Experiment set4IT035 for Burkholderia phytofirmans PsJN

Compare to:

Defined media with L-Histidine

200 most important genes:

  gene name fitness t score description  
BPHYT_RS03480 -7.6 -7.4 ferritin compare
BPHYT_RS33835 -6.9 -8.2 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17395 -6.7 -2.7 anthranilate synthase subunit II compare
BPHYT_RS33865 -6.4 -9.8 tryptophan synthase alpha chain compare
BPHYT_RS13705 -6.4 -4.4 chorismate synthase compare
BPHYT_RS33900 -6.4 -11.5 3-isopropylmalate dehydrogenase compare
BPHYT_RS18320 -6.2 -11.5 orotate phosphoribosyltransferase compare
BPHYT_RS33880 -6.1 -9.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS16245 -5.9 -7.0 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS33875 -5.9 -9.1 tryptophan synthase subunit alpha compare
BPHYT_RS17890 -5.9 -4.0 shikimate kinase compare
BPHYT_RS04725 -5.8 -7.2 sulfite reductase compare
BPHYT_RS17400 -5.8 -9.3 anthranilate phosphoribosyltransferase compare
BPHYT_RS14915 -5.7 -9.5 phosphoserine aminotransferase compare
BPHYT_RS14845 -5.7 -5.5 cysteine synthase compare
BPHYT_RS14190 -5.5 -9.2 carbamoyl phosphate synthase large subunit compare
BPHYT_RS04740 -5.4 -8.3 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS12985 -5.4 -3.7 amino acid acetyltransferase compare
BPHYT_RS15915 -5.4 -12.0 ornithine carbamoyltransferase compare
BPHYT_RS02610 -5.4 -5.8 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS16735 -5.2 -8.7 phosphogluconate dehydratase compare
BPHYT_RS16255 -5.2 -3.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS03150 -5.1 -11.6 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS15920 -5.1 -11.2 argininosuccinate synthase compare
BPHYT_RS16905 -5.1 -7.7 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS04955 -5.1 -2.9 methionyl-tRNA synthetase compare
BPHYT_RS08955 -5.0 -5.9 homoserine dehydrogenase compare
BPHYT_RS33840 -5.0 -10.1 amidophosphoribosyltransferase compare
BPHYT_RS08960 -5.0 -3.4 threonine synthase compare
BPHYT_RS14910 -5.0 -11.1 chorismate mutase compare
BPHYT_RS33645 -5.0 -5.0 homoserine kinase compare
BPHYT_RS06610 -5.0 -2.7 triosephosphate isomerase compare
BPHYT_RS33915 -4.9 -10.2 isopropylmalate isomerase compare
BPHYT_RS09515 -4.9 -5.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS17390 -4.8 -14.0 anthranilate synthase subunit I compare
BPHYT_RS14895 -4.7 -4.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS04965 -4.6 -11.4 ATP-binding protein compare
BPHYT_RS17885 -4.5 -9.1 3-dehydroquinate synthase compare
BPHYT_RS09500 -4.5 -7.4 glucose-6-phosphate isomerase compare
BPHYT_RS06545 -4.5 -12.1 acetolactate synthase compare
BPHYT_RS06555 -4.4 -9.9 ketol-acid reductoisomerase compare
BPHYT_RS01595 -4.4 -8.9 homoserine O-acetyltransferase compare
BPHYT_RS02590 -4.4 -10.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS16835 -4.4 -6.1 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS16675 -4.4 -3.0 dihydroorotase compare
BPHYT_RS17405 -4.3 -1.7 indole-3-glycerol phosphate synthase compare
BPHYT_RS06900 -4.2 -8.4 aspartate aminotransferase compare
