Experiment set4IT033 for Caulobacter crescentus NA1000

Compare to:

PYE with Vancomycin Hydrochloride Hydrate 0.007 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CCNA_03108 +8.0 43.7 TonB-dependent outer membrane receptor compare
CCNA_03281 +7.1 57.8 AsnC-family transcriptional regulator compare
CCNA_00324 +6.4 7.5 ExbD-family protein compare
CCNA_00224 +6.4 43.6 TonB-dependent receptor protein compare
CCNA_02243 +5.8 29.6 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_01751 +5.7 19.1 aminodeoxychorismate lyase compare
CCNA_00043 +5.7 12.8 N utilization substance protein A NusA compare
CCNA_03052 +5.6 17.2 acyltransferase compare
CCNA_02419 +5.6 15.8 TonB1 protein compare
CCNA_02842 +4.8 20.3 two-component sensor histidine kinase compare
CCNA_02845 +4.4 16.0 two-component response regulator compare
CCNA_02242 +4.0 10.0 PHB granule-associated protein, phasin2 compare
CCNA_03256 +3.9 4.6 chorismate synthase compare
CCNA_03824 +3.8 26.2 2-polyprenylphenol 6-hydroxylase accessory protein UbiB compare
CCNA_01534 +3.7 15.4 hypothetical protein compare
CCNA_02028 +3.6 7.0 NTF2 superfamily protein compare
CCNA_02287 +3.6 18.8 TetR-family transcriptional regulator compare
CCNA_00398 +3.5 24.9 hypothetical protein compare
CCNA_01248 +3.5 13.9 TetR-family transcriptional regulator compare
CCNA_02957 +3.4 8.5 ArsR-family transcriptional regulator compare
CCNA_03557 +3.3 11.6 hypothetical protein compare
CCNA_01324 +3.2 10.7 LSU ribosomal protein L30P compare
CCNA_00389 +3.0 5.7 aminomethyltransferase family protein compare
CCNA_01954 +2.9 4.7 ribonuclease E compare
CCNA_03401 +2.7 7.8 conserved hypothetical cytosolic protein compare
CCNA_01199 +2.7 16.6 glucose-1-phosphate thymidylyltransferase compare
CCNA_01361 +2.6 8.9 PepSY superfamily protein compare
CCNA_00044 +2.6 7.3 ribosome maturation protein RimP compare
CCNA_02030 +2.5 5.6 hypothetical protein compare
CCNA_00497 +2.5 16.8 putative rhamnosyl transferase compare
CCNA_01676 +2.4 1.6 hypothetical protein compare
CCNA_01193 +2.4 18.8 amylosucrase compare
CCNA_03072 +2.4 10.4 TetR-family transcriptional regulator compare
CCNA_00255 +2.3 6.0 esterase compare
CCNA_00846 +2.3 21.1 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_02328 +2.3 3.1 cell cycle regulatory protein GcrA compare
CCNA_00027 +2.3 5.3 2OG-Fe(II) oxygenase compare
CCNA_02103 +2.3 5.7 hypothetical protein compare
CCNA_02026 +2.3 6.6 hypothetical protein compare
CCNA_00493 +2.2 14.6 putative polyketide cyclase-dehydrase/lipid transport protein compare
CCNA_00517 +2.2 2.5 peptidyl-tRNA hydrolase compare
CCNA_00543 +2.2 7.5 methyl-accepting chemotaxis protein compare
CCNA_01553 +2.2 12.5 undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase compare
CCNA_02077 +2.2 5.4 5'(3')-nucleotidase/polyphosphatase SurE compare
CCNA_03729 +2.2 5.3 transaldolase-like protein compare
CCNA_01086 +2.2 15.2 GTP-binding protein lepA compare
CCNA_03352 +2.1 11.4 YebC/PmpR transcriptional regulator compare
CCNA_01757 +2.1 1.4 dimethyladenosine transferase compare
CCNA_00299 +2.1 12.0 phosphoribosylamine--glycine ligase compare
