Experiment set4IT034 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
AO356_19045 +1.3 10.2 chemotaxis protein CheY compare
AO356_00130 +1.0 3.7 XRE family transcriptional regulator compare
AO356_21765 +1.0 1.6 GntR family transcriptional regulator compare
AO356_05035 +0.9 3.6 GNAT family acetyltransferase compare
AO356_28440 +0.9 2.0 galactose 1-dehydrogenase compare
AO356_01515 +0.9 4.8 N-formylglutamate amidohydrolase compare
AO356_00125 +0.9 2.8 hypothetical protein compare
AO356_12610 +0.9 2.4 Fe-S oxidoreductase compare
AO356_01985 +0.9 1.4 head completion/stabilization protein compare
AO356_25150 +0.8 2.1 molybdenum cofactor biosynthesis protein B compare
AO356_09850 +0.8 1.9 hypothetical protein compare
AO356_18780 +0.8 0.9 carbon storage regulator compare
AO356_22520 +0.8 1.6 glyoxalase compare
AO356_02905 +0.8 5.1 amino acid ABC transporter substrate-binding protein compare
AO356_22675 +0.8 1.5 sulfate transporter compare
AO356_07600 +0.7 2.3 hypothetical protein compare
AO356_29990 +0.7 1.3 cupin compare
AO356_01875 +0.7 1.4 Cro/Cl family transcriptional regulator compare
AO356_27050 +0.7 2.6 hypothetical protein compare
AO356_16520 +0.7 1.1 Fe-S-oxidoreductase compare
AO356_22950 +0.6 1.2 peptidylprolyl isomerase compare
AO356_08380 +0.6 2.1 acetyltransferase compare
AO356_27995 +0.6 1.6 thioredoxin reductase compare
AO356_19780 +0.6 4.7 histidine kinase compare
AO356_29420 +0.6 2.1 1-aminocyclopropane-1-carboxylate deaminase compare
AO356_15980 +0.6 2.1 hypothetical protein compare
AO356_25830 +0.6 0.9 DNA repair protein compare
AO356_00355 +0.6 2.8 chemotaxis protein CheY compare
AO356_29120 +0.6 2.5 vanillate monooxygenase compare
AO356_05615 +0.6 1.3 hypothetical protein compare
AO356_19515 +0.6 1.3 hypothetical protein compare
AO356_24880 +0.6 1.8 ABC transporter substrate-binding protein compare
AO356_05830 +0.6 1.1 phage tail protein compare
AO356_25245 +0.6 2.0 anaerobic ribonucleoside-triphosphate reductase activating protein compare
AO356_15460 +0.6 1.3 hypothetical protein compare
AO356_27405 +0.6 1.7 MarR family transcriptional regulator compare
AO356_20260 +0.5 2.1 termination factor Rho compare
AO356_08035 +0.5 2.4 ArsR family transcriptional regulator compare
AO356_30415 +0.5 1.6 pyrroloquinoline quinone biosynthesis protein PqqC compare
AO356_03210 +0.5 1.6 hypothetical protein compare
AO356_20585 +0.5 2.6 hypothetical protein compare
AO356_26005 +0.5 2.1 hypothetical protein compare
AO356_22995 +0.5 1.6 ArsR family transcriptional regulator compare
AO356_25505 +0.5 1.0 hypothetical protein compare
AO356_26350 +0.5 1.1 acetyl-CoA acetyltransferase compare
AO356_02445 +0.5 2.0 prevent-host-death protein compare
AO356_20570 +0.5 1.7 baseplate assembly protein compare
AO356_11415 +0.5 3.4 chemotaxis protein CheY compare
AO356_19955 +0.5 2.2 Flp pilus assembly protein CpaB compare
AO356_22960 +0.5 2.4 AraC family transcriptional regulator compare
AO356_21790 +0.5 1.4 sulfonate ABC transporter ATP-binding protein compare
AO356_07080 +0.5 1.7 FagA protein compare
AO356_18410 +0.5 1.6 phosphoesterase compare
AO356_28825 +0.5 1.0 histidine kinase compare
AO356_22370 +0.5 1.8 hypothetical protein compare
AO356_25835 +0.5 1.3 hypothetical protein compare
AO356_27285 +0.5 1.3 hypothetical protein compare
AO356_26085 +0.5 2.1 GntR family transcriptional regulator compare
AO356_08465 +0.5 1.0 protein hupE compare
AO356_18160 +0.5 1.5 glycine cleavage system protein T compare
AO356_23400 +0.5 1.5 phosphonate ABC transporter compare
AO356_23475 +0.5 2.4 polyketide synthase compare
AO356_26485 +0.5 1.1 hypothetical protein compare
AO356_04405 +0.5 1.6 NADH dehydrogenase compare
AO356_02560 +0.5 2.4 Xanthine dehydrogenase (EC 1.17.1.4) (from data) compare
