Experiment set4IT038 for Burkholderia phytofirmans PsJN

Compare to:

Defined media with L-Serine

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS10400 +1.4 2.0 taurine ABC transporter permease compare
BPHYT_RS23445 +1.4 2.6 hexuronate transporter compare
BPHYT_RS24010 +1.2 2.5 L-histidine ABC transporter, permease component 2 (from data) compare
BPHYT_RS18860 +1.2 5.7 flagellar P-ring protein FlgI compare
BPHYT_RS30425 +1.2 2.2 LysR family transcriptional regulator compare
BPHYT_RS00770 +1.2 1.6 conjugal transfer protein TraC compare
BPHYT_RS18865 +1.1 2.0 flagellar L-ring protein FlgH compare
BPHYT_RS24925 +1.1 1.6 cytochrome O ubiquinol oxidase compare
BPHYT_RS30490 +1.1 1.1 2-haloalkanoic acid dehalogenase compare
BPHYT_RS11810 +1.1 1.4 LysR family transcriptional regulator compare
BPHYT_RS18880 +1.1 8.2 flagellar hook protein FlgE compare
BPHYT_RS01795 +1.0 6.3 histidine kinase compare
BPHYT_RS18795 +1.0 8.8 flagellar export protein FliJ compare
BPHYT_RS18890 +1.0 5.6 flagellar basal body rod protein FlgC compare
BPHYT_RS18945 +1.0 6.5 flagellar biosynthesis protein FlhB compare
BPHYT_RS18810 +1.0 7.1 flagellar motor switch protein FliM compare
BPHYT_RS14250 +1.0 5.7 glycosyl transferase compare
BPHYT_RS30465 +1.0 1.3 short-chain dehydrogenase compare
BPHYT_RS02725 +1.0 3.0 GntR family transcriptional regulator compare
BPHYT_RS18925 +1.0 7.9 RNA polymerase sigma70 compare
BPHYT_RS25980 +1.0 1.2 urea carboxylase compare
BPHYT_RS31960 +1.0 2.9 hypothetical protein compare
BPHYT_RS09735 +1.0 2.2 glycosyl transferase compare
BPHYT_RS35750 +1.0 1.6 hypothetical protein compare
BPHYT_RS01790 +0.9 6.7 LuxR family transcriptional regulator compare
BPHYT_RS29620 +0.9 1.0 hypothetical protein compare
BPHYT_RS23830 +0.9 1.6 acetyl-CoA hydrolase compare
BPHYT_RS18900 +0.9 7.8 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS18885 +0.9 4.6 flagellar basal body rod modification protein FlgD compare
BPHYT_RS21495 +0.9 1.1 ABC transporter compare
BPHYT_RS18825 +0.9 4.8 flagellar biosynthesis protein FliP compare
BPHYT_RS03455 +0.9 1.5 paraquat-inducible protein A compare
BPHYT_RS09585 +0.9 1.3 hypothetical protein compare
BPHYT_RS18870 +0.9 6.3 flagellar basal body rod protein FlgG compare
BPHYT_RS18855 +0.9 4.3 flagellar rod assembly protein FlgJ compare
BPHYT_RS27395 +0.9 1.6 N-acetyltransferase GCN5 compare
BPHYT_RS18780 +0.9 3.7 flagellar motor switch protein FliG compare
BPHYT_RS18935 +0.9 4.4 flagellar biosynthesis regulator FlhF compare
BPHYT_RS14255 +0.9 7.6 ABC transporter compare
BPHYT_RS18775 +0.9 7.1 flagellar M-ring protein FliF compare
BPHYT_RS33515 +0.9 3.2 porin compare
BPHYT_RS31020 +0.9 1.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS06195 +0.8 1.6 membrane protein compare
BPHYT_RS18940 +0.8 5.9 flagellar biosynthesis protein FlhA compare
BPHYT_RS18830 +0.8 5.6 flagellar biosynthesis protein FliQ compare
BPHYT_RS18785 +0.8 2.0 flagellar assembly protein FliH compare
