Experiment set4IT035 for Burkholderia phytofirmans PsJN

Compare to:

Defined media with L-Histidine

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS30490 +1.9 2.3 2-haloalkanoic acid dehalogenase compare
BPHYT_RS24925 +1.4 2.3 cytochrome O ubiquinol oxidase compare
BPHYT_RS02435 +1.3 1.4 hypothetical protein compare
BPHYT_RS25335 +1.3 1.5 hypothetical protein compare
BPHYT_RS27455 +1.3 2.5 rod shape-determining protein MreB compare
BPHYT_RS22500 +1.2 2.8 transcriptional regulator compare
BPHYT_RS02860 +1.2 1.9 membrane protein compare
BPHYT_RS28065 +1.2 1.6 hypothetical protein compare
BPHYT_RS07690 +1.1 3.6 AraC family transcriptional regulator compare
BPHYT_RS25470 +1.1 1.5 alkylhydroperoxidase compare
BPHYT_RS08340 +1.1 0.6 chemotaxis protein CheY compare
BPHYT_RS26510 +1.0 1.4 transcriptional regulator compare
BPHYT_RS01795 +1.0 6.4 histidine kinase compare
BPHYT_RS05320 +1.0 1.7 beta-lactamase compare
BPHYT_RS23445 +1.0 2.3 hexuronate transporter compare
BPHYT_RS10910 +1.0 3.0 glucosyltransferase compare
BPHYT_RS32395 +1.0 1.4 hypothetical protein compare
BPHYT_RS02725 +1.0 2.4 GntR family transcriptional regulator compare
BPHYT_RS25820 +1.0 1.7 sugar ABC transporter compare
BPHYT_RS02660 +1.0 1.4 membrane protein compare
BPHYT_RS00770 +1.0 1.3 conjugal transfer protein TraC compare
BPHYT_RS24135 +1.0 4.5 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS21495 +1.0 1.2 ABC transporter compare
BPHYT_RS18825 +0.9 3.6 flagellar biosynthesis protein FliP compare
BPHYT_RS18860 +0.9 4.1 flagellar P-ring protein FlgI compare
BPHYT_RS10875 +0.9 4.2 transporter compare
BPHYT_RS35955 +0.9 1.5 hypothetical protein compare
BPHYT_RS28885 +0.9 1.8 betaine-aldehyde dehydrogenase compare
BPHYT_RS09585 +0.9 1.5 hypothetical protein compare
BPHYT_RS18895 +0.9 4.2 flagellar basal body rod protein FlgB compare
BPHYT_RS22910 +0.9 1.2 hypothetical protein compare
BPHYT_RS10540 +0.9 1.2 secretion protein compare
BPHYT_RS19620 +0.9 1.8 general secretion pathway protein GspH compare
BPHYT_RS31260 +0.9 1.8 histidine kinase compare
BPHYT_RS06915 +0.9 2.2 hypothetical protein compare
BPHYT_RS26390 +0.8 1.0 antibiotic resistance protein compare
BPHYT_RS10400 +0.8 1.1 taurine ABC transporter permease compare
BPHYT_RS30465 +0.8 1.1 short-chain dehydrogenase compare
BPHYT_RS29710 +0.8 1.8 FAD-binding molybdopterin dehydrogenase compare
BPHYT_RS11805 +0.8 1.4 hypothetical protein compare
BPHYT_RS31020 +0.8 1.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS18890 +0.8 2.7 flagellar basal body rod protein FlgC compare
BPHYT_RS01790 +0.8 6.9 LuxR family transcriptional regulator compare
BPHYT_RS07410 +0.8 1.7 glucosamine--fructose-6-phosphate aminotransferase compare
BPHYT_RS05330 +0.8 2.2 phosphohydrolase compare
BPHYT_RS07130 +0.8 1.5 biopolymer transporter ExbD compare
BPHYT_RS14880 +0.8 2.1 integration host factor subunit beta compare
BPHYT_RS03900 +0.8 1.1 phospholipid-binding protein compare
BPHYT_RS34270 +0.8 2.9 LysR family transcriptional regulator compare
