Experiment set4IT033 for Methanococcus maripaludis S2

Compare to:

H2 deepwell acetate and casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS03315 -3.1 -2.1 ferrous iron transport protein A compare
MMP_RS07845 -3.0 -4.6 LL-diaminopimelate aminotransferase compare
MMP_RS08720 -2.5 -2.2 4Fe-4S binding protein compare
MMP_RS07005 -2.4 -1.0 4Fe-4S binding protein compare
MMP_RS03435 -2.3 -2.3 ketol-acid reductoisomerase compare
MMP_RS04605 -2.2 -7.2 cobalt ECF transporter T component CbiQ compare
MMP_RS01005 -2.2 -2.1 riboflavin synthase compare
MMP_RS01700 -2.1 -1.5 dihydroxy-acid dehydratase compare
MMP_RS06285 -2.0 -3.2 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS01020 -2.0 -1.3 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01225 -1.9 -6.0 DUF5379 domain-containing protein compare
MMP_RS03015 -1.9 -10.8 GTP 3' 8-cyclase MoaA compare
MMP_RS03475 -1.8 -0.8 hypothetical protein compare
MMP_RS04620 -1.8 -10.5 cobalt transporter CbiM compare
MMP_RS05500 -1.7 -9.1 2-isopropylmalate synthase compare
MMP_RS03035 -1.7 -5.3 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS00300 -1.7 -0.8 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06355 -1.7 -3.0 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS02135 -1.6 -5.2 DUF5612 domain-containing protein compare
MMP_RS05515 -1.6 -7.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS05550 -1.6 -0.8 cation:proton antiporter compare
MMP_RS02900 -1.6 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS06270 -1.6 -5.7 TIGR00300 family protein compare
MMP_RS06230 -1.5 -3.7 helix-turn-helix domain-containing protein compare
MMP_RS07635 -1.5 -6.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS02010 -1.5 -9.1 PHP domain-containing protein compare
MMP_RS03600 -1.5 -2.1 triose-phosphate isomerase compare
MMP_RS00750 -1.5 -2.5 fumarate hydratase compare
MMP_RS08745 -1.5 -5.8 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01175 -1.5 -3.8 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS05555 -1.5 -1.2 DUF4040 domain-containing protein compare
MMP_RS01265 -1.5 -3.5 hypothetical protein compare
MMP_RS06730 -1.4 -2.1 phosphopantothenate/pantothenate synthetase compare
MMP_RS01455 -1.4 -5.7 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS08715 -1.4 -2.4 formylmethanofuran dehydrogenase subunit B compare
MMP_RS06350 -1.4 -5.6 HesA/MoeB/ThiF family protein compare
MMP_RS06630 -1.4 -1.2 UPF0058 family protein compare
MMP_RS04500 -1.4 -9.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS07345 -1.4 -5.6 glycine synthesis protein GlyXL (from data) compare
MMP_RS02355 -1.3 -3.2 30S ribosomal protein S27ae compare
MMP_RS00895 -1.3 -2.8 hypothetical protein compare
MMP_RS05070 -1.3 -6.9 4Fe-4S dicluster domain-containing protein compare
MMP_RS08105 -1.3 -6.8 6-carboxyhexanoate--CoA ligase compare
MMP_RS00695 -1.3 -1.0 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01220 -1.3 -6.7 hypothetical protein compare
MMP_RS03640 -1.3 -3.2 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05425 -1.3 -4.2 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS08725 -1.3 -1.9 Ni/Fe hydrogenase subunit alpha compare
MMP_RS08320 -1.3 -5.0 molybdopterin molybdotransferase MoeA compare
MMP_RS01720 -1.3 -2.4 replication factor C large subunit compare
MMP_RS05060 -1.3 -8.5 AAA family ATPase compare
MMP_RS04615 -1.3 -4.5 PDGLE domain-containing protein compare
MMP_RS08165 -1.2 -2.3 phosphoglycerate dehydrogenase compare
MMP_RS02885 -1.2 -9.5 molybdopterin biosynthesis protein compare
MMP_RS08635 -1.2 -1.5 UbiA family prenyltransferase compare
MMP_RS00515 -1.2 -0.8 DUF655 domain-containing protein compare
MMP_RS06105 -1.2 -6.6 hydrogenase maturation peptidase HycI compare
MMP_RS06625 -1.2 -1.6 DNA primase compare
MMP_RS07575 -1.2 -3.7 RNA ligase partner protein compare
MMP_RS07955 -1.2 -4.6 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS05080 -1.2 -9.6 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS05085 -1.2 -5.8 AAA family ATPase compare
MMP_RS06865 -1.2 -2.2 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS00305 -1.2 -1.6 phosphoribosyl-ATP diphosphatase compare
