Experiment set4IT036 for Methanococcus maripaludis JJ

Compare to:

control, 1x iron with casamino acids and vitamins, H2 media

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00570 -5.6 -2.6 ribonuclease P compare
MMJJ_RS05450 -5.5 -19.1 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS04200 -5.5 -5.3 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS02045 -5.3 -4.0 molybdenum cofactor guanylyltransferase compare
MMJJ_RS00275 -5.1 -3.1 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06725 -5.0 -12.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS06625 -4.8 -2.6 pyruvate synthase subunit PorB compare
MMJJ_RS01750 -4.8 -3.2 ferrous iron transport protein A compare
MMJJ_RS03580 -4.8 -3.3 TIGR00303 family protein compare
MMJJ_RS05445 -4.7 -2.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS06510 -4.7 -3.1 LL-diaminopimelate aminotransferase compare
MMJJ_RS00600 -4.7 -4.0 hydroxymethylbilane synthase compare
MMJJ_RS07720 -4.6 -2.4 UPF0058 family protein compare
MMJJ_RS07360 -4.6 -2.2 TIGR00269 family protein compare
MMJJ_RS01600 -4.6 -3.2 radical SAM protein compare
MMJJ_RS06875 -4.6 -3.8 hypothetical protein compare
MMJJ_RS06600 -4.6 -2.7 DUF555 domain-containing protein compare
MMJJ_RS03270 -4.5 -3.1 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS04995 -4.5 -6.2 Tfx family DNA-binding protein compare
MMJJ_RS06390 -4.5 -2.4 NADPH-dependent F420 reductase compare
MMJJ_RS06750 -4.5 -2.7 homoaconitase large subunit compare
MMJJ_RS03110 -4.5 -4.3 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS03615 -4.5 -4.2 cobalt-precorrin-8 methylmutase compare
MMJJ_RS03760 -4.5 -4.3 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS04485 -4.4 -9.8 riboflavin synthase compare
MMJJ_RS04475 -4.4 -5.2 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS06155 -4.4 -6.0 phosphatidylglycerophosphatase A compare
MMJJ_RS06805 -4.4 -3.6 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS08575 -4.4 -5.3 hypothetical protein compare
MMJJ_RS03005 -4.4 -3.0 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS07470 -4.4 -2.3 50S ribosome-binding GTPase compare
MMJJ_RS03670 -4.3 -5.1 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS00450 -4.3 -2.3 DUF126 domain-containing protein compare
MMJJ_RS07380 -4.3 -10.6 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS01870 -4.2 -2.5 methanogenesis marker 15 protein compare
MMJJ_RS03840 -4.2 -2.9 DHH family phosphoesterase compare
MMJJ_RS02920 -4.2 -3.1 30S ribosomal protein S27ae compare
MMJJ_RS00645 -4.2 -14.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS01935 -4.2 -5.7 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS03095 -4.2 -2.7 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS04050 -4.1 -2.6 dihydroneopterin aldolase family protein compare
MMJJ_RS07410 -4.1 -4.9 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS02275 -4.1 -6.9 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06930 -4.1 -3.6 type II methionyl aminopeptidase compare
MMJJ_RS06225 -4.1 -2.5 adenosylmethionine decarboxylase compare
MMJJ_RS07705 -4.0 -3.9 GTP-binding protein EngB compare
MMJJ_RS06840 -4.0 -2.8 nickel-dependent hydrogenase large subunit compare
MMJJ_RS00580 -4.0 -2.5 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS09175 -4.0 -1.5 anthranilate synthase component I compare
MMJJ_RS05995 -4.0 -2.9 ATP-binding cassette domain-containing protein compare
MMJJ_RS08095 -3.9 -4.6 cobyric acid synthase CobQ compare
MMJJ_RS08155 -3.9 -4.6 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS09190 -3.9 -2.6 tryptophan synthase subunit beta compare
MMJJ_RS00210 -3.9 -3.2 DUF530 family protein compare
MMJJ_RS06040 -3.9 -5.1 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS00370 -3.8 -2.1 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS05810 -3.8 -7.7 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS06240 -3.8 -3.8 dihydropteroate synthase-like protein compare
MMJJ_RS07980 -3.8 -15.6 biotin synthase BioB compare
MMJJ_RS06220 -3.8 -6.2 polyamine aminopropyltransferase compare
MMJJ_RS05620 -3.8 -3.7 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS03820 -3.8 -5.1 hydrogenase formation protein HypD compare
MMJJ_RS08020 -3.7 -10.9 nucleotidyltransferase domain-containing protein compare
