Experiment set4IT036 for Burkholderia phytofirmans PsJN

Compare to:

Defined media with L-Histidine

200 most important genes:

  gene name fitness t score description  
BPHYT_RS03480 -8.2 -5.6 ferritin compare
BPHYT_RS17400 -7.7 -5.3 anthranilate phosphoribosyltransferase compare
BPHYT_RS33835 -6.6 -9.0 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS14845 -6.6 -4.5 cysteine synthase compare
BPHYT_RS33865 -6.5 -8.9 tryptophan synthase alpha chain compare
BPHYT_RS33880 -6.4 -7.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS14910 -6.4 -11.5 chorismate mutase compare
BPHYT_RS33875 -6.2 -9.8 tryptophan synthase subunit alpha compare
BPHYT_RS18320 -6.1 -11.6 orotate phosphoribosyltransferase compare
BPHYT_RS14915 -6.0 -8.3 phosphoserine aminotransferase compare
BPHYT_RS33915 -5.9 -7.8 isopropylmalate isomerase compare
BPHYT_RS33900 -5.8 -12.5 3-isopropylmalate dehydrogenase compare
BPHYT_RS17890 -5.7 -3.8 shikimate kinase compare
BPHYT_RS16245 -5.6 -7.7 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS15915 -5.6 -10.8 ornithine carbamoyltransferase compare
BPHYT_RS16905 -5.5 -7.5 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS03150 -5.5 -11.6 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS16735 -5.5 -7.5 phosphogluconate dehydratase compare
BPHYT_RS01590 -5.4 -8.5 methionine biosynthesis protein MetW compare
BPHYT_RS03640 -5.4 -3.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS12985 -5.3 -3.6 amino acid acetyltransferase compare
BPHYT_RS09500 -5.2 -7.2 glucose-6-phosphate isomerase compare
BPHYT_RS06555 -5.2 -10.0 ketol-acid reductoisomerase compare
BPHYT_RS06545 -5.2 -11.5 acetolactate synthase compare
BPHYT_RS16255 -5.1 -3.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS17390 -5.1 -13.9 anthranilate synthase subunit I compare
BPHYT_RS15920 -5.1 -12.8 argininosuccinate synthase compare
BPHYT_RS04740 -5.0 -8.3 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS01595 -4.9 -10.8 homoserine O-acetyltransferase compare
BPHYT_RS04955 -4.9 -2.8 methionyl-tRNA synthetase compare
BPHYT_RS04725 -4.9 -8.9 sulfite reductase compare
BPHYT_RS08960 -4.9 -3.3 threonine synthase compare
BPHYT_RS06610 -4.9 -2.6 triosephosphate isomerase compare
BPHYT_RS08955 -4.8 -6.6 homoserine dehydrogenase compare
BPHYT_RS09515 -4.8 -4.7 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS14190 -4.7 -10.0 carbamoyl phosphate synthase large subunit compare
BPHYT_RS06900 -4.7 -4.6 aspartate aminotransferase compare
BPHYT_RS03535 -4.6 -5.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS17395 -4.6 -3.2 anthranilate synthase subunit II compare
BPHYT_RS14895 -4.6 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS02610 -4.5 -4.7 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS07570 -4.5 -1.8 hypothetical protein compare
BPHYT_RS16835 -4.4 -9.8 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS12465 -4.4 -6.7 inositol monophosphatase compare
BPHYT_RS16840 -4.4 -3.0 transketolase compare
BPHYT_RS13705 -4.3 -5.7 chorismate synthase compare
