Experiment set4IT033 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Fusidic acid sodium salt 0.004 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS10255 -7.1 -4.9 chromosomal replication initiator protein DnaA compare
BBR_RS13805 -4.7 -4.5 hypothetical protein compare
BBR_RS10620 -4.4 -5.3 phosphoprotein phosphatase compare
BBR_RS12545 -3.7 -5.7 DUF4012 domain-containing protein compare
BBR_RS18565 -3.2 -2.2 CHAP domain-containing protein compare
BBR_RS16750 -3.0 -2.9 ParA family protein compare
BBR_RS10625 -2.9 -2.5 FHA domain-containing protein compare
BBR_RS13070 -2.8 -2.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS15070 -2.7 -5.2 endolytic transglycosylase MltG compare
BBR_RS19125 -2.6 -9.4 hypothetical protein compare
BBR_RS12235 -2.5 -1.9 hypothetical protein compare
BBR_RS19160 -2.5 -2.4 phosphate ABC transporter permease subunit PstC compare
BBR_RS14540 -2.5 -3.3 Na+/H+ antiporter NhaA compare
BBR_RS13300 -2.4 -2.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS15425 -2.4 -3.6 aspartate carbamoyltransferase compare
BBR_RS16955 -2.4 -3.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS20465 -2.4 -8.6 chromosome partitioning protein compare
BBR_RS13030 -2.2 -1.5 cell division ATP-binding protein FtsE compare
BBR_RS16490 -2.2 -6.1 polyprenyl synthase compare
BBR_RS20460 -2.2 -5.3 chromosome partitioning protein ParB compare
BBR_RS19815 -2.1 -16.3 ABC transporter permease compare
BBR_RS14190 -2.1 -8.9 transcriptional regulator compare
BBR_RS14240 -2.1 -6.4 1,4-alpha-glucan branching protein GlgB compare
BBR_RS14265 -2.0 -5.9 Solute-binding protein of ABC transporter system for metals compare
BBR_RS19120 -2.0 -8.8 helicase compare
BBR_RS11720 -2.0 -4.9 DUF2469 domain-containing protein compare
BBR_RS19760 -1.9 -2.0 polysaccharide ABC transporter ATPase compare
BBR_RS16625 -1.9 -5.6 DUF3710 domain-containing protein compare
BBR_RS16430 -1.9 -3.9 nucleotide pyrophosphatase compare
BBR_RS19820 -1.9 -14.0 ATP-binding protein of ABC transporter system compare
BBR_RS13035 -1.9 -1.3 ABC transporter permease compare
BBR_RS14215 -1.8 -3.2 peptidase compare
BBR_RS12310 -1.8 -2.2 signal recognition particle protein compare
BBR_RS10940 -1.8 -11.6 DedA family protein compare
BBR_RS16135 -1.7 -3.0 peptide deformylase compare
BBR_RS15455 -1.6 -2.2 orotate phosphoribosyltransferase compare
BBR_RS18690 -1.6 -5.9 diacylglycerol kinase compare
BBR_RS17495 -1.6 -8.5 DUF58 domain-containing protein compare
BBR_RS17640 -1.6 -2.0 DNA-directed RNA polymerase subunit omega compare
BBR_RS13635 -1.6 -7.1 carbamoyl-phosphate synthase large subunit compare
BBR_RS13630 -1.6 -5.4 carbamoyl-phosphate synthase small subunit compare
BBR_RS14205 -1.6 -2.5 hypothetical protein compare
BBR_RS16950 -1.5 -2.5 hypothetical protein compare
BBR_RS16985 -1.5 -3.2 transcriptional repressor LexA compare
BBR_RS18180 -1.5 -7.6 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS12375 -1.5 -1.7 pantetheine-phosphate adenylyltransferase compare
BBR_RS17510 -1.5 -6.3 VWA domain-containing protein compare
BBR_RS15440 -1.5 -3.1 orotidine-5'-phosphate decarboxylase compare
BBR_RS17515 -1.5 -6.2 hypothetical protein compare
BBR_RS17500 -1.4 -6.7 hypothetical protein compare
BBR_RS15845 -1.4 -1.1 hypothetical protein compare
BBR_RS21015 -1.4 -1.3 hypothetical protein compare
BBR_RS14275 -1.3 -1.9 30S ribosomal protein S1 compare
