Experiment set4IT035 for Methanococcus maripaludis JJ

Compare to:

control, 1x iron with casamino acids and vitamins, H2 media

200 most important genes:

  gene name fitness t score description  
MMJJ_RS01810 -5.9 -2.4 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS05450 -5.6 -19.0 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS03615 -5.1 -3.1 cobalt-precorrin-8 methylmutase compare
MMJJ_RS02920 -5.1 -2.3 30S ribosomal protein S27ae compare
MMJJ_RS03760 -5.0 -3.5 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS06930 -4.9 -2.8 type II methionyl aminopeptidase compare
MMJJ_RS01935 -4.9 -4.7 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS05445 -4.8 -2.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS08320 -4.7 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS07720 -4.7 -2.1 UPF0058 family protein compare
MMJJ_RS06725 -4.7 -13.7 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS02200 -4.7 -11.2 chorismate pyruvate-lyase family protein compare
MMJJ_RS01600 -4.6 -2.8 radical SAM protein compare
MMJJ_RS04485 -4.6 -10.0 riboflavin synthase compare
MMJJ_RS05810 -4.6 -5.5 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS03060 -4.6 -3.8 methanogenesis marker 7 protein compare
MMJJ_RS02275 -4.6 -6.2 nucleotidyltransferase domain-containing protein compare
MMJJ_RS00560 -4.5 -4.3 homoisocitrate dehydrogenase compare
MMJJ_RS08625 -4.4 -4.3 magnesium/cobalt transporter CorA compare
MMJJ_RS04730 -4.4 -2.7 tyrosine decarboxylase MfnA compare
MMJJ_RS08035 -4.4 -9.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS00450 -4.4 -2.0 DUF126 domain-containing protein compare
MMJJ_RS03580 -4.3 -3.8 TIGR00303 family protein compare
MMJJ_RS04200 -4.3 -7.5 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS06240 -4.3 -3.3 dihydropteroate synthase-like protein compare
MMJJ_RS08535 -4.2 -4.5 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS07950 -4.2 -3.5 4Fe-4S binding protein compare
MMJJ_RS03670 -4.2 -5.7 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS06695 -4.2 -3.5 amidohydrolase compare
MMJJ_RS07000 -4.2 -1.9 TrkH family potassium uptake protein compare
MMJJ_RS09135 -4.2 -11.2 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS04685 -4.2 -9.2 carbamoyltransferase HypF compare
MMJJ_RS04050 -4.1 -2.1 dihydroneopterin aldolase family protein compare
MMJJ_RS05930 -4.1 -2.1 cell division protein SepF compare
MMJJ_RS00600 -4.1 -3.7 hydroxymethylbilane synthase compare
MMJJ_RS03840 -4.0 -3.9 DHH family phosphoesterase compare
MMJJ_RS08155 -4.0 -4.7 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS05995 -4.0 -2.6 ATP-binding cassette domain-containing protein compare
MMJJ_RS09175 -4.0 -1.3 anthranilate synthase component I compare
MMJJ_RS00355 -4.0 -3.4 ribonuclease P protein component 4 compare
MMJJ_RS03110 -4.0 -4.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS05620 -4.0 -2.8 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS00645 -4.0 -14.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS03820 -4.0 -4.7 hydrogenase formation protein HypD compare
MMJJ_RS08080 -3.9 -11.8 TIGR00300 family protein compare
MMJJ_RS04155 -3.9 -8.3 hypothetical protein compare
MMJJ_RS00205 -3.9 -6.5 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS04995 -3.9 -6.9 Tfx family DNA-binding protein compare
MMJJ_RS05490 -3.9 -2.5 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS03055 -3.9 -3.5 hypothetical protein compare
MMJJ_RS03150 -3.9 -6.9 2-phospho-L-lactate transferase compare
MMJJ_RS00235 -3.8 -15.2 hypothetical protein compare
MMJJ_RS05935 -3.8 -2.9 Era-like GTP-binding protein compare
MMJJ_RS08095 -3.8 -5.1 cobyric acid synthase CobQ compare
MMJJ_RS05260 -3.8 -8.0 ATP-grasp domain-containing protein compare
MMJJ_RS06490 -3.8 -3.2 methanogenesis marker 2 protein compare
MMJJ_RS05720 -3.8 -2.3 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS09375 -3.8 -2.0 hypothetical protein compare
MMJJ_RS08855 -3.7 -4.6 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS02045 -3.7 -3.2 molybdenum cofactor guanylyltransferase compare
MMJJ_RS06805 -3.7 -3.4 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS01750 -3.7 -3.3 ferrous iron transport protein A compare
MMJJ_RS05070 -3.7 -2.4 DNA primase catalytic subunit PriS compare
MMJJ_RS06840 -3.7 -3.6 nickel-dependent hydrogenase large subunit compare