BPHYT_RS28480 +0.8 2.1 hydroxyglutarate oxidase compare
BPHYT_RS05515 +0.8 2.7 hypothetical protein compare
BPHYT_RS21700 +0.8 2.0 phosphotransacetylase compare
BPHYT_RS18800 +0.8 3.6 flagellar hook-length control protein compare
BPHYT_RS12900 +0.8 1.4 transposase compare
BPHYT_RS10875 +0.8 2.1 transporter compare
BPHYT_RS26820 +0.8 1.6 LysR family transcriptional regulator compare
BPHYT_RS34505 +0.8 2.6 hypothetical protein compare
BPHYT_RS19025 +0.8 4.2 transcriptional regulator compare
BPHYT_RS26510 +0.8 1.1 transcriptional regulator compare
BPHYT_RS25845 +0.8 1.1 RND transporter MFP subunit compare
BPHYT_RS04885 +0.8 2.5 threonine-phosphate decarboxylase compare
BPHYT_RS18790 +0.8 5.8 ATP synthase compare
BPHYT_RS22500 +0.8 3.1 transcriptional regulator compare
BPHYT_RS04285 +0.8 1.6 rhamnosyltransferase compare
BPHYT_RS22820 +0.8 1.8 hydrolase compare
BPHYT_RS25870 +0.8 1.0 type III secretion system ATPase compare
BPHYT_RS14670 +0.8 1.3 hypothetical protein compare
BPHYT_RS10645 +0.8 0.9 cyanate hydratase compare
BPHYT_RS24055 +0.7 2.6 oxidoreductase compare
BPHYT_RS29840 +0.7 1.7 polysaccharide biosynthesis protein compare
BPHYT_RS18875 +0.7 4.0 flagellar basal body rod protein FlgF compare
BPHYT_RS28885 +0.7 1.3 betaine-aldehyde dehydrogenase compare
BPHYT_RS35255 +0.7 2.4 AraC family transcriptional regulator compare
BPHYT_RS12535 +0.7 1.0 membrane protein compare
BPHYT_RS30130 +0.7 1.2 AraC family transcriptional regulator compare
BPHYT_RS18805 +0.7 3.7 flagellar basal body protein FliL compare
BPHYT_RS05235 +0.7 0.9 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS20880 +0.7 0.8 polyketide cyclase compare
BPHYT_RS04010 +0.7 1.1 glycosyl transferase compare
BPHYT_RS20750 +0.7 1.4 LacI family transcriptional regulator compare
BPHYT_RS05290 +0.7 0.9 hypothetical protein compare
BPHYT_RS06105 +0.7 1.1 hypothetical protein compare
BPHYT_RS08235 +0.7 0.9 nucleoprotein, Hfg, host factor I compare
BPHYT_RS31345 +0.7 1.5 malonate transporter compare
BPHYT_RS32725 +0.7 2.8 cobalt transporter compare
BPHYT_RS13835 +0.7 0.9 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS30395 +0.7 1.6 small mechanosensitive ion channel protein MscS compare
BPHYT_RS28000 +0.7 1.4 permease compare
BPHYT_RS10345 +0.7 0.8 flagellar motor protein MotB compare
BPHYT_RS34565 +0.7 1.4 chemotaxis protein compare
BPHYT_RS29710 +0.7 1.6 FAD-binding molybdopterin dehydrogenase compare
BPHYT_RS17050 +0.7 1.4 hypothetical protein compare
BPHYT_RS22870 +0.6 1.3 copper transporter compare
BPHYT_RS25820 +0.6 1.3 sugar ABC transporter compare
BPHYT_RS15300 +0.6 2.3 hypothetical protein compare
BPHYT_RS25875 +0.6 1.1 type III secretion protein compare
BPHYT_RS26975 +0.6 1.0 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS17205 +0.6 1.4 peroxiredoxin compare
BPHYT_RS24205 +0.6 1.4 aldolase compare
BPHYT_RS27455 +0.6 1.1 rod shape-determining protein MreB compare
BPHYT_RS23520 +0.6 1.6 peroxidase compare
BPHYT_RS10715 +0.6 1.0 acyl-CoA dehydrogenase compare
