 C-terminal peptidase (prc) compare
Ga0059261_2368 -0.6 -1.9 Phage baseplate assembly protein W compare
Ga0059261_3157 -0.6 -4.8 tol-pal system beta propeller repeat protein TolB compare
Ga0059261_2764 -0.6 -2.7 Site-specific recombinase XerD compare
Ga0059261_0811 -0.6 -2.2 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_2120 -0.6 -1.9 hypothetical protein compare
Ga0059261_0852 -0.6 -3.0 Transcriptional regulators compare
Ga0059261_0692 -0.6 -3.4 Predicted secreted protein compare
Ga0059261_3284 -0.5 -4.3 acetyl-CoA acetyltransferases compare
Ga0059261_2050 -0.5 -2.1 hypothetical protein compare
Ga0059261_0239 -0.5 -0.8 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
Ga0059261_2003 -0.5 -3.5 Cytochrome oxidase assembly factor compare
Ga0059261_0265 -0.5 -4.7 3-oxoacid CoA-transferase, A subunit compare
Ga0059261_1756 -0.5 -1.1 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes compare
Ga0059261_0354 -0.5 -1.3 6-phosphogluconate dehydratase (EC 4.2.1.12) compare
Ga0059261_3786 -0.5 -2.9 Malic enzyme compare
Ga0059261_3064 -0.5 -2.0 hypothetical protein compare
Ga0059261_3440 -0.5 -1.2 hypothetical protein compare
Ga0059261_0624 -0.5 -3.2 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components compare
Ga0059261_2700 -0.5 -4.0 Putative Zn-dependent protease, contains TPR repeats compare
Ga0059261_4228 -0.5 -1.8 hypothetical protein compare
Ga0059261_0993 -0.5 -1.2 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Ga0059261_4046 -0.5 -1.7 Response regulator receiver domain compare
Ga0059261_3156 -0.5 -2.0 peptidoglycan-associated lipoprotein compare
Ga0059261_3038 -0.5 -2.7 hypothetical protein compare
Ga0059261_1707 -0.5 -2.0 hypothetical protein compare
Ga0059261_3215 -0.5 -3.3 hypothetical protein compare
Ga0059261_1638 -0.5 -3.4 transcriptional regulator, GntR family compare
Ga0059261_2612 -0.5 -1.6 Uncharacterized secreted protein compare
Ga0059261_2538 -0.5 -4.0 Membrane protein TerC, possibly involved in tellurium resistance compare
Ga0059261_3160 -0.5 -1.8 TolQ protein compare
Ga0059261_3939 -0.5 -2.6 transcriptional regulator, TetR family compare
Ga0059261_3599 -0.5 -2.7 ADP-ribose pyrophosphatase compare
Ga0059261_0857 -0.5 -3.3 Phospholipid N-methyltransferase compare
Ga0059261_1419 -0.5 -2.0 fructose-6-phosphate aldolase, TalC/MipB family compare
Ga0059261_4008 -0.5 -3.2 Alpha/beta hydrolase family compare
Ga0059261_0263 -0.5 -2.4 3-oxoacid CoA-transferase, B subunit compare
Ga0059261_1335 -0.5 -1.6 Predicted ATPase compare
Ga0059261_1337 -0.4 -2.3 Predicted enzyme related to lactoylglutathione lyase compare
Ga0059261_1404 -0.4 -3.0 transcriptional regulator, BadM/Rrf2 family compare
Ga0059261_1915 -0.4 -2.2 transcriptional regulator, MucR family compare
Ga0059261_1743 -0.4 -1.7 hypothetical protein compare
Ga0059261_0719 -0.4 -2.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_2118 -0.4 -2.4 flagellar motor stator protein MotA compare
Ga0059261_1098 -0.4 -2.9 Helix-turn-helix compare
Ga0059261_2293 -0.4 -2.5 cell division ATP-binding protein FtsE compare
Ga0059261_0060 -0.4 -1.7 Uncharacterized conserved protein compare
Ga0059261_2373 -0.4 -1.8 hypothetical protein compare
Ga0059261_0248 -0.4 -1.6 hypothetical protein compare
Ga0059261_4124 -0.4 -2.5 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Ga0059261_3374 -0.4 -2.2 NAD-dependent aldehyde dehydrogenases compare
Ga0059261_1075 -0.4 -0.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_3615 -0.4 -0.8 hypothetical protein compare
Ga0059261_1600 -0.4 -0.8 Domain of unknown function (DUF4167) compare
Ga0059261_3945 -0.4 -2.7 type II secretion system protein D compare
Ga0059261_0059 -0.4 -1.2 Stress-induced morphogen (activity unknown) compare
Ga0059261_0439 -0.4 -1.3 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Paraquat dichloride in Sphingomonas koreensis DSMZ 15582

For stress Paraquat dichloride across organisms