BPHYT_RS32470 +0.8 1.9 membrane protein compare
BPHYT_RS04095 +0.8 1.0 SAM-dependent methyltransferase PhcB compare
BPHYT_RS18880 +0.8 5.4 flagellar hook protein FlgE compare
BPHYT_RS09545 +0.8 2.1 peptide methionine sulfoxide reductase compare
BPHYT_RS02710 +0.8 1.2 hypothetical protein compare
BPHYT_RS20355 +0.8 2.3 ABC transporter substrate-binding protein compare
BPHYT_RS33515 +0.8 5.0 porin compare
BPHYT_RS09000 +0.8 1.0 competence protein ComE compare
BPHYT_RS14735 +0.8 1.2 hypothetical protein compare
BPHYT_RS24580 +0.8 1.5 hypothetical protein compare
BPHYT_RS18775 +0.8 5.4 flagellar M-ring protein FliF compare
BPHYT_RS26025 +0.8 0.8 hypothetical protein compare
BPHYT_RS18925 +0.8 5.1 RNA polymerase sigma70 compare
BPHYT_RS20185 +0.7 1.1 sugar transferase compare
BPHYT_RS15800 +0.7 2.4 GntR family transcriptional regulator compare
BPHYT_RS28300 +0.7 1.5 histone nucleoid-structuring protein H-NS compare
BPHYT_RS30130 +0.7 1.9 AraC family transcriptional regulator compare
BPHYT_RS30930 +0.7 2.3 PAS/PAC sensor signal transduction histidine kinase compare
BPHYT_RS11215 +0.7 4.9 ribose ABC transporter ATPase compare
BPHYT_RS02300 +0.7 1.3 acid shock protein compare
BPHYT_RS24055 +0.7 2.2 oxidoreductase compare
BPHYT_RS34565 +0.7 2.0 chemotaxis protein compare
BPHYT_RS28000 +0.7 1.6 permease compare
BPHYT_RS18835 +0.7 1.2 flagellar biosynthesis protein FliR compare
BPHYT_RS18795 +0.7 5.8 flagellar export protein FliJ compare
BPHYT_RS18900 +0.7 6.3 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS26820 +0.7 1.5 LysR family transcriptional regulator compare
BPHYT_RS18885 +0.7 4.0 flagellar basal body rod modification protein FlgD compare
BPHYT_RS18870 +0.7 3.8 flagellar basal body rod protein FlgG compare
BPHYT_RS25440 +0.7 1.6 alanine dehydrogenase compare
BPHYT_RS18935 +0.7 4.1 flagellar biosynthesis regulator FlhF compare
BPHYT_RS26775 +0.7 1.4 chemotaxis protein CheB compare
BPHYT_RS05235 +0.7 0.9 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS35750 +0.7 0.9 hypothetical protein compare
BPHYT_RS20905 +0.7 1.0 hypothetical protein compare
BPHYT_RS27720 +0.7 1.1 hypothetical protein compare
BPHYT_RS18875 +0.7 3.0 flagellar basal body rod protein FlgF compare
BPHYT_RS31510 +0.7 1.9 sulfonate ABC transporter substrate-binding protein compare
BPHYT_RS14250 +0.7 4.4 glycosyl transferase compare
BPHYT_RS31715 +0.7 2.7 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS14255 +0.7 5.9 ABC transporter compare
BPHYT_RS18940 +0.7 4.3 flagellar biosynthesis protein FlhA compare
BPHYT_RS18790 +0.7 4.9 ATP synthase compare
BPHYT_RS26285 +0.7 1.5 glycogen debranching protein compare
BPHYT_RS25875 +0.7 1.2 type III secretion protein compare
BPHYT_RS26570 +0.7 1.0 5'-nucleotidase compare
BPHYT_RS22330 +0.7 1.8 PhoB family transcriptional regulator compare
BPHYT_RS12480 +0.7 2.4 hypothetical protein compare
BPHYT_RS26135 +0.7 1.2 ABC transporter permease compare
BPHYT_RS10850 +0.7 0.7 LysR family transcriptional regulator compare