CCNA_02021 +2.1 7.7 hypothetical protein compare
CCNA_02075 +2.1 2.6 peptidoglycan binding endopeptidase DipM compare
CCNA_00322 +2.1 14.9 hypothetical protein compare
CCNA_00292 +2.0 2.2 phosphate transport system permease protein pstC compare
CCNA_03030 +2.0 13.6 cytochrome c2 compare
CCNA_03453 +2.0 11.8 AcrR-family transcriptional regulator compare
CCNA_02575 +2.0 10.1 hypothetical protein compare
CCNA_02732 +2.0 4.9 hypothetical protein compare
CCNA_01712 +2.0 13.6 CopY/TcrY family transcriptional repressor compare
CCNA_02133 +2.0 9.8 glucokinase compare
CCNA_02151 +2.0 5.0 exodeoxyribonuclease VII small subunit compare
CCNA_02025 +1.9 7.6 hypothetical protein compare
CCNA_03612 +1.9 6.5 HTH XRE-family transcriptional regulator compare
CCNA_R0048 +1.9 2.9 tRNA-Leu compare
CCNA_01433 +1.8 6.1 integration host factor alpha-subunit compare
CCNA_00756 +1.8 6.3 hypothetical protein compare
CCNA_03104 +1.8 10.7 3-dehydroquinate synthase compare
CCNA_00080 +1.8 1.2 LexA-related transcriptional repressor compare
CCNA_01739 +1.8 8.7 LSU ribosomal protein L9P compare
CCNA_02663 +1.8 6.4 DnaK suppressor protein DksA compare
CCNA_00684 +1.8 5.5 anti-sigma factor, ChrR-family compare
CCNA_03064 +1.8 7.9 PadR-family transcriptional regulator compare
CCNA_02066 +1.8 10.6 phytoene/squalene synthase family protein compare
CCNA_01295 +1.8 9.3 integral membrane protein compare
CCNA_02546 +1.8 13.4 GGDEF/response regulator protein PleD compare
CCNA_00392 +1.7 12.3 dihydroorotase compare
CCNA_03811 +1.7 11.0 LysR-family transcriptional regulator compare
CCNA_03252 +1.7 12.0 CopY/TcrY-family transcriptional regulator compare
CCNA_01252 +1.7 12.4 soluble lytic murein transglycosylase compare
CCNA_03012 +1.7 9.3 peroxiredoxin compare
CCNA_00939 +1.7 9.8 MarR-family transcriptional regulator compare
CCNA_00011 +1.7 9.4 chaperone protein DnaJ compare
CCNA_00742 +1.7 9.8 HAD superfamily sugar phosphatase compare
CCNA_02448 +1.7 10.4 hypothetical protein compare
CCNA_00976 +1.7 1.2 signal peptide peptidase A compare
CCNA_02646 +1.7 3.3 cell division protein MraZ compare
CCNA_03287 +1.7 7.1 PadR-family transcriptional regulator compare
CCNA_03325 +1.6 6.0 hypothetical protein compare
CCNA_02339 +1.6 11.9 methyltransferase compare
CCNA_03479 +1.6 9.8 MarR-family transcriptional regulator compare
CCNA_03132 +1.6 6.6 transcriptional regulator, antitoxin protein higA compare
CCNA_00438 +1.6 5.9 hypothetical protein compare
CCNA_01526 +1.6 12.4 flagellar biosynthesis regulatory protein flaF compare
CCNA_03689 +1.6 13.2 alanine dehydrogenase compare
CCNA_03400 +1.6 3.9 hypothetical protein compare
CCNA_01214 +1.6 1.1 YjgP/YjgQ family membrane permease compare
CCNA_00699 +1.6 5.4 LSU ribosomal protein L28P compare
CCNA_03871 +1.6 5.5 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
CCNA_01959 +1.6 4.0 3-dehydroquinate dehydratase compare
CCNA_03289 +1.6 10.1 HicB-family RNA-binding protein compare
CCNA_02390 +1.6 2.9 phosphoglycolate phosphatase compare
CCNA_01176 +1.6 2.7 hypothetical protein compare