BPHYT_RS08060 +0.6 2.8 ribosome maturation factor RimP compare
BPHYT_RS01530 +0.6 1.2 penicillin-binding protein 2 compare
BPHYT_RS29865 +0.6 1.2 sugar transferase compare
BPHYT_RS28535 +0.6 0.8 response regulator receiver compare
BPHYT_RS32470 +0.6 1.3 membrane protein compare
BPHYT_RS17540 +0.6 5.2 L-aspartate/L-glutamate/L-glutamine:H+ symporter (from data) compare
BPHYT_RS03330 +0.6 1.9 hypothetical protein compare
BPHYT_RS35955 +0.6 0.9 hypothetical protein compare
BPHYT_RS20115 +0.6 1.2 transcriptional regulator compare
BPHYT_RS21990 +0.6 2.2 FAD-dependent oxidoreductase compare
BPHYT_RS29720 +0.6 0.7 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS33135 +0.6 0.9 LysR family transcriptional regulator compare
BPHYT_RS29655 +0.6 1.2 polysaccharide deacetylase compare
BPHYT_RS36130 +0.6 1.1 hypothetical protein compare
BPHYT_RS25955 +0.6 0.7 transcriptional regulator compare
BPHYT_RS03375 +0.6 1.2 NAD(P) transhydrogenase compare
BPHYT_RS23675 +0.6 1.2 lysine transporter LysE compare
BPHYT_RS27425 +0.6 2.2 C4-dicarboxylate ABC transporter compare
BPHYT_RS24220 +0.6 1.5 alpha/beta hydrolase compare
BPHYT_RS28485 +0.6 0.9 GntR family transcriptional regulator compare
BPHYT_RS04095 +0.6 0.9 SAM-dependent methyltransferase PhcB compare
BPHYT_RS02185 +0.6 2.1 hypothetical protein compare
BPHYT_RS26025 +0.6 0.6 hypothetical protein compare
BPHYT_RS34530 +0.6 1.4 LysR family transcriptional regulator compare
BPHYT_RS08665 +0.6 0.6 hypothetical protein compare
BPHYT_RS30610 +0.6 1.1 major facilitator transporter compare
BPHYT_RS10215 +0.6 1.0 sulfate transporter compare
BPHYT_RS05155 +0.6 3.1 acetyltransferase GCN5 compare
BPHYT_RS35780 +0.6 2.0 Hrp-dependent type III effector protein compare
BPHYT_RS31650 +0.6 1.2 FAD-binding protein compare
BPHYT_RS31630 +0.6 2.0 hypothetical protein compare
BPHYT_RS30510 +0.6 1.2 aldehyde dehydrogenase compare
BPHYT_RS01435 +0.6 5.3 LysR family transcriptional regulator compare
BPHYT_RS25335 +0.6 0.6 hypothetical protein compare
BPHYT_RS03470 +0.6 2.6 LysR family transcriptional regulator compare
BPHYT_RS32415 +0.6 1.9 translation elongation factor compare
BPHYT_RS30190 +0.6 2.8 ABC transporter permease compare
BPHYT_RS29705 +0.6 2.4 (2Fe-2S)-binding protein compare
BPHYT_RS27060 +0.6 1.3 photosystem reaction center subunit H compare
BPHYT_RS27230 +0.6 1.2 hypothetical protein compare
BPHYT_RS09725 +0.6 1.8 exopolysaccharide biosynthesis protein compare
BPHYT_RS29340 +0.6 2.8 hypothetical protein compare
BPHYT_RS25270 +0.6 1.7 multidrug MFS transporter compare
BPHYT_RS31385 +0.6 1.4 ketoacyl reductase compare
BPHYT_RS12520 +0.6 1.2 nicotinate phosphoribosyltransferase compare
BPHYT_RS29975 +0.6 1.5 multidrug ABC transporter ATP-binding protein compare
BPHYT_RS20905 +0.6 0.8 hypothetical protein compare
BPHYT_RS02660 +0.6 0.7 membrane protein compare
BPHYT_RS09095 +0.6 1.7 NADPH:quinone oxidoreductase compare
BPHYT_RS18820 +0.6 1.8 flagellar biosynthesis protein FliO compare
