Experiment set4IT037 for Rhodospirillum rubrum S1H

Compare to:

SMN_rich_anaerobic

200 most important genes:

  gene name fitness t score description  
Rru_A1620 -2.2 -5.0 hypothetical protein (NCBI) compare
Rru_A0683 -1.6 -0.7 3-deoxy-7-phosphoheptulonate synthase (NCBI) compare
Rru_A1841 -1.5 -1.5 Flavin reductase-like, FMN-binding (NCBI) compare
Rru_A3773 -1.4 -2.2 CBS domain protein (NCBI) compare
Rru_A0574 -1.3 -4.1 Carboxylyase-related protein (NCBI) compare
Rru_A3397 -1.1 -1.5 hypothetical protein (NCBI) compare
Rru_A1051 -1.1 -1.5 Phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI) compare
Rru_A0058 -1.1 -2.0 Dihydrokaempferol 4-reductase (NCBI) compare
Rru_A2847 -0.9 -2.6 Transcriptional regulators, TraR/DksA family (NCBI) compare
Rru_A1436 -0.9 -4.9 Histidine Kinase (NCBI) compare
Rru_A3547 -0.9 -2.9 hypothetical protein (NCBI) compare
Rru_A1179 -0.9 -1.4 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A0454 -0.9 -2.6 Leucyl aminopeptidase (NCBI) compare
Rru_A3393 -0.8 -2.2 Penicillin-binding protein 1A (NCBI) compare
Rru_A1849 -0.8 -2.0 Recombination protein O, RecO (NCBI) compare
Rru_A2874 -0.8 -4.7 FAD dependent oxidoreductase (NCBI) compare
Rru_A3384 -0.8 -3.7 Precorrin-4 C11-methyltransferase region (NCBI) compare
Rru_A3642 -0.8 -2.0 Negative regulator of class I heat shock protein (NCBI) compare
Rru_A3739 -0.8 -2.9 hypothetical protein (NCBI) compare
Rru_A2260 -0.8 -2.1 hypothetical protein (NCBI) compare
Rru_A0645 -0.8 -1.1 Ribose-phosphate pyrophosphokinase (NCBI) compare
Rru_A2771 -0.8 -3.3 Histidinol dehydrogenase (NCBI) compare
Rru_A0406 -0.7 -3.1 DNA repair protein RadA (NCBI) compare
Rru_A2370 -0.7 -0.6 GCN5-related N-acetyltransferase (NCBI) compare
Rru_A1437 -0.7 -4.1 Sodium:dicarboxylate symporter (NCBI) compare
Rru_A2760 -0.7 -0.9 hypothetical protein (NCBI) compare
Rru_A3367 -0.7 -3.1 Cob(I)alamin adenosyltransferase (NCBI) compare
Rru_A2346 -0.7 -2.6 hypothetical protein (NCBI) compare
Rru_A3539 -0.7 -4.7 GlnB (protein PII) uridylyltransferase, GlnD (NCBI) compare
Rru_A1549 -0.7 -3.2 Trigger factor (NCBI) compare
Rru_A0159 -0.7 -1.5 Exodeoxyribonuclease VII (NCBI) compare
Rru_A2990 -0.7 -4.6 precorrin-2 C20-methyltransferase (NCBI) compare
Rru_A3359 -0.7 -4.0 Cobyrinic acid a,c-diamide synthase CbiA (NCBI) compare
Rru_A2562 -0.7 -3.1 CheW protein (NCBI) compare
Rru_A2510 -0.7 -0.9 hypothetical protein (NCBI) compare
Rru_A1066 -0.6 -1.1 ABC transporter component (NCBI) compare
Rru_A2110 -0.6 -3.9 ATP-dependent Clp protease adaptor protein ClpS (NCBI) compare
Rru_A2109 -0.6 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) compare
Rru_A2988 -0.6 -3.0 Precorrin-6X reductase (NCBI) compare
Rru_A2545 -0.6 -0.9 hypothetical protein (NCBI) compare
Rru_A0770 -0.6 -4.3 Peptidase M23B (NCBI) compare
Rru_A2466 -0.6 -4.4 Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI) compare
Rru_A3640 -0.6 -0.5 Ham1-like protein (NCBI) compare
Rru_A0148 -0.6 -2.4 GTP-binding protein TypA (NCBI) compare
Rru_A1527 -0.6 -3.4 ABC transporter component (NCBI) compare
Rru_A2038 -0.6 -4.1 Glutamate-ammonia-ligase adenylyltransferase (NCBI) compare
Rru_A0207 -0.6 -2.3 Cobalt chelatase, CobT subunit (NCBI) compare
Rru_A0484 -0.6 -2.5 hypothetical protein (NCBI) compare
Rru_A2497 -0.6 -3.1 Peptide chain release factor 3 (NCBI) compare
