Experiment set4IT036 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Growth at pH7 and carbon source D-Glucose

200 most important genes:

  gene name fitness t score description  
PFLU_RS01645 -5.8 -7.9 S41 family peptidase compare
PFLU_RS03645 -5.5 -13.2 tetratricopeptide repeat protein compare
PFLU_RS28695 -4.8 -5.7 phosphoglycerate dehydrogenase compare
PFLU_RS02490 -4.1 -12.4 phosphoserine phosphatase SerB compare
PFLU_RS24125 -4.1 -2.8 cold-shock protein compare
PFLU_RS23590 -4.0 -2.9 gluconokinase compare
PFLU_RS31800 -3.9 -3.0 hypothetical protein compare
PFLU_RS25760 -3.9 -13.0 glucose-6-phosphate isomerase compare
PFLU_RS12975 -3.7 -5.6 DUF934 domain-containing protein compare
PFLU_RS29880 -3.6 -14.8 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS29095 -3.6 -24.7 polyphosphate kinase 1 compare
PFLU_RS23585 -3.6 -9.7 GntP family permease compare
PFLU_RS22740 -3.5 -5.4 phosphoadenylyl-sulfate reductase compare
PFLU_RS26545 -3.5 -13.2 sel1 repeat family protein compare
PFLU_RS23920 -3.5 -4.2 septation protein A compare
PFLU_RS12980 -3.5 -9.9 nitrite/sulfite reductase compare
PFLU_RS18505 -3.5 -10.8 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS14550 -3.4 -9.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS22595 -3.4 -3.3 OmpA family protein compare
PFLU_RS22105 -3.3 -5.8 cysteine synthase CysM compare
PFLU_RS29885 -3.2 -12.2 LysR family transcriptional regulator compare
PFLU_RS29515 -3.2 -12.9 RidA family protein compare
PFLU_RS22095 -3.2 -20.2 GTP diphosphokinase compare
PFLU_RS28965 -3.2 -11.6 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS24330 -3.1 -6.7 phosphogluconate dehydratase compare
PFLU_RS09055 -3.1 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS23065 -3.1 -11.4 phosphate acyltransferase PlsX compare
PFLU_RS20690 -3.1 -5.1 hypothetical protein compare
PFLU_RS03970 -3.1 -10.9 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS01625 -3.1 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS01900 -3.0 -8.8 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS28645 -3.0 -14.7 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS29875 -3.0 -16.7 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS28165 -3.0 -12.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS08160 -2.9 -8.2 sugar transferase compare
PFLU_RS23305 -2.9 -11.6 arginine N-succinyltransferase compare
PFLU_RS25735 -2.8 -8.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS25750 -2.8 -7.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS28535 -2.8 -15.9 dihydroxy-acid dehydratase compare
PFLU_RS01895 -2.8 -7.4 phosphoribosyl-ATP diphosphatase compare
PFLU_RS28655 -2.7 -14.3 HAD family hydrolase compare
PFLU_RS01620 -2.7 -9.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS25640 -2.7 -12.4 ketol-acid reductoisomerase compare
PFLU_RS04470 -2.7 -12.7 histidinol dehydrogenase compare
PFLU_RS00180 -2.7 -8.7 tryptophan synthase subunit beta compare
PFLU_RS27635 -2.6 -10.3 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS23310 -2.6 -10.0 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS20520 -2.6 -10.2 colicin V production protein CvpA compare
PFLU_RS24485 -2.6 -11.0 hypothetical protein compare
PFLU_RS20515 -2.6 -3.1 amidophosphoribosyltransferase compare
PFLU_RS06055 -2.6 -1.7 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS04465 -2.5 -9.9 ATP phosphoribosyltransferase compare
PFLU_RS25755 -2.5 -4.4 pantoate--beta-alanine ligase compare
PFLU_RS00175 -2.5 -9.2 tryptophan synthase subunit alpha compare
PFLU_RS27650 -2.4 -13.7 biotin synthase BioB compare
PFLU_RS27365 -2.4 -9.7 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS23725 -2.4 -12.5 glucose-6-phosphate dehydrogenase compare
PFLU_RS01610 -2.4 -12.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28195 -2.4 -13.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS02365 -2.4 -11.9 glycosyltransferase compare
PFLU_RS06320 -2.4 -4.4 OmpH family outer membrane protein compare
PFLU_RS24025 -2.4 -10.4 quinolinate synthase NadA compare
PFLU_RS02050 -2.3 -14.0 NAD(P)-binding protein compare
PFLU_RS20540 -2.2 -10.2 phosphoribosylanthranilate isomerase compare