MMJJ_RS05720 -3.7 -2.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS03875 -3.7 -4.7 CBS domain-containing protein compare
MMJJ_RS02090 -3.7 -7.1 tyramine--L-glutamate ligase compare
MMJJ_RS06260 -3.7 -8.1 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS06695 -3.7 -4.0 amidohydrolase compare
MMJJ_RS09375 -3.7 -2.2 hypothetical protein compare
MMJJ_RS04685 -3.7 -10.5 carbamoyltransferase HypF compare
MMJJ_RS06485 -3.7 -3.5 phosphoglycerate kinase compare
MMJJ_RS07785 -3.6 -3.5 fumarate reductase subunit A compare
MMJJ_RS03060 -3.6 -4.4 methanogenesis marker 7 protein compare
MMJJ_RS08080 -3.6 -9.9 TIGR00300 family protein compare
MMJJ_RS08855 -3.6 -5.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS05330 -3.5 -2.4 DNA polymerase II large subunit compare
MMJJ_RS04730 -3.5 -3.4 tyrosine decarboxylase MfnA compare
MMJJ_RS04800 -3.5 -7.7 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS05650 -3.5 -4.0 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS05260 -3.5 -7.9 ATP-grasp domain-containing protein compare
MMJJ_RS05930 -3.4 -2.7 cell division protein SepF compare
MMJJ_RS02055 -3.4 -13.9 GTP 3',8-cyclase MoaA compare
MMJJ_RS03190 -3.4 -3.3 phosphopyruvate hydratase compare
MMJJ_RS07350 -3.4 -3.7 4Fe-4S binding protein compare
MMJJ_RS04520 -3.4 -8.3 coenzyme F430 synthase compare
MMJJ_RS00560 -3.4 -4.7 homoisocitrate dehydrogenase compare
MMJJ_RS05575 -3.4 -4.5 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS03170 -3.3 -9.7 DUF5612 domain-containing protein compare
MMJJ_RS06490 -3.3 -3.7 methanogenesis marker 2 protein compare
MMJJ_RS03785 -3.3 -3.2 hypothetical protein compare
MMJJ_RS03620 -3.3 -6.0 DUF2097 domain-containing protein compare
MMJJ_RS08250 -3.3 -8.2 hydrogenase maturation peptidase HycI compare
MMJJ_RS00270 -3.3 -4.9 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS04155 -3.3 -8.1 hypothetical protein compare
MMJJ_RS05070 -3.2 -2.6 DNA primase catalytic subunit PriS compare
MMJJ_RS05065 -3.2 -5.9 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS08320 -3.2 -3.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS06270 -3.2 -9.2 dethiobiotin synthase compare
MMJJ_RS08535 -3.2 -4.5 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS04790 -3.2 -5.5 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS04110 -3.2 -5.0 hypothetical protein compare
MMJJ_RS08055 -3.2 -6.8 methanogenesis marker 14 protein compare
MMJJ_RS08625 -3.2 -6.4 magnesium/cobalt transporter CorA compare
MMJJ_RS01350 -3.2 -7.8 sodium:proton antiporter compare
MMJJ_RS01200 -3.1 -3.0 PRC-barrel domain-containing protein compare
MMJJ_RS07275 -3.1 -3.0 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS02200 -3.1 -9.6 chorismate pyruvate-lyase family protein compare
MMJJ_RS00125 -3.1 -3.0 KEOPS complex subunit Cgi121 compare
MMJJ_RS00195 -3.1 -5.0 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS03150 -3.1 -8.1 2-phospho-L-lactate transferase compare
MMJJ_RS04565 -3.1 -4.0 sirohydrochlorin nickelochelatase compare
MMJJ_RS08035 -3.1 -5.3 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS06110 -3.1 -2.7 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS05935 -3.1 -2.6 Era-like GTP-binding protein compare
MMJJ_RS06700 -3.0 -6.7 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS05295 -3.0 -11.0 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS03055 -3.0 -3.2 hypothetical protein compare
MMJJ_RS00235 -3.0 -13.4 hypothetical protein compare
MMJJ_RS04150 -3.0 -3.2 DUF5379 domain-containing protein compare
MMJJ_RS08660 -3.0 -4.0 acetylornithine transaminase compare
MMJJ_RS05415 -2.9 -1.7 hypothetical protein compare
MMJJ_RS00205 -2.9 -6.7 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS07950 -2.9 -3.1 4Fe-4S binding protein compare
MMJJ_RS05655 -2.9 -6.4 HisA/HisF family protein compare
MMJJ_RS04700 -2.9 -6.5 deoxyhypusine synthase compare
MMJJ_RS01755 -2.8 -3.1 ferrous iron transport protein B compare
MMJJ_RS07000 -2.8 -1.9 TrkH family potassium uptake protein compare
MMJJ_RS07725 -2.8 -6.4 DNA primase DnaG compare
MMJJ_RS08850 -2.8 -2.9 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS01415 -2.8 -3.3 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS03065 -2.8 -11.2 CBS domain-containing protein compare
MMJJ_RS07245 -2.8 -5.9 amidohydrolase family protein compare
MMJJ_RS07415 -2.7 -3.1 polyprenyl diphosphate synthase compare