Rru_A1256 -0.6 -2.0 hypothetical protein (NCBI) compare
Rru_A1900 -0.5 -2.1 Transcriptional Regulator, AsnC family (NCBI) compare
Rru_A0006 -0.5 -1.8 Plasmid maintenance system antidote protein (NCBI) compare
Rru_A3010 -0.5 -3.0 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A3382 -0.5 -3.4 Cobalamin biosynthesis protein CbiB (NCBI) compare
Rru_A3704 -0.5 -2.6 Periplasmic solute binding protein (NCBI) compare
Rru_A2986 -0.5 -3.4 Fumarate reductase/succinate dehydrogenase flavoprotein-like (NCBI) compare
Rru_A2795 -0.5 -1.4 hypothetical protein (NCBI) compare
Rru_A3264 -0.5 -3.7 Histidinol-phosphate aminotransferase (NCBI) compare
Rru_A3766 -0.5 -2.7 Transcriptional Regulator, MucR family (NCBI) compare
Rru_A2166 -0.5 -2.7 hypothetical protein (NCBI) compare
Rru_A3594 -0.5 -2.0 Histidine biosynthesis protein HisF (NCBI) compare
Rru_A0663 -0.5 -1.0 Cold-shock DNA-binding domain protein (NCBI) compare
Rru_A3623 -0.5 -1.1 hypothetical protein (NCBI) compare
Rru_A0432 -0.5 -1.6 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI) compare
Rru_A0607 -0.5 -1.4 Adenine phosphoribosyl transferase (NCBI) compare
Rru_A3694 -0.5 -2.5 hypothetical protein (NCBI) compare
Rru_A1955 -0.5 -0.9 Phosphoribosyltransferase (NCBI) compare
Rru_A1435 -0.5 -2.5 Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) compare
Rru_A1669 -0.5 -1.9 Transcriptional Regulator, MerR family (NCBI) compare
Rru_A3587 -0.5 -1.5 hypothetical protein (NCBI) compare
Rru_A3468 -0.5 -1.6 Transcriptional Regulator, AsnC family (NCBI) compare
Rru_A1191 -0.5 -3.6 3-isopropylmalate dehydrogenase (NCBI) compare
Rru_A2809 -0.5 -3.7 Iron permease FTR1 (NCBI) compare
Rru_A2085 -0.5 -1.6 Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI) compare
Rru_A0973 -0.5 -1.7 hypothetical protein (NCBI) compare
Rru_A0752 -0.5 -1.4 hypothetical protein (NCBI) compare
Rru_AR0059 -0.5 -1.2 tRNA-Gly (NCBI) compare
Rru_A1775 -0.5 -0.9 chromosome segregation and condensation protein ScpA (NCBI) compare
Rru_A1199 -0.5 -2.0 Pyridoxal kinase (NCBI) compare
Rru_A2416 -0.5 -1.1 hypothetical protein (NCBI) compare
Rru_A0534 -0.5 -1.5 hypothetical protein (NCBI) compare
Rru_A0361 -0.5 -1.0 Methylthioadenosine phosphorylase (NCBI) compare
Rru_A2987 -0.5 -2.0 hypothetical protein (NCBI) compare
Rru_A0050 -0.4 -1.9 hypothetical protein (NCBI) compare
Rru_A2512 -0.4 -1.8 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI) compare
Rru_A0010 -0.4 -2.1 Sigma-54 (RpoN) (NCBI) compare
Rru_A1678 -0.4 -1.9 Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI) compare
Rru_A1015 -0.4 -1.5 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A0661 -0.4 -1.4 Hly-III related proteins (NCBI) compare
Rru_A3626 -0.4 -1.0 Glucose inhibited division protein (NCBI) compare
Rru_A2182 -0.4 -2.3 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A1854 -0.4 -3.1 Pyridoxal phosphate biosynthetic protein PdxJ (NCBI) compare
Rru_A1640 -0.4 -1.7 Multiple resistance and pH regulation protein F (NCBI) compare
Rru_A0023 -0.4 -1.0 hypothetical protein (NCBI) compare
Rru_A0100 -0.4 -0.5 hypothetical protein (NCBI) compare
Rru_A1286 -0.4 -0.7 hypothetical protein (NCBI) compare
Rru_A0521 -0.4 -3.0 CheA Signal Transduction Histidine Kinases (STHK) (NCBI) compare
Rru_A2808 -0.4 -1.6 periplasmic protein-probably involved in high-affinity Fe2+ transport (NCBI) compare
