Experiment set4IT038 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Paraquat dichloride 0.045 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_4204 +2.3 13.1 transcriptional regulator, TetR family compare
Ga0059261_0664 +1.2 3.5 pseudouridine synthase, RluA family compare
Ga0059261_1381 +1.1 5.3 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_0344 +1.1 3.8 Molecular chaperone (small heat shock protein) compare
Ga0059261_1380 +1.1 9.0 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_3569 +0.8 2.0 chaperone protein DnaJ compare
Ga0059261_1601 +0.8 3.0 protein-(glutamine-N5) methyltransferase, release factor-specific compare
Ga0059261_3280 +0.7 2.2 Uncharacterized conserved protein compare
Ga0059261_0817 +0.7 4.4 GTP-binding protein TypA/BipA compare
Ga0059261_0013 +0.7 2.9 hypothetical protein compare
Ga0059261_0245 +0.7 1.8 pseudouridine synthase compare
Ga0059261_0964 +0.7 2.9 Superfamily II DNA and RNA helicases compare
Ga0059261_2086 +0.7 1.7 SAF-like compare
Ga0059261_0012 +0.7 4.6 Protein of unknown function (DUF1469) compare
Ga0059261_2145 +0.7 4.0 ribosome-binding factor A compare
Ga0059261_2730 +0.7 1.9 Sortase and related acyltransferases compare
Ga0059261_1303 +0.7 4.4 hypothetical protein compare
Ga0059261_1115 +0.6 1.8 Chemotaxis protein; stimulates methylation of MCP proteins compare
Ga0059261_1860 +0.6 0.9 Transposase compare
Ga0059261_1762 +0.6 1.1 hypothetical protein compare
Ga0059261_0889 +0.6 1.2 Cold shock proteins compare
Ga0059261_3884 +0.6 3.3 K+-transporting ATPase, B subunit compare
Ga0059261_2244 +0.6 4.7 DNA polymerase I (EC 2.7.7.7) compare
Ga0059261_1939 +0.5 1.4 putative phosphoesterase compare
Ga0059261_1791 +0.5 1.3 hypothetical protein compare
Ga0059261_0980 +0.5 3.4 polyhydroxyalkanoate synthesis repressor PhaR compare
Ga0059261_2243 +0.5 1.4 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_2436 +0.5 2.0 hypothetical protein compare
Ga0059261_3605 +0.5 2.0 tRNA compare
Ga0059261_0433 +0.5 2.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_4120 +0.4 1.0 Stress responsive A/B Barrel Domain compare
Ga0059261_2663 +0.4 1.1 Domain of unknown function (DUF718) compare
Ga0059261_1652 +0.4 1.0 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
Ga0059261_3800 +0.4 2.0 Cold shock proteins compare
Ga0059261_3871 +0.4 1.2 formate dehydrogenase family accessory protein FdhD compare
Ga0059261_0720 +0.4 1.5 Predicted small integral membrane protein compare
Ga0059261_2309 +0.4 2.1 transcriptional regulator, LacI family compare
Ga0059261_3027 +0.4 1.8 Predicted transcriptional regulators compare
Ga0059261_3491 +0.4 2.5 hypothetical protein compare
Ga0059261_3801 +0.4 2.1 Phosphate/sulphate permeases compare
Ga0059261_3969 +0.4 1.4 Serine hydrolase compare
Ga0059261_0609 +0.4 2.1 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_3161 +0.4 2.7 tol-pal system-associated acyl-CoA thioesterase compare
Ga0059261_3347 +0.4 1.9 Domain of unknown function DUF87 compare
Ga0059261_0306 +0.4 2.3 FOG: HPt domain compare
Ga0059261_4192 +0.4 1.7 ATPases involved in chromosome partitioning compare
Ga0059261_3006 +0.4 1.1 hypothetical protein compare
Ga0059261_0350 +0.4 2.2 Bacterial SH3 domain compare
Ga0059261_2742 +0.4 1.2 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family compare
Ga0059261_1837 +0.4 1.2 Staphylococcal nuclease homologue compare