AO356_01430 +0.5 2.0 NADP oxidoreductase compare
AO356_22330 +0.5 1.8 hypothetical protein compare
AO356_14060 +0.5 0.9 hypothetical protein compare
AO356_02310 +0.5 1.8 PasA protein compare
AO356_22435 +0.5 2.0 decarboxylase compare
AO356_01015 +0.5 1.2 peptidylprolyl isomerase compare
AO356_00440 +0.4 1.6 peptidylprolyl isomerase compare
AO356_22650 +0.4 1.0 chemotaxis protein CheD compare
AO356_23595 +0.4 1.0 short-chain dehydrogenase compare
AO356_06580 +0.4 1.1 GTP-binding protein compare
AO356_18810 +0.4 1.8 DNA-binding protein compare
AO356_21115 +0.4 2.1 alpha/beta hydrolase compare
AO356_15440 +0.4 4.0 histidine kinase compare
AO356_25710 +0.4 2.1 flavin reductase compare
AO356_29260 +0.4 1.3 nitrate ABC transporter substrate-binding protein compare
AO356_05540 +0.4 0.9 cold-shock protein compare
AO356_20930 +0.4 1.0 MerR family transcriptional regulator compare
AO356_21835 +0.4 1.3 glyoxalase compare
AO356_25545 +0.4 1.6 acyl-CoA dehydrogenase compare
AO356_23320 +0.4 1.9 1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase compare
AO356_21375 +0.4 2.6 4-hydroxybenzoyl-CoA thioesterase compare
AO356_29770 +0.4 1.5 sarcosine oxidase subunit alpha compare
AO356_29320 +0.4 1.4 dihydrofolate reductase compare
AO356_30275 +0.4 0.5 hypothetical protein compare
AO356_29970 +0.4 2.3 ring-cleaving dioxygenase compare
AO356_16590 +0.4 1.4 aminopeptidase compare
AO356_09025 +0.4 1.5 ZapA compare
AO356_25580 +0.4 1.5 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
AO356_00675 +0.4 1.4 glyoxalase compare
AO356_20880 +0.4 1.2 3-methylitaconate isomerase compare
AO356_26095 +0.4 0.9 Rieske (2Fe-2S) protein compare
AO356_27790 +0.4 1.2 N-acetylglucosamine-6-sulfatase compare
AO356_21260 +0.4 0.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO356_12895 +0.4 3.7 polyphosphate kinase compare
AO356_09760 +0.4 1.5 glutaredoxin compare
AO356_27915 +0.4 0.8 salicylaldehyde dehydrogenase compare
AO356_29180 +0.4 2.0 hydrolase compare
AO356_22000 +0.4 2.2 plasmid stabilization protein compare
AO356_26920 +0.4 1.6 alpha/beta hydrolase compare
AO356_02745 +0.4 1.8 transcriptional regulator compare
AO356_29910 +0.4 2.3 hypothetical protein compare
AO356_02895 +0.4 2.5 RNA polymerase subunit sigma-70 compare
AO356_24125 +0.4 1.9 hypothetical protein compare
AO356_12325 +0.4 2.8 serine/threonine protein phosphatase compare
AO356_10350 +0.4 3.1 phosphoenolpyruvate-protein phosphotransferase compare
AO356_12140 +0.4 1.1 type VI secretion protein compare
AO356_18585 +0.4 2.4 LysR family transcriptional regulator compare
AO356_19555 +0.4 1.0 hypothetical protein compare
AO356_15860 +0.4 0.5 general secretion pathway protein GspH compare
AO356_04225 +0.4 1.7 FMN-dependent NADH-azoreductase compare
AO356_18775 +0.4 1.3 aspartate kinase compare
AO356_21380 +0.4 1.6 tRNA-dihydrouridine synthase C compare
AO356_05345 +0.4 1.5 hypothetical protein compare
AO356_20975 +0.4 1.7 hypothetical protein compare
AO356_02285 +0.4 2.0 beta-hexosaminidase compare
AO356_30270 +0.4 1.2 LysR family transcriptional regulator compare
AO356_02635 +0.4 1.1 pathogenicity island 1 effector protein compare
AO356_06825 +0.4 1.8 lactoylglutathione lyase compare
AO356_26090 +0.4 1.4 Vanillate O-demethylase oxidoreductase compare
AO356_00825 +0.4 1.6 hypothetical protein compare
AO356_27040 +0.4 1.2 LysR family transcriptional regulator compare
AO356_26800 +0.4 1.4 aldehyde dehydrogenase compare
AO356_15485 +0.4 2.2 ATP-dependent helicase compare
AO356_10170 +0.4 1.1 chemotaxis protein CheY compare
AO356_18590 +0.4 1.4 hypothetical protein compare
AO356_28710 +0.4 0.4 aldehyde dehydrogenase compare
AO356_15770 +0.3 1.8 hypothetical protein compare
