Experiment set4IT037 for Shewanella loihica PV-4

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Shew_2049 +3.0 18.1 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_1301 +2.9 25.1 phosphoribosylformylglycinamidine synthase (RefSeq) compare
Shew_2572 +2.7 12.4 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_0296 +2.6 4.2 heat shock protein Hsp20 (RefSeq) compare
Shew_1512 +2.5 13.4 phosphoribosylglycinamide formyltransferase (RefSeq) compare
Shew_1224 +2.4 20.8 sodium:dicarboxylate symporter (RefSeq) compare
Shew_2302 +2.4 16.8 amidophosphoribosyltransferase (RefSeq) compare
Shew_0755 +2.4 13.6 fructose-1,6-bisphosphate aldolase (RefSeq) compare
Shew_3413 +2.3 18.7 phosphoribosylamine--glycine ligase (RefSeq) compare
Shew_1128 +2.3 13.0 LysR family transcriptional regulator (RefSeq) compare
Shew_3708 +2.3 18.3 TetR family transcriptional regulator (RefSeq) compare
Shew_1819 +2.3 8.7 GntR family transcriptional regulator (RefSeq) compare
Shew_3488 +2.2 6.3 ribonuclease PH (RefSeq) compare
Shew_3412 purH +2.2 17.0 bifunctionalphosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (RefSeq) compare
Shew_2382 +2.0 12.0 cysteine synthase A (RefSeq) compare
Shew_2502 +1.9 8.5 ABC transporter-related protein (RefSeq) compare
Shew_1298 guaA +1.9 15.6 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_1425 +1.9 11.6 adenylyl-sulfate kinase (RefSeq) compare
Shew_1013 +1.9 15.9 aspartate carbamoyltransferase (RefSeq) compare
Shew_1559 +1.8 2.3 hypothetical protein (RefSeq) compare
Shew_3225 +1.8 11.8 glutathione synthetase (RefSeq) compare
Shew_3311 +1.7 10.7 RNA polymerase factor sigma-54 (RefSeq) compare
Shew_0763 +1.7 10.1 putative PAS/PAC sensor protein (RefSeq) compare
Shew_3710 tdh +1.7 8.1 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_1186 +1.7 3.3 transcriptional regulator NrdR (RefSeq) compare
Shew_1227 +1.7 2.9 glutamate--cysteine ligase (RefSeq) compare
Shew_2410 +1.7 1.5 beta-ketoacyl synthase (RefSeq) compare
Shew_2812 deoD +1.7 10.0 purine nucleoside phosphorylase (RefSeq) compare
Shew_0618 +1.7 3.1 hypothetical protein (RefSeq) compare
Shew_3709 +1.7 13.3 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_0565 +1.7 3.4 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) compare
Shew_3377 +1.6 2.0 twin-arginine translocation protein, TatB subunit (RefSeq) compare
Shew_3316 +1.6 13.2 magnesium transporter (RefSeq) compare
Shew_3560 +1.6 9.0 signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) compare
Shew_0225 +1.6 2.2 phosphoheptose isomerase (RefSeq) compare
Shew_1602 +1.6 2.5 malonyl CoA-acyl carrier protein transacylase (RefSeq) compare
Shew_3273 +1.5 8.5 hypothetical protein (RefSeq) compare
Shew_2837 +1.5 1.9 transcription elongation factor GreA (RefSeq) compare
Shew_2320 +1.5 10.1 RNA methyltransferase (RefSeq) compare
Shew_0421 +1.5 1.7 phage shock protein C, PspC (RefSeq) compare
Shew_1230 +1.5 4.9 phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq) compare
Shew_0022 +1.5 10.1 TrkH family potassium uptake protein (RefSeq) compare
Shew_3561 +1.4 9.7 nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) compare
Shew_2357 +1.4 4.3 D,D-heptose 1,7-bisphosphate phosphatase (RefSeq) compare
Shew_1809 +1.4 10.6 NAD-glutamate dehydrogenase (RefSeq) compare
Shew_0867 +1.4 2.4 malate dehydrogenase (RefSeq) compare
Shew_3487 pyrE +1.4 6.4 orotate phosphoribosyltransferase (RefSeq) compare
Shew_2481 +1.4 9.8 porin (RefSeq) compare