Ga0059261_2462 +0.3 1.3 Predicted transcriptional regulators compare
Ga0059261_4078 +0.3 2.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Ga0059261_3367 +0.3 1.6 hypothetical protein compare
Ga0059261_4212 +0.3 2.3 TPR repeat compare
Ga0059261_3496 +0.3 1.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_2929 +0.3 0.9 oxygen-dependent methionine synthase, methyltransferase component MesD (from data) compare
Ga0059261_3815 +0.3 1.8 hypothetical protein compare
Ga0059261_3274 +0.3 2.0 Glyoxalase-like domain compare
Ga0059261_0220 +0.3 2.4 L-serine dehydratase, iron-sulfur-dependent, single chain form compare
Ga0059261_0781 +0.3 0.9 hypothetical protein compare
Ga0059261_2531 +0.3 1.5 conserved hypothetical integral membrane protein compare
Ga0059261_3407 +0.3 2.5 Superfamily II DNA and RNA helicases compare
Ga0059261_2491 +0.3 2.0 Uncharacterized conserved protein compare
Ga0059261_2897 +0.3 1.3 hypothetical protein compare
Ga0059261_1546 +0.3 2.3 MerC mercury resistance protein compare
Ga0059261_1259 +0.3 1.6 Ribbon-helix-helix domain compare
Ga0059261_1596 +0.3 1.3 CBS domain compare
Ga0059261_2466 +0.3 2.5 DnaJ domain/DnaJ C terminal domain compare
Ga0059261_0898 +0.3 0.8 Membrane protein implicated in regulation of membrane protease activity compare
Ga0059261_0647 +0.3 1.6 tRNA pseudouridine(38-40) synthase compare
Ga0059261_3948 +0.3 1.2 type II secretion system protein H compare
Ga0059261_1914 +0.3 1.3 Acetyltransferases compare
Ga0059261_3598 +0.3 1.4 Flp pilus assembly protein, pilin Flp compare
Ga0059261_0403 +0.3 1.5 Micrococcal nuclease (thermonuclease) homologs compare
Ga0059261_0244 +0.3 1.6 FOG: CheY-like receiver compare
Ga0059261_0102 +0.3 2.1 endopeptidase La compare
Ga0059261_3442 +0.3 1.4 HTH domain compare
Ga0059261_2892 +0.3 1.3 hypothetical protein compare
Ga0059261_3838 +0.3 1.2 Hemerythrin HHE cation binding domain compare
Ga0059261_3793 +0.3 1.9 Acyl-CoA dehydrogenases compare
Ga0059261_3675 +0.3 1.4 Methyl-accepting chemotaxis protein compare
Ga0059261_3518 +0.3 2.4 RND family efflux transporter, MFP subunit compare
Ga0059261_3083 +0.3 1.4 hypothetical protein compare
Ga0059261_0850 +0.3 0.5 hypothetical protein compare
Ga0059261_3305 +0.3 1.7 Uncharacterized conserved protein compare
Ga0059261_1499 +0.3 1.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Ga0059261_2154 +0.3 1.0 uncharacterized domain 1 compare
Ga0059261_1811 +0.3 1.0 ATP:cob(I)alamin adenosyltransferase compare
Ga0059261_1758 +0.3 1.7 hypothetical protein compare
Ga0059261_3552 +0.3 1.6 hypothetical protein compare
Ga0059261_2044 +0.3 2.0 peptide chain release factor 3 compare
Ga0059261_3703 +0.3 1.5 Uncharacterized conserved protein compare
Ga0059261_2101 +0.3 1.3 Putative transposase of IS4/5 family (DUF4096) compare
Ga0059261_1407 +0.3 2.2 23S rRNA (adenine(2503)-C(2))-methyltransferase compare
Ga0059261_3650 +0.3 1.2 hypothetical protein compare
Ga0059261_1035 +0.3 0.8 hypothetical protein compare
Ga0059261_0633 +0.3 0.8 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Ga0059261_1286 +0.3 1.6 phasin family protein compare
Ga0059261_3609 +0.3 1.3 Protein of unknown function (DUF2945) compare
Ga0059261_0848 +0.3 2.0 transcriptional regulator, TetR family compare
Ga0059261_3483 +0.3 1.5 segregation and condensation protein B compare