BPHYT_RS06405 -4.1 -7.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS16270 -4.0 -4.1 phosphoglycerate kinase compare
BPHYT_RS01590 -3.9 -5.4 methionine biosynthesis protein MetW compare
BPHYT_RS12840 -3.9 -7.5 pyruvate dehydrogenase compare
BPHYT_RS17855 -3.9 -16.2 glutamate synthase compare
BPHYT_RS14195 -3.8 -4.3 carbamoyl phosphate synthase small subunit compare
BPHYT_RS08565 -3.7 -1.9 dihydroorotate dehydrogenase compare
BPHYT_RS12845 -3.7 -17.1 ATPase compare
BPHYT_RS04720 -3.6 -5.4 transcriptional regulator compare
BPHYT_RS02955 -3.6 -8.3 formyltetrahydrofolate deformylase compare
BPHYT_RS16840 -3.6 -4.6 transketolase compare
BPHYT_RS06045 -3.5 -7.1 transaldolase compare
BPHYT_RS04745 -3.5 -5.7 sulfate adenylyltransferase compare
BPHYT_RS03640 -3.5 -5.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS10100 -3.5 -6.6 dihydroxy-acid dehydratase compare
BPHYT_RS03535 -3.4 -9.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS33905 -3.1 -2.3 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS33920 -3.0 -12.4 type II citrate synthase compare
BPHYT_RS12465 -3.0 -6.5 inositol monophosphatase compare
BPHYT_RS04730 -3.0 -2.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS05010 -2.9 -5.5 RpiR family transcriptional regulator compare
BPHYT_RS05960 -2.9 -7.0 endoribonuclease L-PSP compare
BPHYT_RS03645 -2.8 -4.0 tRNA dimethylallyltransferase compare
BPHYT_RS03725 -2.7 -2.6 serine hydroxymethyltransferase compare
BPHYT_RS07570 -2.7 -1.8 hypothetical protein compare
BPHYT_RS14855 -2.6 -2.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS14865 -2.5 -6.2 UDP-glucose 6-dehydrogenase compare
BPHYT_RS13220 -2.5 -5.4 phosphomethylpyrimidine synthase compare
BPHYT_RS06175 -2.3 -4.6 LPS biosynthesis compare
BPHYT_RS06685 -2.3 -4.2 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS18340 -2.3 -3.0 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS23230 -2.3 -1.3 histidine kinase compare
BPHYT_RS15075 -2.2 -3.4 dihydrokaempferol 4-reductase compare
BPHYT_RS17520 -2.2 -7.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS36275 -2.1 -2.6 hypothetical protein compare
BPHYT_RS07565 -2.0 -5.8 urocanate hydratase compare
BPHYT_RS05020 -1.9 -6.8 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS06350 -1.9 -2.7 chemotaxis protein CheY compare
BPHYT_RS02865 -1.9 -4.1 hypothetical protein compare
BPHYT_RS07575 -1.9 -4.9 imidazolonepropionase compare
BPHYT_RS14900 -1.8 -3.2 prephenate dehydrogenase compare
BPHYT_RS08950 -1.8 -5.4 aminotransferase compare
BPHYT_RS33850 -1.8 -2.8 sporulation protein compare
BPHYT_RS12150 -1.8 -11.9 PII uridylyl-transferase compare
BPHYT_RS03495 -1.7 -6.5 hypothetical protein compare
BPHYT_RS08850 -1.7 -2.6 transcriptional regulator compare
BPHYT_RS05040 -1.7 -6.3 sugar ABC transporter ATPase compare
BPHYT_RS12990 -1.7 -3.1 iron transporter compare
BPHYT_RS17380 -1.7 -7.9 ribulose-phosphate 3-epimerase compare
BPHYT_RS05025 -1.7 -5.0 sugar ABC transporter substrate-binding protein compare
BPHYT_RS05610 -1.7 -8.2 DNA-cytosine methyltransferase compare
BPHYT_RS10095 -1.6 -3.2 integrase compare