BPHYT_RS14855 -4.3 -3.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS17405 -4.2 -1.7 indole-3-glycerol phosphate synthase compare
BPHYT_RS06045 -4.2 -10.0 transaldolase compare
BPHYT_RS17855 -4.1 -17.5 glutamate synthase compare
BPHYT_RS33840 -4.1 -7.5 amidophosphoribosyltransferase compare
BPHYT_RS04965 -4.1 -8.2 ATP-binding protein compare
BPHYT_RS02590 -4.0 -12.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS02955 -4.0 -10.9 formyltetrahydrofolate deformylase compare
BPHYT_RS33645 -3.9 -5.2 homoserine kinase compare
BPHYT_RS12845 -3.9 -15.3 ATPase compare
BPHYT_RS04720 -3.8 -5.6 transcriptional regulator compare
BPHYT_RS17885 -3.8 -7.3 3-dehydroquinate synthase compare
BPHYT_RS06405 -3.8 -6.6 phosphoribosylamine--glycine ligase compare
BPHYT_RS08565 -3.6 -1.9 dihydroorotate dehydrogenase compare
BPHYT_RS14865 -3.3 -6.8 UDP-glucose 6-dehydrogenase compare
BPHYT_RS03725 -3.2 -2.0 serine hydroxymethyltransferase compare
BPHYT_RS04730 -3.2 -2.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS16270 -3.2 -3.9 phosphoglycerate kinase compare
BPHYT_RS05010 -3.2 -5.9 RpiR family transcriptional regulator compare
BPHYT_RS03645 -3.1 -4.4 tRNA dimethylallyltransferase compare
BPHYT_RS33920 -3.1 -9.9 type II citrate synthase compare
BPHYT_RS10100 -3.0 -5.2 dihydroxy-acid dehydratase compare
BPHYT_RS16675 -3.0 -3.5 dihydroorotase compare
BPHYT_RS04745 -3.0 -7.4 sulfate adenylyltransferase compare
BPHYT_RS18705 -2.9 -2.8 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS13220 -2.8 -8.3 phosphomethylpyrimidine synthase compare
BPHYT_RS04750 -2.6 -3.5 uroporphyrin-III C-methyltransferase compare
BPHYT_RS03400 -2.5 -2.0 ATP-dependent DNA helicase RecG compare
BPHYT_RS05960 -2.5 -10.1 endoribonuclease L-PSP compare
BPHYT_RS18340 -2.5 -3.0 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS12840 -2.4 -3.4 pyruvate dehydrogenase compare
BPHYT_RS05650 -2.4 -2.4 hypothetical protein compare
BPHYT_RS06175 -2.3 -7.3 LPS biosynthesis compare
BPHYT_RS36275 -2.3 -2.9 hypothetical protein compare
BPHYT_RS01455 -2.2 -1.2 peptide deformylase compare
BPHYT_RS17520 -2.2 -5.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS27890 -2.2 -1.7 hypothetical protein compare
BPHYT_RS03495 -2.2 -4.9 hypothetical protein compare
BPHYT_RS15570 -2.1 -7.6 NAD-dependent dehydratase compare
BPHYT_RS05020 -2.0 -6.6 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS12150 -2.0 -13.5 PII uridylyl-transferase compare
BPHYT_RS07575 -2.0 -3.9 imidazolonepropionase compare
BPHYT_RS17095 -1.9 -3.8 proline--tRNA ligase compare
BPHYT_RS05730 -1.9 -5.2 hypothetical protein compare
BPHYT_RS04920 -1.9 -3.4 aspartate 1-decarboxylase compare
BPHYT_RS14195 -1.8 -2.2 carbamoyl phosphate synthase small subunit compare
BPHYT_RS15075 -1.8 -2.1 dihydrokaempferol 4-reductase compare
BPHYT_RS07555 -1.8 -6.0 Histidine ammonia-lyase (EC 4.3.1.3) (from data) compare
BPHYT_RS05040 -1.8 -4.5 sugar ABC transporter ATPase compare
BPHYT_RS07565 -1.8 -6.3 urocanate hydratase compare
BPHYT_RS16975 -1.8 -5.6 shikimate 5-dehydrogenase compare