Shew_1287 +1.4 4.8 hypothetical protein (RefSeq) compare
Shew_2000 +1.4 2.2 glyceraldehyde-3-phosphate dehydrogenase (RefSeq) compare
Shew_2008 +1.4 1.4 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1402 +1.3 10.9 glucose-1-phosphate thymidylyltransferase (RefSeq) compare
Shew_2571 +1.3 10.0 propionyl-CoA carboxylase (RefSeq) compare
Shew_3621 +1.3 1.5 RNA-binding S4 domain-containing protein (RefSeq) compare
Shew_3378 +1.3 3.0 Sec-independent protein translocase, TatC subunit (RefSeq) compare
Shew_0330 +1.3 1.0 nifR3 family TIM-barrel protein (RefSeq) compare
Shew_2838 carB +1.3 10.0 carbamoyl phosphate synthase large subunit (RefSeq) compare
Shew_1341 +1.2 3.8 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_1210 +1.2 4.7 stationary-phase survival protein SurE (RefSeq) compare
Shew_2839 +1.2 10.1 carbamoyl phosphate synthase small subunit (RefSeq) compare
Shew_3224 +1.2 5.4 hypothetical protein (RefSeq) compare
Shew_0534 +1.2 4.6 major facilitator transporter (RefSeq) compare
Shew_1563 +1.2 9.8 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_1822 +1.2 4.0 aconitate hydratase (RefSeq) compare
Shew_3499 +1.2 4.9 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Shew_0459 +1.1 3.8 PAS/PAC sensor hybrid histidine kinase (RefSeq) compare
Shew_1411 +1.1 8.0 hexapaptide repeat-containing transferase (RefSeq) compare
Shew_0320 +1.1 6.8 frataxin family protein (RefSeq) compare
Shew_1931 +1.1 2.1 alkylphosphonate utilization operon protein PhnA (RefSeq) compare
Shew_3312 +1.1 4.9 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) compare
Shew_2573 +1.1 9.4 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_1302 +1.1 3.8 cytochrome bd ubiquinol oxidase, subunit I (RefSeq) compare
Shew_2907 +1.1 2.0 invasion gene expression up-regulator, SirB (RefSeq) compare
Shew_0613 +1.1 7.6 cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq) compare
Shew_1601 +1.1 2.2 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_1050 +1.1 6.2 sigma E regulatory protein, MucB/RseB (RefSeq) compare
Shew_2637 +1.0 3.2 PII uridylyl-transferase (RefSeq) compare
Shew_2906 +1.0 2.5 hypothetical protein (RefSeq) compare
Shew_3189 +1.0 2.9 hypothetical protein (RefSeq) compare
Shew_0462 +1.0 1.2 hypothetical protein (RefSeq) compare
Shew_2211 +1.0 3.3 phosphoribosylaminoimidazole-succinocarboxamidesynthase (RefSeq) compare
Shew_1407 +1.0 7.1 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1035 +1.0 1.7 LysR family transcriptional regulator (RefSeq) compare
Shew_0086 +1.0 9.2 electron-transferring-flavoproteindehydrogenase (RefSeq) compare
Shew_2813 +1.0 2.5 phosphopentomutase (RefSeq) compare
Shew_3500 +1.0 3.2 putative endoribonuclease L-PSP (RefSeq) compare
Shew_1657 sucC +1.0 2.0 succinyl-CoA synthetase subunit beta (RefSeq) compare
Shew_2086 +1.0 2.2 hypothetical protein (RefSeq) compare
Shew_3295 +1.0 6.4 AFG1 family ATPase (RefSeq) compare
Shew_1820 prpB +1.0 2.2 2-methylisocitrate lyase (RefSeq) compare
Shew_1439 +1.0 6.1 maleylacetoacetate isomerase (RefSeq) compare
Shew_2558 +1.0 1.8 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq) compare
Shew_2337 tgt +1.0 4.1 queuine tRNA-ribosyltransferase (RefSeq) compare
Shew_1185 glyA +0.9 5.3 serine hydroxymethyltransferase (RefSeq) compare
Shew_0127 +0.9 3.0 LexA repressor (RefSeq) compare
Shew_1594 +0.9 4.7 RluA family pseudouridine synthase (RefSeq) compare
Shew_2087 +0.9 3.4 hypothetical protein (RefSeq) compare