Rru_A2772 -0.4 -1.3 ATP phosphoribosyltransferase (NCBI) compare
Rru_A1348 -0.4 -0.8 Protein of unknown function DUF81 (NCBI) compare
Rru_A0181 -0.4 -2.1 hypothetical protein (NCBI) compare
Rru_A0128 -0.4 -2.2 Na+/H+ antiporter NhaA (NCBI) compare
Rru_A3681 -0.4 -2.0 YceI (NCBI) compare
Rru_A1112 -0.4 -0.9 hypothetical protein (NCBI) compare
Rru_A1646 -0.4 -1.8 ETC complex I subunit conserved region (NCBI) compare
Rru_A0150 -0.4 -1.2 hypothetical protein (NCBI) compare
Rru_A1178 -0.4 -2.0 Anticodon-binding (NCBI) compare
Rru_A1767 -0.4 -0.8 peptidase M23B (NCBI) compare
Rru_A1031 -0.4 -1.6 Ethanolamine ammonia-lyase (NCBI) compare
Rru_A2383 -0.4 -1.5 ABC transporter component (NCBI) compare
Rru_A1517 -0.4 -1.7 transposase of ISBst12-like element (NCBI) compare
Rru_A1513 -0.4 -1.9 hypothetical protein (NCBI) compare
Rru_A3467 -0.4 -1.9 Amidinotransferase (NCBI) compare
Rru_A1085 -0.4 -1.7 Metallophosphoesterase (NCBI) compare
Rru_A1571 -0.4 -1.9 metallo-beta-lactamase (NCBI) compare
Rru_A0537 -0.4 -1.3 Protein of unknown function DUF955 (NCBI) compare
Rru_A1507 -0.4 -0.8 short-chain dehydrogenase/reductase SDR (NCBI) compare
Rru_A0053 -0.4 -2.9 Carboxyl transferase (NCBI) compare
Rru_A1180 -0.4 -1.9 Major facilitator superfamily MFS_1 (NCBI) compare
Rru_A3329 -0.4 -1.6 hypothetical protein (NCBI) compare
Rru_A2816 -0.4 -0.6 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A3649 -0.4 -1.6 2',5' RNA ligase (NCBI) compare
Rru_A1611 -0.4 -1.4 Cobalamin synthesis protein/P47K (NCBI) compare
Rru_A1845 -0.4 -2.4 Arginyltransferase (NCBI) compare
Rru_A2703 -0.4 -2.2 RNA methyltransferase TrmH, group 3 (NCBI) compare
Rru_A2989 -0.4 -1.7 Precorrin-3B C17-methyltransferase region (NCBI) compare
Rru_A0884 -0.4 -2.0 Putative FecR (NCBI) compare
Rru_A1677 -0.4 -2.1 Signal transduction histidine kinase, nitrogen specific, NtrB (NCBI) compare
Rru_A2939 -0.3 -2.1 hypothetical protein (NCBI) compare
Rru_A0398 -0.3 -1.0 Thiol-disulfide isomerase and thioredoxins-like (NCBI) compare
Rru_A3476 -0.3 -1.1 Transcriptional Regulator, LysR family (NCBI) compare
Rru_A0021 -0.3 -0.8 Transcriptional Regulator, MarR family (NCBI) compare
Rru_A2424 -0.3 -2.3 Gamma-glutamyltranspeptidase (NCBI) compare
Rru_A0670 -0.3 -1.1 Cobalbumin biosynthesis enzyme (NCBI) compare
Rru_A1632 -0.3 -2.4 NADH dehydrogenase (quinone) (NCBI) compare
Rru_A1174 -0.3 -2.3 Endoribonuclease L-PSP (NCBI) compare
Rru_A1048 -0.3 -0.8 Protein of unknown function DUF465 (NCBI) compare
Rru_A2806 -0.3 -2.4 Protein of unknown function DUF214 (NCBI) compare
Rru_A2373 -0.3 -1.1 Putative FecR (NCBI) compare
Rru_A3366 -0.3 -2.8 Cobaltochelatase, CobN subunit (NCBI) compare
Rru_A0655 -0.3 -2.3 Transcriptional Regulator, AsnC family (NCBI) compare
Rru_A2353 -0.3 -2.1 Tetratricopeptide TPR_4 (NCBI) compare
Rru_A1198 -0.3 -1.6 Lysine exporter protein (LYSE/YGGA) (NCBI) compare
Rru_A0456 -0.3 -1.9 Predicted transcriptional regulator (NCBI) compare
Rru_A3381 -0.3 -1.9 Cobyric acid synthase CobQ (NCBI) compare
Rru_A0562 -0.3 -1.3 Peptidase S1 and S6, chymotrypsin/Hap (NCBI) compare
Rru_A1111 -0.3 -2.5 Pseudouridine synthase, RluD (NCBI) compare
Rru_A0032 -0.3 -1.6 TPR repeat (NCBI) compare
Rru_A2037 -0.3 -1.9 hypothetical protein (NCBI) compare
Rru_A2865 -0.3 -2.1 Peptidase M24 (NCBI) compare
Rru_A0291 -0.3 -1.2 hypothetical protein (NCBI) compare