MMJJ_RS08000 -2.7 -11.4 HesA/MoeB/ThiF family protein compare
MMJJ_RS06010 -2.7 -6.0 hypothetical protein compare
MMJJ_RS03295 -2.7 -13.5 PHP domain-containing protein compare
MMJJ_RS06000 -2.7 -5.2 cation:proton antiporter subunit C compare
MMJJ_RS06180 -2.7 -3.3 tryptophan--tRNA ligase compare
MMJJ_RS01880 -2.7 -3.1 RlmE family RNA methyltransferase compare
MMJJ_RS00355 -2.7 -4.3 ribonuclease P protein component 4 compare
MMJJ_RS05950 -2.7 -3.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS01410 -2.7 -7.4 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS03125 -2.7 -4.5 GMC oxidoreductase compare
MMJJ_RS07375 -2.7 -11.1 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS06265 -2.7 -13.2 8-amino-7-oxononanoate synthase compare
MMJJ_RS04145 -2.6 -7.3 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS05490 -2.6 -3.5 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS01690 -2.6 -3.7 methanogenesis marker 12 protein compare
MMJJ_RS01345 -2.6 -5.0 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS03765 -2.6 -7.7 hypothetical protein compare
MMJJ_RS07155 -2.6 -8.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS03660 -2.6 -4.4 DUF447 family protein compare
MMJJ_RS06860 -2.6 -3.8 hypothetical protein compare
MMJJ_RS06835 -2.6 -12.7 4Fe-4S binding protein compare
MMJJ_RS07995 -2.6 -5.3 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS07875 -2.5 -2.2 FAD-dependent oxidoreductase compare
MMJJ_RS03200 -2.5 -2.5 uroporphyrinogen-III synthase compare
MMJJ_RS07355 -2.5 -6.4 MoaD/ThiS family protein compare
MMJJ_RS06020 -2.5 -5.3 hypothetical protein compare
MMJJ_RS08405 -2.5 -11.9 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06855 -2.5 -2.2 DUF2104 domain-containing protein compare
MMJJ_RS04980 -2.5 -3.9 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS00425 -2.5 -3.4 hypothetical protein compare
MMJJ_RS06250 -2.5 -3.1 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS05225 -2.4 -1.0 Gar1/Naf1 family protein compare
MMJJ_RS09135 -2.4 -6.1 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS06785 -2.4 -6.6 RNA ligase partner protein compare
MMJJ_RS03830 -2.4 -8.4 CBS domain-containing protein compare
MMJJ_RS04010 -2.4 -6.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS04675 -2.4 -5.0 thiamine pyrophosphate-binding protein compare
MMJJ_RS08500 -2.4 -7.6 L-sulfolactate dehydrogenase compare
MMJJ_RS08010 -2.3 -6.1 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS06375 -2.3 -3.7 UbiX family flavin prenyltransferase compare
MMJJ_RS04615 -2.3 -3.3 methanogenesis marker 3 protein compare
MMJJ_RS03800 -2.3 -11.2 aldolase compare
MMJJ_RS01860 -2.2 -11.5 tRNA guanosine(15) transglycosylase TgtA compare
MMJJ_RS03865 -2.2 -2.0 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS06380 -2.2 -4.2 signal recognition particle protein Srp54 compare
MMJJ_RS06015 -2.2 -9.6 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS07945 -2.2 -3.1 4Fe-4S binding protein compare
MMJJ_RS07455 -2.2 -7.4 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS03895 -2.2 -3.0 hydrogenase expression/formation protein HypE compare
MMJJ_RS08825 -2.2 -5.2 hypothetical protein compare
MMJJ_RS03490 -2.2 -1.9 ribonuclease VapC compare
MMJJ_RS06170 -2.2 -8.7 hypothetical protein compare
MMJJ_RS03845 -2.2 -4.0 translation initiation factor IF-2 compare
MMJJ_RS07430 -2.2 -3.8 ribonuclease VapC compare
MMJJ_RS05610 -2.2 -4.2 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS08620 -2.2 -3.8 DUF373 family protein compare
MMJJ_RS05765 -2.1 -1.3 flagellar protein E compare
MMJJ_RS06910 -2.1 -3.2 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS06255 -2.1 -6.3 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS03815 -2.1 -2.2 nascent polypeptide-associated complex protein compare
MMJJ_RS03650 -2.1 -6.6 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS00215 -2.1 -3.0 CCA tRNA nucleotidyltransferase compare
MMJJ_RS06650 -2.1 -11.2 cell division protein FtsZ compare
MMJJ_RS07160 -2.1 -14.3 M20 family metallo-hydrolase compare
MMJJ_RS05770 -2.1 -2.5 flagellar protein D compare
MMJJ_RS08795 -2.1 -2.7 phosphoglucosamine mutase compare
MMJJ_RS01810 -2.1 -2.2 methyl coenzyme M reductase system, component A2 compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in iron experiments

For iron Iron (II) chloride tetrahydrate across organisms