BPHYT_RS17380 -1.7 -6.4 ribulose-phosphate 3-epimerase compare
BPHYT_RS14900 -1.7 -2.9 prephenate dehydrogenase compare
BPHYT_RS23230 -1.7 -1.0 histidine kinase compare
BPHYT_RS05610 -1.7 -8.8 DNA-cytosine methyltransferase compare
BPHYT_RS08950 -1.7 -5.0 aminotransferase compare
BPHYT_RS08850 -1.7 -2.1 transcriptional regulator compare
BPHYT_RS06685 -1.6 -1.7 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS03900 -1.6 -1.2 phospholipid-binding protein compare
BPHYT_RS33870 -1.5 -4.1 DNA methylase N-4 compare
BPHYT_RS05030 -1.5 -3.9 sugar ABC transporter permease compare
BPHYT_RS08000 -1.5 -1.7 antibiotic biosynthesis monooxygenase compare
BPHYT_RS05025 -1.5 -4.5 sugar ABC transporter substrate-binding protein compare
BPHYT_RS33150 -1.4 -1.3 beta-lactamase compare
BPHYT_RS03570 -1.4 -5.6 heat-inducible transcription repressor HrcA compare
BPHYT_RS33610 -1.4 -1.9 DNA polymerase I compare
BPHYT_RS06550 -1.4 -2.1 acetolactate synthase compare
BPHYT_RS35480 -1.4 -2.9 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS15620 -1.4 -4.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS26955 -1.4 -1.1 succinylglutamate desuccinylase compare
BPHYT_RS30185 -1.3 -3.0 DNA-directed RNA polymerase subunit alpha compare
BPHYT_RS29485 -1.3 -2.4 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS21495 -1.3 -0.9 ABC transporter compare
BPHYT_RS02865 -1.3 -2.9 hypothetical protein compare
BPHYT_RS02710 -1.3 -1.1 hypothetical protein compare
BPHYT_RS28930 -1.3 -1.3 chromosome partitioning protein ParA compare
BPHYT_RS06990 -1.3 -2.1 membrane protein compare
BPHYT_RS17945 -1.3 -2.2 cytochrome C biogenesis protein compare
BPHYT_RS08340 -1.2 -0.4 chemotaxis protein CheY compare
BPHYT_RS02305 -1.2 -7.4 methionine synthase compare
BPHYT_RS33030 -1.2 -1.2 hypothetical protein compare
BPHYT_RS14245 -1.2 -1.6 membrane protein compare
BPHYT_RS11795 -1.2 -1.4 membrane protein compare
BPHYT_RS03110 -1.2 -3.0 MarR family transcriptional regulator compare
BPHYT_RS17445 -1.2 -4.0 GTP-binding protein YchF compare
BPHYT_RS09850 -1.2 -1.4 molybdopterin oxidoreductase compare
BPHYT_RS05035 -1.1 -2.9 sugar ABC transporter permease compare
BPHYT_RS33370 -1.1 -1.8 LysR family transcriptional regulator compare
BPHYT_RS04990 -1.1 -2.7 hypothetical protein compare
BPHYT_RS29520 -1.1 -0.9 hypothetical protein compare
BPHYT_RS31400 -1.1 -1.4 methyl-accepting chemotaxis protein compare
BPHYT_RS14920 -1.1 -0.8 hypothetical protein compare
BPHYT_RS35885 -1.1 -2.5 hypothetical protein compare
BPHYT_RS17240 -1.1 -1.3 cell division protein FtsW compare
BPHYT_RS33060 -1.1 -2.1 hypothetical protein compare
BPHYT_RS09145 -1.1 -4.6 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS05225 -1.1 -4.8 phosphoenolpyruvate carboxylase compare
BPHYT_RS36090 -1.1 -2.0 hypothetical protein compare
BPHYT_RS13645 -1.1 -8.3 threonine--tRNA ligase compare
BPHYT_RS29250 -1.1 -1.4 dihydrodipicolinate synthase compare
BPHYT_RS36220 -1.1 -1.3 hypothetical protein compare
BPHYT_RS10500 -1.1 -1.3 acetolactate synthase compare