MMP_RS05100 -1.2 -10.3 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS00735 -1.2 -3.7 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS06295 -1.2 -5.4 methanogenesis marker 14 protein compare
MMP_RS03390 -1.2 -5.3 malate dehydrogenase compare
MMP_RS06340 -1.1 -6.0 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS06375 -1.1 -4.8 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS04790 -1.1 -7.0 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS03250 -1.1 -3.5 MJ1244 family protein compare
MMP_RS05065 -1.1 -4.9 CooT family nickel-binding protein compare
MMP_RS05090 -1.1 -7.8 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS04685 -1.1 -2.5 DUF126 domain-containing protein compare
MMP_RS02235 -1.1 -7.0 CBS domain-containing protein compare
MMP_RS06700 -1.1 -7.5 hypothetical protein compare
MMP_RS01830 -1.1 -1.3 tRNA-Val compare
MMP_RS08210 -1.1 -1.9 phosphatidylglycerophosphatase A compare
MMP_RS05075 -1.1 -9.8 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS03450 -1.1 -2.0 glycine synthesis protein GlyXS (from data) compare
MMP_RS04890 -1.1 -0.8 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS02875 -1.1 -6.0 chorismate pyruvate-lyase family protein compare
MMP_RS04215 -1.1 -5.6 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS01795 -1.1 -1.3 methanogenesis marker 6 protein compare
MMP_RS06895 -1.1 -1.5 selenocysteine-specific translation elongation factor compare
MMP_RS02240 -1.1 -3.1 methanogenesis marker 7 protein compare
MMP_RS07730 -1.1 -1.5 pyruvate synthase subunit beta compare
MMP_RS05095 -1.1 -6.6 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS01755 -1.0 -1.1 DUF2097 domain-containing protein compare
MMP_RS08100 -1.0 -6.4 8-amino-7-oxononanoate synthase compare
MMP_RS08460 -1.0 -2.1 proteasome-activating nucleotidase compare
MMP_RS07600 -1.0 -2.2 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS02195 -1.0 -3.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08330 -1.0 -3.5 NADH-quinone oxidoreductase subunit H compare
MMP_RS03400 -1.0 -1.8 archease compare
MMP_RS07645 -1.0 -5.2 aldehyde dehydrogenase family protein compare
MMP_RS08095 -1.0 -4.2 dethiobiotin synthase compare
MMP_RS01380 -1.0 -3.1 PHP domain-containing protein compare
MMP_RS03140 -1.0 -6.4 hypothetical protein compare
MMP_RS08820 -1.0 -2.8 hypothetical protein compare
MMP_RS06400 -1.0 -1.4 4Fe-4S binding protein compare
MMP_RS01385 -1.0 -0.6 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS05540 -1.0 -4.0 hypothetical protein compare
MMP_RS08785 -1.0 -1.0 RNA-protein complex protein Nop10 compare
MMP_RS00685 -0.9 -2.4 2-phospho-L-lactate guanylyltransferase compare
MMP_RS08790 -0.9 -1.8 translation initiation factor IF-2 subunit alpha compare
MMP_RS03445 -0.9 -0.8 methanogenesis marker 17 protein compare
MMP_RS00810 -0.9 -5.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS03145 -0.9 -4.6 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS06345 -0.9 -3.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS05925 -0.9 -2.1 small nuclear ribonucleoprotein compare
MMP_RS03585 -0.9 -3.0 Hsp20/alpha crystallin family protein compare
MMP_RS07710 -0.9 -5.1 cell division protein FtsZ compare
MMP_RS08995 -0.9 -1.3 hypothetical protein compare
MMP_RS03700 -0.9 -5.1 sodium:proton antiporter compare
MMP_RS04850 -0.9 -7.4 UPF0254 family protein compare
MMP_RS07185 -0.9 -6.5 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS04775 -0.9 -2.6 adenosylhomocysteinase compare
MMP_RS07525 -0.9 -4.8 4Fe-4S binding protein compare
MMP_RS07445 -0.9 -3.6 helix-turn-helix domain-containing protein compare
MMP_RS00110 -0.9 -2.1 hypothetical protein compare
MMP_RS03420 -0.9 -2.9 acetolactate synthase small subunit compare
MMP_RS08760 -0.9 -2.9 hypothetical protein compare
MMP_RS00720 -0.9 -4.1 metal-dependent hydrolase compare
MMP_RS02110 -0.9 -2.0 hypothetical protein compare
MMP_RS09020 -0.8 -1.3 hypothetical protein compare
MMP_RS06370 -0.8 -3.4 biotin synthase BioB compare
MMP_RS05055 -0.8 -6.4 DUF166 domain-containing protein compare
MMP_RS03465 -0.8 -1.1 adenine phosphoribosyltransferase compare
MMP_RS06705 -0.8 -4.9 formate/nitrite transporter family protein compare
MMP_RS06885 -0.8 -1.7 50S ribosome-binding GTPase compare