BPHYT_RS14555 +0.5 1.9 CreA family protein compare
BPHYT_RS11155 +0.5 0.8 hypothetical protein compare
BPHYT_RS09345 +0.5 2.2 TetR family transcriptional regulator compare
BPHYT_RS27290 +0.5 1.6 pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS29395 +0.5 1.2 hydroxypyruvate isomerase compare
BPHYT_RS27430 +0.5 1.0 LysR family transcriptional regulator compare
BPHYT_RS17535 +0.5 1.5 extradiol ring-cleavage dioxygenase class III protein subunit B compare
BPHYT_RS25160 +0.5 1.8 NAD/NADP-dependent betaine aldehyde dehydrogenase compare
BPHYT_RS15590 +0.5 1.9 amino acid ABC transporter ATPase compare
BPHYT_RS05090 +0.5 2.2 agmatinase compare
BPHYT_RS09225 +0.5 2.3 LysR family transcriptional regulator compare
BPHYT_RS21790 +0.5 1.4 hypothetical protein compare
BPHYT_RS13170 +0.5 1.6 ATPase compare
BPHYT_RS08135 +0.5 1.0 hypothetical protein compare
BPHYT_RS15260 +0.5 1.2 chorismate mutase compare
BPHYT_RS35435 +0.5 1.9 glutathione S-transferase compare
BPHYT_RS29870 +0.5 1.4 2-dehydropantoate 2-reductase compare
BPHYT_RS32870 +0.5 1.3 hypothetical protein compare
BPHYT_RS27030 +0.5 0.8 transcriptional regulator compare
BPHYT_RS33740 +0.5 2.0 hypothetical protein compare
BPHYT_RS29200 +0.5 2.8 hypothetical protein compare
BPHYT_RS05190 +0.5 1.7 ADP-heptose--LPS heptosyltransferase compare
BPHYT_RS01280 +0.5 1.2 hypothetical protein compare
BPHYT_RS11020 +0.5 1.6 transporter compare
BPHYT_RS34775 +0.5 1.9 diguanylate cyclase compare
BPHYT_RS35310 +0.5 0.9 GCN5 family N-acetyltransferase compare
BPHYT_RS13385 +0.5 1.9 hypothetical protein compare
BPHYT_RS24025 +0.5 2.6 histidine utilization repressor compare
BPHYT_RS10845 +0.5 1.5 UbiD family decarboxylase compare
BPHYT_RS09245 +0.5 1.5 ABC transporter ATP-binding protein compare
BPHYT_RS21325 +0.5 1.1 hypothetical protein compare
BPHYT_RS23465 +0.5 2.0 aliphatic nitrilase compare
BPHYT_RS28520 +0.5 2.0 hypothetical protein compare
BPHYT_RS21350 +0.5 1.8 ADP-glucose pyrophosphorylase compare
BPHYT_RS30195 +0.5 2.4 ABC transporter substrate-binding protein compare
BPHYT_RS27155 +0.5 0.9 peroxiredoxin compare
BPHYT_RS20280 +0.5 1.3 hypothetical protein compare
BPHYT_RS06915 +0.5 1.1 hypothetical protein compare
BPHYT_RS30665 +0.5 2.2 peroxidase compare
BPHYT_RS06120 +0.5 1.7 heat-shock protein compare
BPHYT_RS25970 +0.5 0.6 urea amidolyase compare
BPHYT_RS28075 +0.5 0.6 cytochrome B561 compare
BPHYT_RS29805 +0.5 1.3 lysine transporter LysE compare
BPHYT_RS21870 +0.5 1.5 hypothetical protein compare
BPHYT_RS35010 +0.5 2.0 2-alkenal reductase compare
BPHYT_RS27305 +0.5 1.1 hypothetical protein compare
BPHYT_RS13250 +0.5 1.8 hypothetical protein compare
BPHYT_RS21780 +0.5 1.3 MFS transporter compare
BPHYT_RS04385 +0.5 1.9 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS29650 +0.5 2.3 3-oxoacyl-ACP reductase compare
BPHYT_RS04340 +0.5 1.7 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For nutrient L-Serine in Burkholderia phytofirmans PsJN

For nutrient L-Serine across organisms