CCNA_00447 +1.6 6.2 chemotaxis protein cheD compare
CCNA_01012 +1.6 2.2 N-formimino-L-glutamate deiminase compare
CCNA_02535 +1.6 1.4 DNA topoisomerase I compare
CCNA_00920 +1.6 7.5 hypothetical protein compare
CCNA_03271 +1.6 13.4 methionine gamma-lyase compare
CCNA_03129 +1.6 11.4 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_02980 +1.5 12.2 tryptophan 2,3-dioxygenase compare
CCNA_03316 +1.5 11.0 UDP-N-acetylglucosamine 4,6-dehydratase/UDP-D-quinovosamine 4-dehydrogenase compare
CCNA_03702 +1.5 2.8 SSU ribosomal protein S1P compare
CCNA_01721 +1.5 5.0 RNA polymerase ECF sigma factor compare
CCNA_03744 +1.5 9.3 dTDP-glucose 4,6-dehydratase compare
CCNA_03514 +1.5 9.0 cytochrome c oxidase assembly protein ctaG compare
CCNA_02379 +1.5 9.1 hypothetical protein compare
CCNA_02225 +1.5 8.2 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_02941 +1.5 4.1 transcription elongation factor greA compare
CCNA_03043 +1.5 8.2 type IV pilin protein pilA compare
CCNA_02073 +1.5 7.5 cupin domain transcriptional regulator compare
CCNA_02134 +1.5 10.5 phosphogluconate dehydratase compare
CCNA_03989 +1.5 11.8 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_00505 +1.5 8.5 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_01119 +1.4 3.1 hypothetical protein compare
CCNA_01224 +1.4 1.0 O-antigen membrane transport protein compare
CCNA_01923 +1.4 10.0 ATP-dependent RNA helicase compare
CCNA_01775 +1.4 6.3 phosphoribosylformylglycinamidine cyclo-ligase compare
CCNA_02447 +1.4 8.9 PspA/IM30 family regulatory protein compare
CCNA_02125 +1.4 10.4 polar development protein podJ compare
CCNA_00527 +1.4 10.1 hypothetical protein compare
CCNA_01011 +1.4 7.6 imidazolonepropionase compare
CCNA_00945 +1.4 7.4 chemotaxis protein MotD compare
CCNA_03808 +1.4 9.3 organic solvent resistance transport system Ttg2C protein compare
CCNA_01851 +1.4 10.7 quinol cytochrome oxidase polypeptide II compare
CCNA_R0037 +1.4 3.3 tRNA-Glu compare
CCNA_00757 +1.4 4.0 lysyl-tRNA synthetase compare
CCNA_00028 +1.4 3.9 TonB-dependent receptor compare
CCNA_01059 +1.4 9.0 S-layer protein rsaA compare
CCNA_03807 +1.4 7.7 organic solvent resistance transport system Ttg2D protein compare
CCNA_00441 +1.4 9.2 chemotaxis receiver domain protein cheYI compare
CCNA_02109 +1.4 3.4 thiamine biosynthesis protein thiC compare
CCNA_03910 +1.4 2.3 hypothetical protein compare
CCNA_01849 +1.4 9.6 quinol cytochrome oxidase polypeptide III compare
CCNA_03513 +1.4 8.3 cytochrome c oxidase subunit III coxC compare
CCNA_00354 +1.4 8.7 NlpC/P60 CHAP domain amidase protein compare
CCNA_00518 +1.4 7.0 LSU ribosomal protein L25P compare
CCNA_01094 +1.4 6.1 hypothetical protein compare
CCNA_00206 +1.4 5.3 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A compare
CCNA_01444 +1.4 7.6 poly(3-hydroxyalkanoate) polymerase compare
CCNA_03805 +1.4 9.8 PadR-family transcriptional regulator compare
CCNA_00264 +1.4 8.1 C4-dicarboxylate transport protein compare
CCNA_00562 +1.4 9.1 dihydroorotate dehydrogenase compare
CCNA_03650 +1.4 1.7 mannose-1-phosphate guanyltransferase compare