Ga0059261_3783 +0.3 1.5 hypothetical protein compare
Ga0059261_2685 +0.3 1.8 Putative translation initiation inhibitor, yjgF family compare
Ga0059261_0586 +0.3 1.4 hypothetical protein compare
Ga0059261_1064 +0.3 1.2 Uncharacterized conserved protein compare
Ga0059261_0305 +0.3 1.2 bacterioferritin compare
Ga0059261_3394 +0.3 1.8 hypothetical protein compare
Ga0059261_1730 +0.2 1.1 Surface presentation of antigens (SPOA) compare
Ga0059261_3702 +0.2 1.5 NAD(P)H:quinone oxidoreductase, type IV compare
Ga0059261_0572 +0.2 1.7 Transcriptional regulator compare
Ga0059261_0389 +0.2 1.6 P-type conjugative transfer ATPase TrbB compare
Ga0059261_3701 +0.2 2.0 Pirin-related protein compare
Ga0059261_3784 +0.2 2.1 DNA mismatch repair protein MutS compare
Ga0059261_0413 +0.2 1.9 N-acyl-L-homoserine lactone synthetase compare
Ga0059261_1424 +0.2 1.8 Acetyltransferases compare
Ga0059261_2091 +0.2 1.4 Flagellar hook capping protein compare
Ga0059261_3886 +0.2 1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_3803 +0.2 1.5 RND family efflux transporter, MFP subunit compare
Ga0059261_2981 +0.2 2.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_1574 +0.2 0.9 Superfamily II DNA and RNA helicases compare
Ga0059261_2090 +0.2 1.5 flagellar basal-body rod protein FlgC compare
Ga0059261_2992 +0.2 1.2 Biopolymer transport protein compare
Ga0059261_1620 +0.2 1.8 Predicted S-adenosylmethionine-dependent methyltransferase compare
Ga0059261_1912 +0.2 1.0 Nitroreductase compare
Ga0059261_1855 +0.2 2.1 Outer membrane cobalamin receptor protein compare
Ga0059261_3277 +0.2 1.7 polyhydroxyalkanoate depolymerase, intracellular compare
Ga0059261_2966 +0.2 1.3 2-deoxy-D-gluconate 3-dehydrogenase compare
Ga0059261_3975 +0.2 1.3 Predicted ATPase/kinase involved in NAD metabolism compare
Ga0059261_2909 +0.2 1.8 Transcriptional regulators compare
Ga0059261_4006 +0.2 1.5 Multidrug resistance efflux pump compare
Ga0059261_0549 +0.2 1.6 Domain of Unknown Function (DUF1080) compare
Ga0059261_3604 +0.2 0.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_0143 +0.2 1.4 hypothetical protein compare
Ga0059261_2871 +0.2 1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_0140 +0.2 1.5 tRNA-U20-dihydrouridine synthase compare
Ga0059261_2346 +0.2 1.8 Phosphoadenosine phosphosulfate reductase family compare
Ga0059261_1728 +0.2 1.4 Flagellar biosynthesis protein, FliO compare
Ga0059261_1573 +0.2 1.3 hypothetical protein compare
Ga0059261_0472 +0.2 0.9 Predicted metal-binding protein compare
Ga0059261_0493 +0.2 0.5 hypothetical protein compare
Ga0059261_0294 +0.2 1.0 arsenate reductase (glutaredoxin) compare
Ga0059261_2065 +0.2 1.2 Flagellar motor switch protein compare
Ga0059261_0675 +0.2 1.1 hypothetical protein compare
Ga0059261_1942 +0.2 1.3 putative efflux pump, required for thallium (I) resistance (from data) compare
Ga0059261_2478 +0.2 0.9 Uncharacterized conserved protein compare
Ga0059261_3603 +0.2 1.5 Predicted amidohydrolase compare
Ga0059261_3645 +0.2 1.8 Transmembrane secretion effector compare
Ga0059261_0975 +0.2 1.4 Flp pilus assembly protein, ATPase CpaF compare
Ga0059261_1082 +0.2 1.4 Chemotaxis signal transduction protein compare
Ga0059261_0065 +0.2 1.3 ABC-type dipeptide transport system, periplasmic component compare
Ga0059261_4002 +0.2 1.5 Esterase/lipase compare