BPHYT_RS09860 -1.1 -1.1 pilus assembly protein PilP compare
BPHYT_RS25815 -1.1 -1.3 deoxyribose-phosphate aldolase compare
BPHYT_RS22865 -1.1 -2.1 ATPase compare
BPHYT_RS16335 -1.1 -1.3 membrane protein compare
BPHYT_RS02905 -1.1 -8.6 RNA polymerase subunit sigma-54 compare
BPHYT_RS02310 -1.0 -7.4 5-methyltetrahydrofolate--homocysteine methyltransferase compare
BPHYT_RS08130 -1.0 -0.9 transposase compare
BPHYT_RS16500 -1.0 -2.9 MIP family channel protein compare
BPHYT_RS06075 -1.0 -4.8 hypothetical protein compare
BPHYT_RS09280 -1.0 -1.1 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS24315 -1.0 -1.0 phosphoribosyltransferase compare
BPHYT_RS26910 -1.0 -2.4 hypothetical protein compare
BPHYT_RS15950 -1.0 -3.7 tyrosine recombinase XerD compare
BPHYT_RS17685 -1.0 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS07585 -1.0 -1.9 N-formylglutamate deformylase (EC 3.5.1.68) (from data) compare
BPHYT_RS13605 -1.0 -1.3 tRNA-Pro compare
BPHYT_RS26415 -1.0 -2.5 glutathione S-transferase compare
BPHYT_RS02975 -1.0 -2.9 membrane protein compare
BPHYT_RS34970 -1.0 -3.4 hypothetical protein compare
BPHYT_RS22265 -1.0 -1.4 hypothetical protein compare
BPHYT_RS27485 -1.0 -1.5 NAD-dependent dehydratase compare
BPHYT_RS10095 -1.0 -2.0 integrase compare
BPHYT_RS33990 -0.9 -1.0 ATPase compare
BPHYT_RS31755 -0.9 -3.4 amino acid ABC transporter ATPase compare
BPHYT_RS10005 -0.9 -1.5 hypothetical protein compare
BPHYT_RS00815 -0.9 -1.2 hypothetical protein compare
BPHYT_RS23650 -0.9 -0.8 hypothetical protein compare
BPHYT_RS19680 -0.9 -6.7 glutamate--cysteine ligase compare
BPHYT_RS18765 -0.9 -4.1 flagellar biosynthesis protein FliS compare
BPHYT_RS33580 -0.9 -4.4 geranyltranstransferase compare
BPHYT_RS30425 -0.9 -1.1 LysR family transcriptional regulator compare
BPHYT_RS04335 -0.9 -1.5 membrane protein compare
BPHYT_RS06375 -0.9 -3.4 ribonuclease compare
BPHYT_RS16180 -0.9 -0.8 TetR family transcriptional regulator compare
BPHYT_RS22400 -0.9 -1.1 hypothetical protein compare
BPHYT_RS35500 -0.9 -2.3 major facilitator transporter compare
BPHYT_RS11075 -0.9 -1.7 membrane protein compare
BPHYT_RS16175 -0.9 -1.1 hemolysin D compare
BPHYT_RS18760 -0.9 -2.6 flagellar biosynthesis protein FliT compare
BPHYT_RS26240 -0.9 -1.6 hypothetical protein compare
BPHYT_RS29345 -0.9 -1.9 lipoyl synthase compare
BPHYT_RS27120 -0.9 -1.6 hypothetical protein compare
BPHYT_RS00940 -0.9 -1.9 transposase compare
BPHYT_RS22540 -0.9 -1.4 metal ABC transporter permease compare
BPHYT_RS14380 -0.9 -4.0 elongation factor 4 compare
BPHYT_RS28380 -0.9 -2.1 lon protease compare
BPHYT_RS27295 -0.9 -0.9 hypothetical protein compare
BPHYT_RS14735 -0.9 -0.9 hypothetical protein compare
BPHYT_RS12940 -0.9 -3.5 signal transduction histidine kinase compare
BPHYT_RS34490 -0.9 -0.8 hypothetical protein compare
BPHYT_RS33905 -0.9 -0.4 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS06410 -0.9 -1.7 transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment

For nutrient L-Histidine in Burkholderia phytofirmans PsJN

For nutrient L-Histidine across organisms