BPHYT_RS18780 +0.6 3.3 flagellar motor switch protein FliG compare
BPHYT_RS18810 +0.6 3.8 flagellar motor switch protein FliM compare
BPHYT_RS00295 +0.6 1.4 hypothetical protein compare
BPHYT_RS18805 +0.6 3.8 flagellar basal body protein FliL compare
BPHYT_RS25710 +0.6 1.7 hypothetical protein compare
BPHYT_RS35585 +0.6 2.5 hypothetical protein compare
BPHYT_RS09710 +0.6 3.0 undecaprenyl-phosphate glucose phosphotransferase compare
BPHYT_RS30340 +0.6 0.9 AraC family transcriptional regulator compare
BPHYT_RS18945 +0.6 4.8 flagellar biosynthesis protein FlhB compare
BPHYT_RS07320 +0.6 1.2 dihydrodipicolinate synthetase compare
BPHYT_RS13460 +0.6 1.7 chemotaxis protein compare
BPHYT_RS34430 +0.6 1.1 2-keto-4-pentenoate hydratase compare
BPHYT_RS28520 +0.6 2.1 hypothetical protein compare
BPHYT_RS26030 +0.6 1.1 cysteine hydrolase compare
BPHYT_RS10115 +0.6 1.2 hypothetical protein compare
BPHYT_RS12520 +0.6 2.0 nicotinate phosphoribosyltransferase compare
BPHYT_RS21130 +0.6 1.9 F420-dependent oxidoreductase compare
BPHYT_RS31255 +0.6 1.1 cytochrome B561 compare
BPHYT_RS10570 +0.6 1.4 LysR family transcriptional regulator compare
BPHYT_RS10265 +0.6 2.3 aminotransferase compare
BPHYT_RS11810 +0.6 0.8 LysR family transcriptional regulator compare
BPHYT_RS27355 +0.6 1.7 2-dehydropantoate 2-reductase compare
BPHYT_RS09565 +0.6 1.2 acetyl-CoA acetyltransferase compare
BPHYT_RS28625 +0.6 1.6 major facilitator transporter compare
BPHYT_RS11395 +0.6 1.4 hypothetical protein compare
BPHYT_RS11665 +0.6 1.9 ribonuclease compare
BPHYT_RS04585 +0.6 1.8 hypothetical protein compare
BPHYT_RS34275 +0.6 2.7 peptide chain release factor 3 compare
BPHYT_RS18820 +0.6 1.8 flagellar biosynthesis protein FliO compare
BPHYT_RS09600 +0.6 1.4 hypothetical protein compare
BPHYT_RS00725 +0.6 1.2 hypothetical protein compare
BPHYT_RS09580 +0.6 1.9 2-aminoadipate aminotransferase compare
BPHYT_RS03455 +0.6 1.8 paraquat-inducible protein A compare
BPHYT_RS36060 +0.6 1.3 hypothetical protein compare
BPHYT_RS06105 +0.6 1.2 hypothetical protein compare
BPHYT_RS05970 +0.6 1.6 glyoxalase compare
BPHYT_RS24525 +0.6 2.7 2-hydroxyacid dehydrogenase compare
BPHYT_RS29890 +0.6 1.9 LysR family transcriptional regulator compare
BPHYT_RS27295 +0.6 0.9 hypothetical protein compare
BPHYT_RS20830 +0.6 1.7 electron transfer flavoprotein subunit beta compare
BPHYT_RS25870 +0.6 0.7 type III secretion system ATPase compare
BPHYT_RS27370 +0.6 1.3 CoA transferase compare
BPHYT_RS18830 +0.6 3.4 flagellar biosynthesis protein FliQ compare
BPHYT_RS22400 +0.6 1.0 hypothetical protein compare
BPHYT_RS18855 +0.6 3.8 flagellar rod assembly protein FlgJ compare
BPHYT_RS28480 +0.6 1.2 hydroxyglutarate oxidase compare
BPHYT_RS27155 +0.6 1.1 peroxiredoxin compare
BPHYT_RS07450 +0.6 1.4 histidine kinase compare
BPHYT_RS10125 +0.6 1.2 hypothetical protein compare
BPHYT_RS35245 +0.5 1.7 hypothetical protein compare
BPHYT_RS23200 +0.5 2.3 cupin compare
BPHYT_RS34765 +0.5 1.0 chemotaxis protein compare