BPHYT_RS05035 -1.5 -5.0 sugar ABC transporter permease compare
BPHYT_RS33870 -1.5 -4.0 DNA methylase N-4 compare
BPHYT_RS15570 -1.4 -6.6 NAD-dependent dehydratase compare
BPHYT_RS07085 -1.4 -1.9 LysR family transcriptional regulator compare
BPHYT_RS17240 -1.4 -1.7 cell division protein FtsW compare
BPHYT_RS01505 -1.4 -1.4 7-cyano-7-deazaguanine reductase compare
BPHYT_RS07585 -1.4 -2.2 N-formylglutamate deformylase (EC 3.5.1.68) (from data) compare
BPHYT_RS09850 -1.4 -1.9 molybdopterin oxidoreductase compare
BPHYT_RS33580 -1.4 -5.3 geranyltranstransferase compare
BPHYT_RS17095 -1.4 -3.7 proline--tRNA ligase compare
BPHYT_RS09145 -1.4 -5.9 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS28860 -1.3 -1.5 haloacid dehalogenase compare
BPHYT_RS26080 -1.3 -1.5 ABC transporter ATPase compare
BPHYT_RS04820 -1.3 -4.6 LysR family transcriptional regulator compare
BPHYT_RS04750 -1.3 -1.4 uroporphyrin-III C-methyltransferase compare
BPHYT_RS18705 -1.3 -1.3 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS08415 -1.3 -1.6 hypothetical protein compare
BPHYT_RS07580 -1.3 -2.2 N-formimino-L-glutamate deiminase compare
BPHYT_RS26975 -1.3 -1.5 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS06550 -1.3 -2.8 acetolactate synthase compare
BPHYT_RS08410 -1.2 -1.4 dehydrogenase compare
BPHYT_RS28930 -1.2 -1.3 chromosome partitioning protein ParA compare
BPHYT_RS16975 -1.2 -3.7 shikimate 5-dehydrogenase compare
BPHYT_RS18760 -1.2 -2.8 flagellar biosynthesis protein FliT compare
BPHYT_RS09690 -1.2 -1.3 phosphate starvation-inducible protein PsiF compare
BPHYT_RS21485 -1.2 -1.4 hypothetical protein compare
BPHYT_RS05730 -1.2 -2.4 hypothetical protein compare
BPHYT_RS06975 -1.2 -2.1 glutamate racemase compare
BPHYT_RS14920 -1.2 -0.9 hypothetical protein compare
BPHYT_RS19680 -1.2 -8.6 glutamate--cysteine ligase compare
BPHYT_RS14505 -1.2 -1.9 membrane protein compare
BPHYT_RS03570 -1.2 -5.9 heat-inducible transcription repressor HrcA compare
BPHYT_RS06075 -1.2 -5.8 hypothetical protein compare
BPHYT_RS13390 -1.2 -1.1 IclR family transcriptional regulator compare
BPHYT_RS25575 -1.1 -1.3 alpha/beta hydrolase compare
BPHYT_RS16340 -1.1 -5.6 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS13605 -1.1 -1.5 tRNA-Pro compare
BPHYT_RS35885 -1.1 -2.8 hypothetical protein compare
BPHYT_RS32880 -1.1 -1.3 alanine acetyltransferase compare
BPHYT_RS06375 -1.1 -4.1 ribonuclease compare
BPHYT_RS16345 -1.1 -4.8 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS04920 -1.1 -2.3 aspartate 1-decarboxylase compare
BPHYT_RS24975 -1.1 -1.4 RNA polymerase sigma24 factor compare
BPHYT_RS26280 -1.1 -2.5 hypothetical protein compare
BPHYT_RS29905 -1.1 -2.0 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS35205 -1.1 -2.5 hypothetical protein compare
BPHYT_RS34745 -1.1 -1.3 hypothetical protein compare
BPHYT_RS14550 -1.0 -1.1 tRNA-Asn compare
BPHYT_RS12925 -1.0 -0.9 exodeoxyribonuclease III compare
BPHYT_RS05225 -1.0 -5.2 phosphoenolpyruvate carboxylase compare