MMP_RS04055 -0.8 -1.4 hypothetical protein compare
MMP_RS03095 -0.8 -3.6 diphthine synthase compare
MMP_RS00730 -0.8 -3.3 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS03155 -0.8 -4.8 precorrin-6A reductase compare
MMP_RS05535 -0.8 -3.5 hypothetical protein compare
MMP_RS06685 -0.8 -4.7 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS01545 -0.8 -0.8 CBS domain-containing protein compare
MMP_RS06925 -0.8 -1.4 ribonuclease VapC4 compare
MMP_RS05430 -0.8 -2.5 TIGR00288 family NYN domain-containing protein compare
MMP_RS07750 -0.8 -2.4 DUF357 domain-containing protein compare
MMP_RS06680 -0.8 -4.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS02800 -0.8 -2.9 nucleotidyltransferase domain-containing protein compare
MMP_RS05265 -0.8 -1.9 2-isopropylmalate synthase compare
MMP_RS00130 -0.8 -0.9 nickel-responsive transcriptional regulator NikR compare
MMP_RS05950 -0.8 -4.5 nickel-dependent hydrogenase large subunit compare
MMP_RS00770 -0.8 -3.3 hypothetical protein compare
MMP_RS00985 -0.8 -2.6 CDC48 family AAA ATPase compare
MMP_RS07700 -0.7 -5.0 DUF1188 domain-containing protein compare
MMP_RS06020 -0.7 -2.1 archaeoflavoprotein AfpA compare
MMP_RS08240 -0.7 -4.7 methanogenesis marker 16 metalloprotein compare
MMP_RS07540 -0.7 -2.1 CBS domain-containing protein compare
MMP_RS00315 -0.7 -4.2 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS00295 -0.7 -1.6 gamma carbonic anhydrase family protein compare
MMP_RS01500 -0.7 -1.7 CBS domain-containing protein compare
MMP_RS04785 -0.7 -5.5 hypothetical protein compare
MMP_RS05930 -0.7 -1.2 3-isopropylmalate dehydratase large subunit compare
MMP_RS07195 -0.7 -4.0 M20 family metallo-hydrolase compare
MMP_RS01325 -0.7 -1.6 dihydroneopterin aldolase family protein compare
MMP_RS07695 -0.7 -3.1 DUF3236 domain-containing protein compare
MMP_RS00725 -0.7 -2.8 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS01865 -0.7 -1.1 GPR1/FUN34/YaaH family transporter compare
MMP_RS01610 -0.7 -1.8 hypothetical protein compare
MMP_RS01800 -0.7 -2.1 TIGR00303 family protein compare
MMP_RS06120 -0.7 -1.3 UPF0147 family protein compare
MMP_RS06770 -0.7 -3.8 DHH family phosphoesterase compare
MMP_RS07705 -0.7 -4.4 transcriptional regulator compare
MMP_RS00120 -0.7 -2.4 LysR family transcriptional regulator compare
MMP_RS04585 -0.7 -4.2 AIR synthase related protein compare
MMP_RS03025 -0.7 -2.7 molybdenum cofactor guanylyltransferase compare
MMP_RS05295 -0.6 -4.7 minichromosome maintenance protein MCM compare
MMP_RS08830 -0.6 -3.5 GTP-binding protein compare
MMP_RS03080 -0.6 -2.0 universal stress protein compare
MMP_RS08280 -0.6 -1.3 proteasome assembly chaperone family protein compare
MMP_RS08355 -0.6 -3.3 Na(+)/H(+) antiporter subunit B compare
MMP_RS03580 -0.6 -1.8 signal recognition particle-docking protein FtsY compare
MMP_RS02280 -0.6 -0.5 DUF211 domain-containing protein compare
MMP_RS03225 -0.6 -2.6 acetolactate decarboxylase compare
MMP_RS05920 -0.6 -0.4 50S ribosomal protein L37e compare
MMP_RS04420 -0.6 -2.1 LysE family translocator compare
MMP_RS05315 -0.6 -1.4 hypothetical protein compare
MMP_RS08335 -0.6 -2.5 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS02345 -0.6 -1.7 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS02130 -0.6 -2.5 zinc metalloprotease HtpX compare
MMP_RS05765 -0.6 -2.4 M42 family metallopeptidase compare
MMP_RS01420 -0.6 -1.2 hypothetical protein compare
MMP_RS00850 -0.6 -2.7 TIGR01177 family methyltransferase compare
MMP_RS08645 -0.6 -2.8 UPF0179 family protein compare
MMP_RS08360 -0.6 -2.9 hypothetical protein compare
MMP_RS00620 -0.6 -3.5 4Fe-4S binding protein compare
MMP_RS06725 -0.6 -3.7 hypothetical protein compare
MMP_RS07380 -0.6 -0.9 transcription elongation factor Spt5 compare
MMP_RS08915 -0.6 -1.7 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMP_RS01110 -0.6 -1.8 FmdE family protein compare
MMP_RS07630 -0.5 -0.6 ATP-binding cassette domain-containing protein compare
MMP_RS02935 -0.5 -2.5 A24 family peptidase compare
MMP_RS06475 -0.5 -1.7 FAD-dependent oxidoreductase compare
MMP_RS08345 -0.5 -4.1 4Fe-4S binding protein compare
MMP_RS01675 -0.5 -1.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Mc_vitamins across organisms