BPHYT_RS17640 +0.5 1.9 2-alkenal reductase compare
BPHYT_RS28610 +0.5 2.7 beta-lactamase compare
BPHYT_RS31375 +0.5 2.2 AraC family transcriptional regulator compare
BPHYT_RS14005 +0.5 1.9 ABC transporter compare
BPHYT_RS26315 +0.5 1.5 sigma factor sigB regulation protein rsbQ compare
BPHYT_RS21790 +0.5 0.8 hypothetical protein compare
BPHYT_RS20545 +0.5 1.0 hypothetical protein compare
BPHYT_RS09900 +0.5 2.3 aldehyde dehydrogenase compare
BPHYT_RS06135 +0.5 2.6 hypothetical protein compare
BPHYT_RS00115 +0.5 1.2 acetaldehyde dehydrogenase compare
BPHYT_RS35180 +0.5 1.5 high potential iron-sulfur protein compare
BPHYT_RS09205 +0.5 1.9 cytochrome P450 compare
BPHYT_RS18600 +0.5 1.2 glutathione S-transferase compare
BPHYT_RS16195 +0.5 2.4 carbon monoxide dehydrogenase subunit G compare
BPHYT_RS29865 +0.5 1.1 sugar transferase compare
BPHYT_RS19025 +0.5 3.1 transcriptional regulator compare
BPHYT_RS21850 +0.5 2.0 pyrimidine reductase compare
BPHYT_RS34505 +0.5 1.2 hypothetical protein compare
BPHYT_RS33990 +0.5 0.8 ATPase compare
BPHYT_RS18865 +0.5 1.2 flagellar L-ring protein FlgH compare
BPHYT_RS10810 +0.5 2.2 glucose-methanol-choline oxidoreductase compare
BPHYT_RS11975 +0.5 1.5 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS12900 +0.5 0.8 transposase compare
BPHYT_RS32930 +0.5 1.0 NADPH:quinone reductase and related Zn-dependent oxidoreductase-like protein compare
BPHYT_RS27660 +0.5 1.4 hypothetical protein compare
BPHYT_RS20430 +0.5 1.2 3-dehydroquinate dehydratase compare
BPHYT_RS24245 +0.5 2.1 MerR family transcriptional regulator compare
BPHYT_RS30745 +0.5 1.6 hypothetical protein compare
BPHYT_RS05900 +0.5 1.1 hypothetical protein compare
BPHYT_RS29975 +0.5 1.4 multidrug ABC transporter ATP-binding protein compare
BPHYT_RS25330 +0.5 1.5 hypothetical protein compare
BPHYT_RS29105 +0.5 1.1 class V aminotransferase compare
BPHYT_RS08665 +0.5 0.6 hypothetical protein compare
BPHYT_RS06025 +0.5 1.8 hypothetical protein compare
BPHYT_RS25505 +0.5 1.7 RNA polymerase sigma factor compare
BPHYT_RS28905 +0.5 1.0 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS10845 +0.5 1.4 UbiD family decarboxylase compare
BPHYT_RS04890 +0.5 0.9 cobalamin biosynthesis protein CobD compare
BPHYT_RS01435 +0.5 4.5 LysR family transcriptional regulator compare
BPHYT_RS17830 +0.5 0.6 histidine kinase compare
BPHYT_RS00960 +0.5 1.0 recombinase RecA compare
BPHYT_RS07600 +0.5 1.5 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS34240 +0.5 0.9 ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data) compare
BPHYT_RS23350 +0.5 1.2 NAD-dependent epimerase/dehydratase compare
BPHYT_RS03660 +0.5 1.3 mechanosensitive ion channel protein MscS compare
BPHYT_RS30840 +0.5 1.5 small mechanosensitive ion channel protein MscS compare
BPHYT_RS27425 +0.5 2.1 C4-dicarboxylate ABC transporter compare
BPHYT_RS30365 +0.5 0.5 beta-lactamase compare
BPHYT_RS20715 +0.5 1.0 peptidase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in nutrient experiments

For nutrient L-Histidine across organisms