CCNA_00801 +1.4 1.3 cytochrome bd-type quinol oxidase, subunit 2 cydB compare
CCNA_00190 +1.3 1.2 acyl-CoA hydrolase compare
CCNA_00031 +1.3 7.9 toxin protein VapC compare
CCNA_02617 +1.3 11.3 histidinol-phosphate aminotransferase compare
CCNA_01942 +1.3 7.8 Rrf2 family protein compare
CCNA_00893 +1.3 5.6 helix-turn-helix DNA-binding protein compare
CCNA_03105 +1.3 6.6 DnaJ domain protein compare
CCNA_01443 +1.3 6.4 hypothetical protein compare
CCNA_00147 +1.3 3.1 hypothetical protein compare
CCNA_02567 +1.3 10.0 sensory transduction histidine kinase pleC compare
CCNA_00446 +1.3 7.4 chemotaxis receiver domain protein cheYII compare
CCNA_02135 +1.3 6.9 6-phosphogluconolactonase compare
CCNA_01573 +1.3 7.7 ArsR-family transcriptional regulator compare
CCNA_00352 +1.3 9.1 integral membrane protein compare
CCNA_00852 +1.3 1.7 TetR family transcriptional regulator compare
CCNA_03586 +1.3 8.7 chemotaxis protein methyltransferase compare
CCNA_03202 +1.3 8.3 lipid A 3-O-deacylase PagL compare
CCNA_03858 +1.3 7.8 protein translocase subunit secB compare
CCNA_01931 +1.3 8.3 TetR-family transcriptional regulator compare
CCNA_00442 +1.3 10.9 chemotaxis histidine kinase protein cheAI compare
CCNA_03961 +1.3 6.5 hypothetical protein compare
CCNA_00079 +1.3 5.6 MerR-family transcriptional regulator compare
CCNA_01453 +1.3 5.1 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_01729 +1.3 2.1 transporter, sodium/bile acid symporter family compare
CCNA_01583 +1.3 0.9 phosphate-binding protein compare
CCNA_02616 +1.3 9.9 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_02199 +1.3 9.6 methyltransferase compare
CCNA_03350 +1.3 3.3 hypothetical protein compare
CCNA_01840 +1.3 8.5 MerR-family transcriptional regulator compare
CCNA_01624 +1.3 4.4 orotate phosphoribosyltransferase compare
CCNA_02341 +1.3 4.9 small heat shock protein compare
CCNA_00895 +1.3 7.7 hypothetical protein compare
CCNA_01580 +1.3 4.5 M15 superfamily membrane peptidase compare
CCNA_00217 +1.3 1.4 thiol:disulfide interchange protein DsbD compare
CCNA_00795 +1.3 1.7 two-component response regulator FixJ compare
CCNA_01690 +1.2 5.0 MAPEG family membrane protein compare
CCNA_02299 +1.2 1.8 cell division ATP-binding protein FtsE compare
CCNA_00521 +1.2 2.2 antitoxin protein compare
CCNA_01449 +1.2 2.0 fructose-1,6-bisphosphatase, FIG superfamily compare
CCNA_02775 +1.2 3.8 hypothetical protein compare
CCNA_02040 +1.2 2.6 phosphoserine phosphatase compare
CCNA_00675 +1.2 5.1 VapC-like PIN domain ribonuclease compare
CCNA_03123 +1.2 8.2 ArsR-family transcriptional regulator compare
CCNA_01505 +1.2 4.1 hypothetical protein compare
CCNA_02586 +1.2 7.7 phosphoribosylformylglycinamidine synthase II compare
CCNA_03643 +1.2 2.4 succinate dehydrogenase membrane anchor subunit compare
CCNA_01730 +1.2 7.9 amidophosphoribosyltransferase compare
CCNA_00778 +1.2 7.9 GTP-binding protein TypA/BipA compare
CCNA_01237 +1.2 1.6 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Vancomycin Hydrochloride Hydrate in Caulobacter crescentus NA1000

For stress Vancomycin Hydrochloride Hydrate across organisms