Ga0059261_3646 +0.2 0.6 Uncharacterized stress protein (general stress protein 26) compare
Ga0059261_1924 +0.2 1.9 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes compare
Ga0059261_3216 +0.2 0.9 Acetyltransferases compare
Ga0059261_0286 +0.2 1.5 Helix-turn-helix domain compare
Ga0059261_4189 +0.2 1.2 hypothetical protein compare
Ga0059261_1899 +0.2 1.6 Lysophospholipase L1 and related esterases compare
Ga0059261_1339 +0.2 0.5 hypothetical protein compare
Ga0059261_1975 +0.2 1.4 hypothetical protein compare
Ga0059261_2128 +0.2 1.0 Predicted membrane protein compare
Ga0059261_3269 +0.2 1.1 HPP family compare
Ga0059261_1970 +0.2 1.3 Bacterial aa3 type cytochrome c oxidase subunit IV compare
Ga0059261_0536 +0.2 1.2 transcriptional regulator, TetR family compare
Ga0059261_1612 +0.2 0.3 hypothetical protein compare
Ga0059261_1478 +0.2 0.8 Predicted dioxygenase of extradiol dioxygenase family compare
Ga0059261_4202 +0.2 1.5 Putative bacterial sensory transduction regulator compare
Ga0059261_2078 +0.2 1.2 transcriptional regulator, ArsR family compare
Ga0059261_0203 +0.2 0.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Ga0059261_2232 +0.2 1.0 Uncharacterized conserved protein compare
Ga0059261_1145 +0.2 0.6 flagella basal body P-ring formation protein FlgA compare
Ga0059261_2396 +0.2 1.0 hypothetical protein compare
Ga0059261_3395 +0.2 0.9 hypothetical protein compare
Ga0059261_3720 +0.2 0.9 Integral membrane protein CcmA involved in cell shape determination compare
Ga0059261_0464 +0.2 0.5 hypothetical protein compare
Ga0059261_0209 +0.2 1.7 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
Ga0059261_1032 +0.2 1.0 protein CrcB compare
Ga0059261_3795 +0.2 1.2 hypothetical protein compare
Ga0059261_1625 +0.2 1.4 2-keto-3-deoxy-6-phosphogluconate aldolase compare
Ga0059261_3634 +0.2 1.0 Predicted membrane protein compare
Ga0059261_3056 +0.2 0.6 Protein of unknown function (DUF2958) compare
Ga0059261_1120 +0.2 1.0 Chemotaxis protein histidine kinase and related kinases compare
Ga0059261_3015 +0.2 1.2 hypothetical protein compare
Ga0059261_1525 +0.2 1.2 Domain of unknown function (DUF4349) compare
Ga0059261_2171 +0.2 1.3 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Ga0059261_2668 +0.2 1.5 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_1795 +0.2 0.8 Predicted nucleoside-diphosphate-sugar epimerases compare
Ga0059261_1078 +0.2 0.6 Response regulator receiver domain compare
Ga0059261_1104 +0.2 1.3 flagellar biosynthetic protein FliR compare
Ga0059261_3451 +0.2 0.5 hypothetical protein compare
Ga0059261_0833 +0.2 1.2 Glycerol kinase compare
Ga0059261_1535 +0.2 1.4 Predicted transcriptional regulators compare
Ga0059261_3694 +0.2 1.5 threonine deaminase (EC 4.3.1.19) (from data) compare
Ga0059261_1253 +0.2 0.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_3696 +0.2 0.9 hypothetical protein compare
Ga0059261_0270 +0.2 1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_1854 +0.2 1.4 Na+/H+-dicarboxylate symporters compare
Ga0059261_0207 +0.2 1.1 Predicted phosphoribosyltransferases compare
Ga0059261_0920 +0.2 1.0 rRNA methylases compare
Ga0059261_3911 +0.2 1.1 hypothetical protein compare
Ga0059261_4060 +0.2 0.7 Predicted membrane protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Paraquat dichloride in Sphingomonas koreensis DSMZ 15582

For stress Paraquat dichloride across organisms