AO356_17435 +0.3 2.2 glutaredoxin compare
AO356_15700 +0.3 1.7 GTP-binding protein compare
AO356_14200 +0.3 1.1 pyrroloquinoline quinone biosynthesis protein PqqE compare
AO356_02215 +0.3 1.3 transcriptional regulator compare
AO356_26110 +0.3 1.3 sarcosine oxidase subunit alpha compare
AO356_27360 +0.3 1.1 nitrile hydratase subunit alpha compare
AO356_22270 +0.3 1.8 hypothetical protein compare
AO356_21475 +0.3 1.2 oxidoreductase compare
AO356_15520 +0.3 0.9 AsnC family transcriptional regulator compare
AO356_06225 +0.3 1.8 hypothetical protein compare
AO356_12235 +0.3 1.3 hypothetical protein compare
AO356_19020 +0.3 1.5 arsenate reductase compare
AO356_24405 +0.3 1.2 tRNA hydroxylase compare
AO356_27635 +0.3 1.7 histidine kinase compare
AO356_13515 +0.3 1.3 triphosphoribosyl-dephospho-CoA synthase MdcB compare
AO356_23105 +0.3 1.5 Beta-ureidopropionase (EC 3.5.1.6) (from data) compare
AO356_12295 +0.3 1.9 type VI secretion protein compare
AO356_06115 +0.3 1.1 hypothetical protein compare
AO356_09130 +0.3 2.1 cobalamin biosynthesis protein CobQ compare
AO356_09185 +0.3 0.7 hypothetical protein compare
AO356_26730 +0.3 0.7 cupin compare
AO356_28995 +0.3 0.8 ABC transporter ATP-binding protein compare
AO356_29840 +0.3 1.9 chemotaxis protein CheY compare
AO356_04460 +0.3 0.8 sugar translocase compare
AO356_10015 +0.3 2.8 protein BsmA compare
AO356_09730 +0.3 1.9 nitrogen regulation protein NR(I) compare
AO356_28835 +0.3 1.4 ABC transporter substrate-binding protein compare
AO356_23435 +0.3 1.5 hypothetical protein compare
AO356_12905 +0.3 0.8 amino acid ABC transporter ATP-binding protein compare
AO356_00750 +0.3 1.9 oxidoreductase compare
AO356_23905 +0.3 1.6 GNAT family acetyltransferase compare
AO356_04345 +0.3 1.3 hypothetical protein compare
AO356_18850 +0.3 1.4 hypothetical protein compare
AO356_29930 +0.3 1.7 hypothetical protein compare
AO356_03760 +0.3 1.2 flagellar biosynthetic protein FliR compare
AO356_29625 +0.3 1.4 hypothetical protein compare
AO356_30000 +0.3 0.7 hypothetical protein compare
AO356_18555 +0.3 1.0 peptidase M4 compare
AO356_29665 +0.3 1.6 LysR family transcriptional regulator compare
AO356_07895 +0.3 1.9 hypothetical protein compare
AO356_01500 +0.3 1.4 RpiR family transcriptional regulator compare
AO356_13255 +0.3 1.7 multidrug transporter CflA compare
AO356_13940 +0.3 2.4 metallophosphoesterase compare
AO356_17610 +0.3 1.5 preQ0 transporter compare
AO356_28980 +0.3 1.4 amidohydrolase compare
AO356_24325 +0.3 0.9 type VI secretion protein compare
AO356_08440 +0.3 1.4 hypothetical protein compare
AO356_14005 +0.3 2.0 cold-shock protein compare
AO356_08315 +0.3 0.7 hypothetical protein compare
AO356_22310 +0.3 1.2 hypothetical protein compare
AO356_03855 +0.3 2.5 AAA family ATPase compare
AO356_27485 +0.3 1.1 hypothetical protein compare
AO356_21995 +0.3 1.6 hemerythrin compare
AO356_01880 +0.3 1.6 hypothetical protein compare
AO356_23045 +0.3 1.6 hypothetical protein compare
AO356_04395 +0.3 1.6 hypothetical protein compare
AO356_10985 +0.3 1.5 chorismate--pyruvate lyase compare
AO356_06265 +0.3 1.9 chemotaxis protein CheR compare
AO356_01370 +0.3 1.2 delta-aminolevulinic acid dehydratase compare
AO356_07655 +0.3 1.8 hypothetical protein compare
AO356_14800 +0.3 2.3 hypothetical protein compare
AO356_22405 +0.3 0.8 hypothetical protein compare
AO356_21945 +0.3 1.8 AraC family transcriptional regulator compare
AO356_01045 +0.3 1.3 hypothetical protein compare
AO356_28365 +0.3 1.6 Fis family transcriptional regulator compare
AO356_25155 +0.3 1.4 molybdenum cofactor biosynthesis protein MoaA compare
AO356_21460 +0.3 0.7 colicin V production CvpA compare
AO356_00070 +0.3 1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2C3 in lb experiments