PFLU_RS04660 -2.2 -6.1 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS18530 -2.2 -4.8 DNA translocase FtsK compare
PFLU_RS01605 -2.2 -7.1 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS21360 -2.2 -2.1 MarR family transcriptional regulator compare
PFLU_RS24095 -2.2 -2.5 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS17545 -2.2 -1.3 DUF465 domain-containing protein compare
PFLU_RS27645 -2.2 -11.1 8-amino-7-oxononanoate synthase compare
PFLU_RS00415 -2.1 -2.1 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS08165 -2.1 -2.4 acyl carrier protein compare
PFLU_RS21495 -2.1 -3.7 TlpA family protein disulfide reductase compare
PFLU_RS04070 -2.1 -5.9 peptide chain release factor 3 compare
PFLU_RS09980 -2.1 -14.3 peptidase S41 compare
PFLU_RS02590 -2.1 -9.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS27370 -2.1 -10.1 anthranilate phosphoribosyltransferase compare
PFLU_RS01965 -2.1 -1.9 ATP-dependent protease subunit HslV compare
PFLU_RS03250 -2.0 -2.1 heavy-metal-associated domain-containing protein compare
PFLU_RS25360 -2.0 -6.7 glutamate 5-kinase compare
PFLU_RS01485 -2.0 -11.0 cellulase compare
PFLU_RS25225 -2.0 -8.5 disulfide bond formation protein B compare
PFLU_RS07225 -2.0 -12.0 L-aspartate oxidase compare
PFLU_RS30030 -2.0 -1.3 membrane protein compare
PFLU_RS19165 -1.9 -5.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS06555 -1.9 -9.8 OmpA family protein compare
PFLU_RS13540 -1.9 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS18615 -1.9 -2.7 NADH-quinone oxidoreductase subunit A compare
PFLU_RS24090 -1.9 -2.8 Holliday junction branch migration protein RuvA compare
PFLU_RS23185 -1.9 -9.9 protein-glutamate O-methyltransferase CheR compare
PFLU_RS24335 -1.8 -10.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS04325 -1.8 -12.7 ribonuclease G compare
PFLU_RS28390 -1.8 -6.9 methionine biosynthesis protein MetW compare
PFLU_RS05875 -1.8 -3.0 lysozyme compare
PFLU_RS30525 -1.8 -8.9 SDR family oxidoreductase compare
PFLU_RS20565 -1.8 -10.2 3-isopropylmalate dehydrogenase compare
PFLU_RS30165 -1.8 -8.0 ParA family protein compare
PFLU_RS07275 -1.8 -2.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS13485 -1.8 -11.7 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS19170 -1.8 -3.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS25585 -1.8 -1.2 exodeoxyribonuclease V subunit alpha compare
PFLU_RS25715 -1.8 -9.2 RNA polymerase-binding protein DksA compare
PFLU_RS21645 -1.8 -7.7 chemotaxis protein CheA compare
PFLU_RS20575 -1.7 -5.8 3-isopropylmalate dehydratase small subunit compare
PFLU_RS26595 -1.7 -1.9 lipoprotein compare
PFLU_RS27620 -1.7 -11.7 acyl-CoA dehydrogenase compare
PFLU_RS27630 -1.7 -4.9 dethiobiotin synthase compare
PFLU_RS05965 -1.7 -1.6 hypothetical protein compare
PFLU_RS04715 -1.7 -4.9 D-alanine--D-alanine ligase compare
PFLU_RS18655 -1.7 -2.3 NADH-quinone oxidoreductase subunit J compare
PFLU_RS08505 -1.7 -5.7 protease HtpX compare
PFLU_RS03555 -1.6 -1.1 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS08180 -1.6 -4.5 ketoacyl-ACP synthase III compare
PFLU_RS07785 -1.6 -9.5 VacJ family lipoprotein compare
PFLU_RS26770 -1.6 -9.4 DedA family protein compare
PFLU_RS20580 -1.6 -9.2 3-isopropylmalate dehydratase large subunit compare
PFLU_RS28650 -1.6 -5.5 RNA pyrophosphohydrolase compare
PFLU_RS30160 -1.6 -2.8 ParB/RepB/Spo0J family partition protein compare
PFLU_RS07650 -1.6 -9.2 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS24085 -1.6 -3.6 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS22070 -1.5 -4.1 phosphoribosylglycinamide formyltransferase compare
PFLU_RS02980 -1.5 -1.3 precorrin-8X methylmutase compare
PFLU_RS31530 -1.5 -1.0 transposase compare
PFLU_RS07805 -1.5 -10.3 transaldolase compare
PFLU_RS21300 -1.5 -4.7 cysteine hydrolase compare
PFLU_RS28690 -1.5 -8.4 FAD-binding oxidoreductase compare
PFLU_RS07665 -1.5 -1.0 type I DNA topoisomerase compare
PFLU_RS08490 -1.5 -0.9 DEAD/DEAH box helicase compare
PFLU_RS04430 -1.5 -6.7 ATP-binding cassette domain-containing protein compare
PFLU_RS00190 -1.5 -1.8 DUF883 domain-containing protein compare
PFLU_RS25730 -1.4 -10.2 PAS domain S-box protein compare
PFLU_RS31775 -1.4 -4.2 hypothetical protein compare