Shew_0580 +0.9 2.4 succinylglutamic semialdehyde dehydrogenase (RefSeq) compare
Shew_2584 +0.9 6.3 electron transfer flavoprotein beta-subunit (RefSeq) compare
Shew_0834 +0.9 1.1 hypothetical protein (RefSeq) compare
Shew_0024 +0.9 1.5 ArsR family transcriptional regulator (RefSeq) compare
Shew_2770 +0.9 0.9 polyprenyl synthetase (RefSeq) compare
Shew_1839 +0.9 1.7 hypothetical protein (RefSeq) compare
Shew_1851 +0.9 1.3 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_2814 deoA +0.9 2.8 thymidine phosphorylase (RefSeq) compare
Shew_1922 +0.9 2.4 phosphoglucomutase (RefSeq) compare
Shew_0993 +0.8 1.7 Eco57I restriction endonuclease (RefSeq) compare
Shew_2962 +0.8 2.6 malate dehydrogenase (RefSeq) compare
Shew_1398 +0.8 3.2 NusG antitermination factor (RefSeq) compare
Shew_1823 +0.8 2.2 putative AcnD-accessory protein PrpF (RefSeq) compare
Shew_0441 +0.8 4.7 dehydratase (RefSeq) compare
Shew_3197 +0.8 1.0 hypothetical protein (RefSeq) compare
Shew_1437 +0.8 6.0 transcriptional regulator, TyrR (RefSeq) compare
Shew_1389 +0.8 1.7 cobyrinic acid a,c-diamide synthase (RefSeq) compare
Shew_0193 +0.8 3.0 cytochrome c-type biogenesis protein CcmF (RefSeq) compare
Shew_1092 +0.8 6.4 amino acid carrier protein (RefSeq) compare
Shew_3385 uvrD +0.8 3.8 DNA-dependent helicase II (RefSeq) compare
Shew_3681 +0.8 4.1 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_0359 fre +0.8 3.8 FMN reductase (RefSeq) compare
Shew_1859 +0.8 1.1 carbonate dehydratase (RefSeq) compare
Shew_0268 +0.8 1.0 transcriptional antiterminator, Rof (RefSeq) compare
Shew_1785 +0.8 1.3 band 7 protein (RefSeq) compare
Shew_2285 +0.8 0.9 UDP-glucose 4-epimerase (RefSeq) compare
Shew_0191 +0.8 1.3 cytochrome c, class I (RefSeq) compare
Shew_3431 aceE +0.8 6.0 pyruvate dehydrogenase subunit E1 (RefSeq) compare
Shew_3446 +0.8 4.8 peptidase M23B (RefSeq) compare
Shew_0430 +0.8 2.5 histone family protein DNA-binding protein (RefSeq) compare
Shew_1403 +0.8 5.6 dTDP-4-dehydrorhamnose reductase (RefSeq) compare
Shew_2498 +0.7 1.2 extracellular solute-binding protein (RefSeq) compare
Shew_2820 prfC +0.7 1.1 peptide chain release factor 3 (RefSeq) compare
Shew_0799 +0.7 1.7 MarR family transcriptional regulator (RefSeq) compare
Shew_3432 pdhR +0.7 2.5 transcriptional regulator PdhR (RefSeq) compare
Shew_1713 +0.7 2.9 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_3062 +0.7 5.2 glycine dehydrogenase (RefSeq) compare
Shew_0627 +0.7 4.6 hypothetical protein (RefSeq) compare
Shew_3568 +0.7 3.6 cation diffusion facilitator family transporter (RefSeq) compare
Shew_0469 +0.7 0.7 pentapeptide repeat-containing protein (RefSeq) compare
Shew_2414 +0.7 0.7 ATP-NAD/AcoX kinase (RefSeq) compare
Shew_0585 +0.7 2.8 cAMP-regulatory protein (RefSeq) compare
Shew_1213 +0.7 1.5 RpoD family RNA polymerase sigma factor (RefSeq) compare
Shew_2667 +0.7 4.4 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_2241 +0.7 1.9 hypothetical protein (RefSeq) compare
Shew_2409 +0.7 1.6 short chain dehydrogenase (RefSeq) compare
Shew_2919 +0.7 2.0 translation-associated GTPase (RefSeq) compare
Shew_3628 +0.7 1.0 MgtC/SapB transporter (RefSeq) compare
Shew_2228 +0.7 4.5 inosine kinase (RefSeq) compare
Shew_1833 +0.7 1.9 putative serine protein kinase, PrkA (RefSeq) compare
Shew_3302 +0.7 1.2 hypothetical protein (RefSeq) compare
Shew_3395 +0.7 1.0 radical SAM domain-containing protein (RefSeq) compare
Shew_0342 +0.7 4.4 hypothetical protein (RefSeq) compare