Rru_A2140 -0.3 -1.6 Transcriptional Regulator, XRE family (NCBI) compare
Rru_A1950 -0.3 -0.2 Transcriptional regulator, ModE family (NCBI) compare
Rru_A1884 -0.3 -1.5 Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI) compare
Rru_A1627 -0.3 -1.3 hypothetical protein (NCBI) compare
Rru_A1933 -0.3 -1.2 Uroporphyrin-III C-methyltransferase (NCBI) compare
Rru_A0671 -0.3 -1.6 cobalamin synthesis CobW protein (NCBI) compare
Rru_A1208 -0.3 -1.8 AFG1-like ATPase (NCBI) compare
Rru_A2388 -0.3 -2.4 ABC-3 transporter component (NCBI) compare
Rru_A2804 -0.3 -2.0 ABC transporter component (NCBI) compare
Rru_A1264 -0.3 -1.2 Short-chain dehydrogenase/reductase SDR (NCBI) compare
Rru_A2892 -0.3 -2.0 ABC-3 transporter component (NCBI) compare
Rru_A3748 -0.3 -1.5 hypothetical protein (NCBI) compare
Rru_A2592 -0.3 -1.0 hypothetical protein (NCBI) compare
Rru_A0796 -0.3 -1.3 Radical SAM (NCBI) compare
Rru_A0073 -0.3 -1.2 ribosomal subunit interface protein, putative (NCBI) compare
Rru_A0213 -0.3 -1.3 hypothetical protein (NCBI) compare
Rru_A1126 -0.3 -1.3 ISBm1, transposase orfA (NCBI) compare
Rru_A1691 -0.3 -2.0 Spermine synthase (NCBI) compare
Rru_A3614 -0.3 -2.0 Maf-like protein (NCBI) compare
Rru_A2381 -0.3 -1.7 lipocalin-like protein (NCBI) compare
Rru_A0117 -0.3 -1.2 ABC transporter component (NCBI) compare
Rru_A0665 -0.3 -0.7 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A2992 -0.3 -1.3 Precorrin-6Y C5,15-methyltransferase (decarboxylating) (NCBI) compare
Rru_A0206 -0.3 -1.0 Cobalt chelatase, pCobS small subunit (NCBI) compare
Rru_A2209 -0.3 -2.6 AsmA (NCBI) compare
Rru_A0041 -0.3 -0.8 Cytochrome c, class II (NCBI) compare
Rru_A1207 -0.3 -2.1 exopolyphosphatase-related protein (NCBI) compare
Rru_A2004 -0.3 -0.9 Transcriptional Regulator, LysR family (NCBI) compare
Rru_A1634 -0.3 -2.4 NADH dehydrogenase (quinone) (NCBI) compare
Rru_A1675 -0.3 -2.3 Cytochrome c assembly protein (NCBI) compare
Rru_A3627 -0.3 -1.6 Cobyrinic acid a,c-diamide synthase (NCBI) compare
Rru_A1490 -0.3 -2.2 Protein-tyrosine kinase (NCBI) compare
Rru_A3635 -0.3 -1.2 hypothetical protein (NCBI) compare
Rru_A3139 -0.3 -1.9 Transcriptional Regulator, GntR family (NCBI) compare
Rru_A3371 -0.3 -1.7 Zinc-containing alcohol dehydrogenase superfamily (NCBI) compare
Rru_A2767 -0.3 -1.9 ribonuclease G (RNase G) (NCBI) compare
Rru_A0652 -0.3 -1.2 Pseudouridine synthase, Rsu (NCBI) compare
Rru_A1735 -0.3 -0.6 hypothetical protein (NCBI) compare
Rru_A1867 -0.3 -0.8 Protein of unknown function DUF583 (NCBI) compare
Rru_A0404 -0.3 -2.4 Amidophosphoribosyl transferase (NCBI) compare
Rru_A1730 -0.3 -1.2 nuclease (NCBI) compare
Rru_A0575 -0.3 -2.1 Peptidase U62, modulator of DNA gyrase (NCBI) compare
Rru_A2216 -0.3 -1.3 Protein of unknown function DUF1127 (NCBI) compare
Rru_A3455 -0.3 -2.0 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A2422 -0.3 -2.2 hypothetical protein (NCBI) compare
Rru_A3057 -0.3 -1.4 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (NCBI) compare
Rru_A0755 -0.3 -1.4 chemotaxis sensory transducer (NCBI) compare
Rru_A0260 -0.3 -1.3 Protein of unknown function DUF466 (NCBI) compare
Rru_A1301 -0.3 -1.4 Histidine ammonia-lyase (NCBI) compare


Specific Phenotypes

None in this experiment

For Rhodospirillum rubrum S1H in anaerboic nitrogen source experiments