PFLU_RS06420 -1.4 -7.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
PFLU_RS03765 -1.4 -7.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS04440 -1.4 -7.7 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS27640 -1.4 -1.7 alpha/beta fold hydrolase compare
PFLU_RS21655 -1.4 -4.1 response regulator compare
PFLU_RS12635 -1.4 -1.8 conjugal transfer protein TraR compare
PFLU_RS26640 -1.4 -8.6 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS25740 -1.4 -4.7 polynucleotide adenylyltransferase PcnB compare
PFLU_RS04435 -1.4 -5.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS02045 -1.4 -10.9 glutamate synthase large subunit compare
PFLU_RS09305 -1.4 -9.1 hypothetical protein compare
PFLU_RS24765 -1.4 -10.0 2-isopropylmalate synthase compare
PFLU_RS03610 -1.3 -5.1 redox-regulated ATPase YchF compare
PFLU_RS28320 -1.3 -1.8 glutathione synthase compare
PFLU_RS20765 -1.3 -1.5 hypothetical protein compare
PFLU_RS04650 -1.3 -9.9 ABC transporter substrate-binding protein compare
PFLU_RS31440 -1.3 -1.5 hypothetical protein compare
PFLU_RS26735 -1.3 -7.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS11505 -1.3 -1.7 ABC transporter substrate-binding protein compare
PFLU_RS07215 -1.3 -4.5 hypothetical protein compare
PFLU_RS30520 -1.3 -4.1 ketoacyl-ACP synthase III compare
PFLU_RS20660 -1.3 -6.6 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS13050 -1.3 -3.0 VWA domain-containing protein compare
PFLU_RS10045 -1.3 -2.1 hypothetical protein compare
PFLU_RS02975 -1.3 -5.4 precorrin-3B synthase compare
PFLU_RS30530 -1.3 -4.5 acetyltransferase compare
PFLU_RS23475 -1.3 -3.0 peptidase M4 compare
PFLU_RS13010 -1.3 -3.8 Fe-S biogenesis protein NfuA compare
PFLU_RS26565 -1.3 -1.8 rRNA maturation RNase YbeY compare
PFLU_RS15990 -1.2 -1.5 SDR family oxidoreductase compare
PFLU_RS18005 -1.2 -2.1 acyl-CoA/acyl-ACP dehydrogenase compare
PFLU_RS07695 -1.2 -2.2 beta-N-acetylhexosaminidase compare
PFLU_RS29550 -1.2 -5.9 ATP-dependent DNA helicase RecG compare
PFLU_RS19550 -1.2 -1.0 ABC transporter ATP-binding protein compare
PFLU_RS13035 -1.2 -2.6 cobalamin biosynthesis protein CobW compare
PFLU_RS29275 -1.2 -4.4 DUF484 family protein compare
PFLU_RS10595 -1.2 -2.3 hypothetical protein compare
PFLU_RS28725 -1.2 -7.3 DUF2059 domain-containing protein compare
PFLU_RS02460 -1.2 -7.8 alpha/beta fold hydrolase compare
PFLU_RS15410 -1.2 -2.1 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS29280 -1.2 -5.7 tyrosine recombinase XerC compare
PFLU_RS04835 -1.2 -1.0 hypothetical protein compare
PFLU_RS16300 -1.2 -3.1 hypothetical protein compare
PFLU_RS25920 -1.2 -2.2 outer membrane protein assembly factor BamE compare
PFLU_RS03770 -1.2 -7.0 sulfate adenylyltransferase subunit CysN compare
PFLU_RS04220 -1.2 -5.8 FadR family transcriptional regulator compare
PFLU_RS05250 -1.2 -3.5 elongation factor 4 compare
PFLU_RS15275 -1.2 -1.9 hypothetical protein compare
PFLU_RS28315 -1.2 -1.1 response regulator compare
PFLU_RS08370 -1.2 -2.7 hypothetical protein compare
PFLU_RS00530 -1.2 -2.2 DUF2388 domain-containing protein compare
PFLU_RS13200 -1.2 -2.5 Ldh family oxidoreductase compare
PFLU_RS13715 -1.1 -1.6 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS27910 -1.1 -1.4 helix-turn-helix transcriptional regulator compare
PFLU_RS14420 -1.1 -1.7 chemotactic transduction protein ChpE compare
PFLU_RS20510 -1.1 -7.7 O-succinylhomoserine sulfhydrylase compare
PFLU_RS24255 -1.1 -6.1 pyruvate kinase compare
PFLU_RS26905 -1.1 -6.0 transcriptional regulator NrdR compare
PFLU_RS04445 -1.1 -4.7 ABC transporter substrate-binding protein compare
PFLU_RS15310 -1.1 -1.6 YgdI/YgdR family lipoprotein compare
PFLU_RS24560 -1.1 -5.2 site-specific tyrosine recombinase XerD compare
PFLU_RS12915 -1.1 -2.4 methyltransferase domain-containing protein compare
PFLU_RS31310 -1.1 -1.7 phage tail protein compare
PFLU_RS28080 -1.1 -2.4 hypothetical protein compare
PFLU_RS13350 -1.1 -1.7 ParD-like family protein compare
PFLU_RS19175 -1.1 -4.7 trigger factor compare
PFLU_RS21615 -1.1 -5.0 chemotaxis protein CheW compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in pH experiments

For pH D-Glucose across organisms