BPHYT_RS17675 -1.0 -2.1 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS15710 -1.0 -1.9 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS14585 -1.0 -2.0 hypothetical protein compare
BPHYT_RS03215 -1.0 -2.0 TetR family transcriptional regulator compare
BPHYT_RS08335 -1.0 -1.4 hypothetical protein compare
BPHYT_RS17945 -1.0 -2.0 cytochrome C biogenesis protein compare
BPHYT_RS02905 -1.0 -8.2 RNA polymerase subunit sigma-54 compare
BPHYT_RS12725 -1.0 -7.2 regulator compare
BPHYT_RS15620 -1.0 -3.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS10945 -1.0 -1.7 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS23825 -1.0 -3.0 hypothetical protein compare
BPHYT_RS06990 -1.0 -1.7 membrane protein compare
BPHYT_RS15950 -1.0 -5.3 tyrosine recombinase XerD compare
BPHYT_RS36435 -0.9 -1.8 hypothetical protein compare
BPHYT_RS14660 -0.9 -1.3 hypothetical protein compare
BPHYT_RS06410 -0.9 -1.5 transcriptional regulator compare
BPHYT_RS14400 -0.9 -2.7 anti-sigma factor compare
BPHYT_RS25005 -0.9 -1.3 FMN reductase compare
BPHYT_RS09070 -0.9 -3.2 recombination protein RecR compare
BPHYT_RS17685 -0.9 -5.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS23880 -0.9 -1.8 sugar ABC transporter permease compare
BPHYT_RS07760 -0.9 -1.7 diguanylate phosphodiesterase compare
BPHYT_RS02650 -0.9 -1.3 membrane protein compare
BPHYT_RS02310 -0.9 -6.3 5-methyltetrahydrofolate--homocysteine methyltransferase compare
BPHYT_RS09330 -0.9 -6.3 phytoene synthase compare
BPHYT_RS11170 -0.9 -1.1 hypothetical protein compare
BPHYT_RS07555 -0.9 -4.1 Histidine ammonia-lyase (EC 4.3.1.3) (from data) compare
BPHYT_RS29950 -0.9 -1.8 hypothetical protein compare
BPHYT_RS05030 -0.9 -1.8 sugar ABC transporter permease compare
BPHYT_RS30995 -0.9 -0.8 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS25450 -0.9 -1.3 membrane protein compare
BPHYT_RS25250 -0.9 -2.2 porin compare
BPHYT_RS25080 -0.9 -1.3 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS31910 -0.9 -1.7 hypothetical protein compare
BPHYT_RS05705 -0.9 -0.9 hypothetical protein compare
BPHYT_RS12940 -0.9 -2.7 signal transduction histidine kinase compare
BPHYT_RS35735 -0.9 -1.0 nitroreductase compare
BPHYT_RS13645 -0.9 -7.0 threonine--tRNA ligase compare
BPHYT_RS01660 -0.9 -2.2 hypothetical protein compare
BPHYT_RS30750 -0.9 -1.2 GntR family transcriptional regulator compare
BPHYT_RS30415 -0.9 -1.2 AraC family transcriptional regulator compare
BPHYT_RS17715 -0.9 -4.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS02305 -0.8 -4.9 methionine synthase compare
BPHYT_RS24655 -0.8 -1.9 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS29855 -0.8 -1.0 protein-tyrosine-phosphatase compare
BPHYT_RS08885 -0.8 -5.3 inorganic phosphate transporter compare
BPHYT_RS32675 -0.8 -2.0 2-methylcitrate dehydratase compare
BPHYT_RS00540 -0.8 -2.4 hypothetical protein compare
BPHYT_RS11075 -0.8 -1.7 membrane protein compare
BPHYT_RS18635 -0.8 -1.7 LamB/YcsF family protein compare
BPHYT_RS02665 -0.8 -5.8 MFS transporter compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in nutrient experiments

For nutrient L-Histidine across organisms