MMJJ_RS07980 -3.7 -14.5 biotin synthase BioB compare
MMJJ_RS03865 -3.6 -1.4 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS06510 -3.6 -3.4 LL-diaminopimelate aminotransferase compare
MMJJ_RS06860 -3.6 -4.7 hypothetical protein compare
MMJJ_RS01880 -3.6 -3.4 RlmE family RNA methyltransferase compare
MMJJ_RS07380 -3.6 -10.1 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS03095 -3.6 -2.8 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS03490 -3.6 -3.1 ribonuclease VapC compare
MMJJ_RS05225 -3.6 -1.1 Gar1/Naf1 family protein compare
MMJJ_RS05650 -3.6 -3.6 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS05330 -3.6 -2.1 DNA polymerase II large subunit compare
MMJJ_RS00275 -3.5 -2.7 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS04520 -3.5 -7.0 coenzyme F430 synthase compare
MMJJ_RS04790 -3.5 -5.0 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS04675 -3.5 -7.8 thiamine pyrophosphate-binding protein compare
MMJJ_RS04475 -3.5 -4.2 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS08055 -3.5 -8.3 methanogenesis marker 14 protein compare
MMJJ_RS05950 -3.5 -3.6 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS03170 -3.5 -8.6 DUF5612 domain-containing protein compare
MMJJ_RS08000 -3.5 -13.0 HesA/MoeB/ThiF family protein compare
MMJJ_RS01870 -3.5 -2.4 methanogenesis marker 15 protein compare
MMJJ_RS03895 -3.4 -4.1 hydrogenase expression/formation protein HypE compare
MMJJ_RS04970 -3.4 -2.1 DUF655 domain-containing protein compare
MMJJ_RS08020 -3.4 -10.2 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06880 -3.4 -1.9 EhaG family protein compare
MMJJ_RS06040 -3.4 -3.7 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS00210 -3.4 -2.7 DUF530 family protein compare
MMJJ_RS06270 -3.4 -8.2 dethiobiotin synthase compare
MMJJ_RS06225 -3.4 -2.3 adenosylmethionine decarboxylase compare
MMJJ_RS08250 -3.4 -8.9 hydrogenase maturation peptidase HycI compare
MMJJ_RS04800 -3.3 -7.6 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS07705 -3.3 -4.4 GTP-binding protein EngB compare
MMJJ_RS08870 -3.3 -1.3 2-isopropylmalate synthase compare
MMJJ_RS04150 -3.3 -3.1 DUF5379 domain-containing protein compare
MMJJ_RS06625 -3.3 -2.3 pyruvate synthase subunit PorB compare
MMJJ_RS01755 -3.3 -2.7 ferrous iron transport protein B compare
MMJJ_RS06750 -3.3 -2.2 homoaconitase large subunit compare
MMJJ_RS03005 -3.3 -4.9 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS06260 -3.3 -8.0 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS03190 -3.2 -2.9 phosphopyruvate hydratase compare
MMJJ_RS06255 -3.2 -6.8 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS02055 -3.2 -11.6 GTP 3',8-cyclase MoaA compare
MMJJ_RS06760 -3.2 -5.7 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS07995 -3.2 -5.9 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS00270 -3.2 -3.9 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS07785 -3.2 -3.0 fumarate reductase subunit A compare
MMJJ_RS06600 -3.2 -2.1 DUF555 domain-containing protein compare
MMJJ_RS01350 -3.2 -8.2 sodium:proton antiporter compare
MMJJ_RS08850 -3.1 -2.6 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS07725 -3.1 -7.3 DNA primase DnaG compare
MMJJ_RS06220 -3.1 -5.5 polyamine aminopropyltransferase compare
MMJJ_RS04110 -3.1 -7.2 hypothetical protein compare
MMJJ_RS08575 -3.1 -4.9 hypothetical protein compare
MMJJ_RS06175 -3.1 -2.4 DUF1743 domain-containing protein compare
MMJJ_RS09190 -3.1 -2.3 tryptophan synthase subunit beta compare
MMJJ_RS06485 -3.1 -3.3 phosphoglycerate kinase compare
MMJJ_RS03270 -3.0 -2.6 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS06180 -3.0 -3.0 tryptophan--tRNA ligase compare
MMJJ_RS03650 -3.0 -8.1 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS06155 -3.0 -6.0 phosphatidylglycerophosphatase A compare
MMJJ_RS05415 -3.0 -1.5 hypothetical protein compare
MMJJ_RS03295 -3.0 -12.6 PHP domain-containing protein compare
MMJJ_RS01360 -3.0 -2.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS06010 -3.0 -6.8 hypothetical protein compare
MMJJ_RS06855 -3.0 -2.0 DUF2104 domain-containing protein compare
MMJJ_RS07155 -2.9 -10.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS05295 -2.9 -10.3 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS07410 -2.9 -5.3 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS00570 -2.9 -1.8 ribonuclease P compare