Shew_1714 +0.7 2.4 alpha/beta hydrolase fold (RefSeq) compare
Shew_2950 +0.7 1.6 RluA family pseudouridine synthase (RefSeq) compare
Shew_3305 +0.7 1.7 CaCA family Na(+)/Ca(+) antiporter (RefSeq) compare
Shew_R0033 +0.7 1.7 tRNA-Arg (RefSeq) compare
Shew_1932 cls +0.7 3.1 cardiolipin synthetase (RefSeq) compare
Shew_2976 +0.7 1.6 hypothetical protein (RefSeq) compare
Shew_2639 +0.7 2.2 hypothetical protein (RefSeq) compare
Shew_2184 +0.7 1.8 septum site-determining protein MinC (RefSeq) compare
Shew_0728 +0.7 4.6 dihydroorotase (RefSeq) compare
Shew_R0049 +0.7 2.8 tRNA-Pro (RefSeq) compare
Shew_0570 +0.6 1.2 ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) compare
Shew_2419 +0.6 5.3 phosphohistidine phosphatase, SixA (RefSeq) compare
Shew_0615 +0.6 4.3 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (RefSeq) compare
Shew_2174 +0.6 1.0 fatty acid metabolism regulator (RefSeq) compare
Shew_0592 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_0614 +0.6 1.6 cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq) compare
Shew_3556 +0.6 1.4 aminotransferase, class V (RefSeq) compare
Shew_1981 +0.6 3.1 AraC family transcriptional regulator (RefSeq) compare
Shew_2202 +0.6 0.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (RefSeq) compare
Shew_2748 +0.6 3.0 PAS/PAC sensor signal transduction histidine kinase (RefSeq) compare
Shew_2554 +0.6 1.1 outer membrane protein W (RefSeq) compare
Shew_2842 +0.6 1.0 peptidase M48, Ste24p (RefSeq) compare
Shew_2074 +0.6 3.1 TonB-dependent receptor (RefSeq) compare
Shew_1667 +0.6 2.4 acetyl-CoA acetyltransferase (RefSeq) compare
Shew_2666 +0.6 4.6 omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq) compare
Shew_1266 +0.6 1.0 XRE family transcriptional regulator (RefSeq) compare
Shew_2785 +0.6 0.7 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) compare
Shew_0540 +0.6 2.1 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_2361 +0.6 1.0 proline racemase (RefSeq) compare
Shew_2025 +0.6 3.5 leucine-responsive transcriptional regulator (RefSeq) compare
Shew_1935 +0.6 2.4 hypothetical protein (RefSeq) compare
Shew_1978 +0.6 0.9 hypothetical protein (RefSeq) compare
Shew_1773 +0.6 1.6 LysR family transcriptional regulator (RefSeq) compare
Shew_2115 +0.6 4.0 lytic transglycosylase, catalytic (RefSeq) compare
Shew_1111 +0.6 2.0 LacI family transcription regulator (RefSeq) compare
Shew_2504 +0.6 3.4 PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq) compare
Shew_2890 +0.6 1.3 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_1021 +0.6 5.1 peptidase M23B (RefSeq) compare
Shew_1490 +0.6 0.6 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) compare
Shew_3682 +0.6 4.9 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_0626 +0.6 2.4 hypothetical protein (RefSeq) compare
Shew_1806 +0.6 1.3 hypothetical protein (RefSeq) compare
Shew_1925 +0.6 2.7 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (RefSeq) compare
Shew_0410 +0.6 3.5 peptidase U62, modulator of DNA gyrase (RefSeq) compare
Shew_1011 +0.6 2.1 citrate transporter (RefSeq) compare
Shew_1401 +0.6 3.6 dTDP-glucose 4,6 dehydratase (RefSeq) compare
Shew_0777 +0.6 0.8 two-component response regulator (RefSeq) compare
Shew_2665 +0.6 4.9 beta-ketoacyl synthase (RefSeq) compare
Shew_1289 +0.6 2.2 hypothetical protein (RefSeq) compare
Shew_3144 +0.6 3.1 UDP-N-acetylmuramate (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella loihica PV-4 in lb experiments