Experiment set4IT033 for Dinoroseobacter shibae DFL-12

Compare to:

marine broth with Sodium Chlorite 0.5 mM

Group: stress
Media: marine_broth_2216 + Sodium Chlorite (0.5 mM)
Culturing: Dino_ML3, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Adam on 2/27/2014
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Growth plate: 826 D7,D8

Specific Phenotypes

For 11 genes in this experiment

For stress Sodium Chlorite in Dinoroseobacter shibae DFL-12

For stress Sodium Chlorite across organisms

SEED Subsystems

Subsystem #Specific
Terminal cytochrome d ubiquinol oxidases 2
Terminal cytochrome oxidases 2
Bacterial RNA-metabolizing Zn-dependent hydrolases 1
Chlorophyll Biosynthesis 1
Conserved gene cluster associated with Met-tRNA formyltransferase 1
Photosystem II-type photosynthetic reaction center 1
Transcription initiation, bacterial sigma factors 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
10,13-epoxy-11-methyl-octadecadienoate biosynthesis 2 2 2
cis-cyclopropane fatty acid (CFA) biosynthesis 1 1 1
sterculate biosynthesis 2 1 1
3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent) 9 8 1
3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) 9 8 1
3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic) 9 8 1
superpathway of bacteriochlorophyll a biosynthesis 26 20 1
mycolate biosynthesis 205 21 3
superpathway of mycolate biosynthesis 239 22 3