MMJJ_RS01415 -2.9 -2.8 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS01200 -2.9 -3.1 PRC-barrel domain-containing protein compare
MMJJ_RS03065 -2.9 -12.9 CBS domain-containing protein compare
MMJJ_RS00475 -2.9 -2.7 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS00195 -2.9 -4.3 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS06250 -2.9 -2.7 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS02090 -2.8 -4.4 tyramine--L-glutamate ligase compare
MMJJ_RS05575 -2.8 -3.7 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS08010 -2.8 -7.3 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS04655 -2.8 -6.4 FAD-dependent oxidoreductase compare
MMJJ_RS06265 -2.8 -12.9 8-amino-7-oxononanoate synthase compare
MMJJ_RS03620 -2.8 -5.7 DUF2097 domain-containing protein compare
MMJJ_RS07375 -2.8 -7.8 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS08340 -2.8 -5.7 archaeoflavoprotein AfpA compare
MMJJ_RS03765 -2.8 -8.4 hypothetical protein compare
MMJJ_RS03125 -2.8 -4.9 GMC oxidoreductase compare
MMJJ_RS03815 -2.7 -2.3 nascent polypeptide-associated complex protein compare
MMJJ_RS07275 -2.7 -3.1 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS06020 -2.7 -6.5 hypothetical protein compare
MMJJ_RS06700 -2.7 -4.8 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS06200 -2.7 -2.4 phosphoglycerate dehydrogenase compare
MMJJ_RS01345 -2.7 -5.7 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS07350 -2.7 -3.4 4Fe-4S binding protein compare
MMJJ_RS04650 -2.7 -6.8 nitrogenase iron protein compare
MMJJ_RS06375 -2.7 -4.8 UbiX family flavin prenyltransferase compare
MMJJ_RS05655 -2.6 -5.2 HisA/HisF family protein compare
MMJJ_RS00370 -2.6 -1.9 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS05610 -2.6 -4.8 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS07875 -2.6 -1.9 FAD-dependent oxidoreductase compare
MMJJ_RS04700 -2.6 -6.4 deoxyhypusine synthase compare
MMJJ_RS04975 -2.6 -2.1 glycosyltransferase family 4 protein compare
MMJJ_RS04010 -2.6 -6.5 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS03965 -2.5 -1.8 DNA-directed RNA polymerase subunit L compare
MMJJ_RS07455 -2.5 -7.1 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS03200 -2.5 -2.1 uroporphyrinogen-III synthase compare
MMJJ_RS06910 -2.5 -3.5 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS04595 -2.5 -4.1 hypothetical protein compare
MMJJ_RS08840 -2.5 -4.5 calcium/sodium antiporter compare
MMJJ_RS03800 -2.5 -9.5 aldolase compare
MMJJ_RS05065 -2.5 -4.7 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS00425 -2.5 -3.8 hypothetical protein compare
MMJJ_RS01820 -2.5 -4.6 MJ1244 family protein compare
MMJJ_RS07370 -2.4 -5.5 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS07245 -2.4 -4.9 amidohydrolase family protein compare
MMJJ_RS08405 -2.4 -11.1 nickel-dependent hydrogenase large subunit compare
MMJJ_RS03660 -2.4 -3.1 DUF447 family protein compare
MMJJ_RS01690 -2.4 -3.2 methanogenesis marker 12 protein compare
MMJJ_RS01410 -2.4 -7.0 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS06170 -2.4 -8.4 hypothetical protein compare
MMJJ_RS01070 -2.3 -2.9 PadR family transcriptional regulator compare
MMJJ_RS05590 -2.3 -2.2 homoserine dehydrogenase compare
MMJJ_RS00215 -2.3 -2.7 CCA tRNA nucleotidyltransferase compare
MMJJ_RS07430 -2.3 -3.8 ribonuclease VapC compare
MMJJ_RS06785 -2.3 -6.4 RNA ligase partner protein compare
MMJJ_RS06050 -2.3 -7.1 molybdopterin molybdotransferase MoeA compare
MMJJ_RS07345 -2.3 -7.3 homocysteine biosynthesis protein compare
MMJJ_RS06835 -2.3 -10.5 4Fe-4S binding protein compare
MMJJ_RS01355 -2.3 -3.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS07715 -2.3 -3.6 UbiD family decarboxylase compare
MMJJ_RS06005 -2.3 -7.9 energy conserving hydrogenase EhbF compare
MMJJ_RS06185 -2.2 -5.5 cobalamin biosynthesis protein compare
MMJJ_RS04565 -2.2 -3.2 sirohydrochlorin nickelochelatase compare
MMJJ_RS03830 -2.2 -7.8 CBS domain-containing protein compare
MMJJ_RS08470 -2.2 -2.2 ferredoxin family protein compare
MMJJ_RS07160 -2.2 -14.2 M20 family metallo-hydrolase compare
MMJJ_RS06035 -2.2 -7.2 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS04680 -2.2 -9.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in iron experiments

For iron Iron (II) chloride tetrahydrate across organisms