BBR_RS12605 -1.3 -3.6 glycosyltransferase family 2 protein compare
BBR_RS16640 -1.3 -3.4 ABC transporter permease compare
BBR_RS16275 -1.3 -1.9 leucine--tRNA ligase compare
BBR_RS19640 -1.3 -1.2 phosphoesterase compare
BBR_RS20980 -1.3 -1.2 hypothetical protein compare
BBR_RS17135 -1.3 -1.1 RluA family pseudouridine synthase compare
BBR_RS18220 -1.3 -7.2 glycosyltransferase family 2 protein compare
BBR_RS19070 -1.2 -1.2 50S ribosomal protein L33 compare
BBR_RS16905 -1.2 -4.0 hypothetical protein compare
BBR_RS14130 -1.2 -1.3 septum formation initiator family protein compare
BBR_RS19465 -1.2 -3.1 ribonuclease E/G compare
BBR_RS11185 -1.1 -2.8 type I DNA topoisomerase compare
BBR_RS11175 -1.1 -7.4 penicillin-binding protein compare
BBR_RS15050 -1.1 -2.2 DUF948 domain-containing protein compare
BBR_RS16965 -1.1 -0.7 ATP-dependent DNA helicase compare
BBR_RS19395 -1.1 -1.5 hypothetical protein compare
BBR_RS20435 -1.1 -1.0 CCA tRNA nucleotidyltransferase compare
BBR_RS12045 -1.1 -2.1 hypothetical protein compare
BBR_RS11540 -1.1 -2.2 DUF1727 domain-containing protein compare
BBR_RS17490 -1.1 -7.5 MoxR family ATPase compare
BBR_RS15760 -1.0 -3.1 MerR family transcriptional regulator compare
BBR_RS19740 -1.0 -9.1 DUF2142 domain-containing protein compare
BBR_RS12305 -1.0 -4.6 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS11595 -1.0 -2.5 50S ribosomal protein L9 compare
BBR_RS10755 -1.0 -3.6 adenylosuccinate synthase compare
BBR_RS18050 -1.0 -2.1 threonylcarbamoyl-AMP synthase compare
BBR_RS15055 -1.0 -1.8 hypothetical protein compare
BBR_RS16960 -1.0 -1.6 transcriptional regulator MraZ compare
BBR_RS17505 -1.0 -6.5 VWA domain-containing protein compare
BBR_RS15650 -1.0 -1.7 Holliday junction resolvase compare
BBR_RS16020 -1.0 -2.1 hypothetical protein compare
BBR_RS19450 -1.0 -0.9 GTPase ObgE compare
BBR_RS14765 -0.9 -1.6 hypothetical protein compare
BBR_RS17440 -0.9 -1.8 DUF3027 domain-containing protein compare
BBR_RS17680 -0.9 -2.4 hypothetical protein compare
BBR_RS18215 -0.9 -5.0 AI-2E family transporter compare
BBR_RS13640 -0.9 -4.0 orotidine-5'-phosphate decarboxylase compare
BBR_RS16425 -0.9 -1.7 DUF3071 domain-containing protein compare
BBR_RS16400 -0.9 -1.1 hypothetical protein compare
BBR_RS11970 -0.9 -1.3 Phage transcriptional regulator compare
BBR_RS20455 -0.9 -4.0 thioredoxin-disulfide reductase compare
BBR_RS11590 -0.9 -0.8 30S ribosomal protein S18 compare
BBR_RS11180 -0.8 -6.6 phosphatase PAP2 family protein compare
BBR_RS19155 -0.8 -4.9 phosphate ABC transporter, permease protein PstA compare
BBR_RS15435 -0.8 -2.5 dihydroorotase compare
BBR_RS15785 -0.8 -1.2 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS19755 -0.8 -5.4 glycosyl transferase compare
BBR_RS17040 -0.8 -3.3 hypothetical protein compare
BBR_RS15680 -0.8 -3.6 succinate--CoA ligase subunit alpha compare
BBR_RS14200 -0.8 -1.9 WhiB family transcriptional regulator compare
BBR_RS15655 -0.8 -2.5 Holliday junction branch migration protein RuvA compare
BBR_RS13490 -0.8 -1.2 30S ribosomal protein S7 compare
BBR_RS17415 -0.8 -1.4 hypothetical protein compare
BBR_RS20415 -0.8 -6.6 G5 domain-containing protein compare
BBR_RS14615 -0.8 -4.3 histidine kinase compare
BBR_RS17155 -0.8 -1.0 cell division protein SepF compare
BBR_RS16255 -0.8 -1.5 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS15860 -0.8 -1.0 DUF2316 domain-containing protein compare
BBR_RS15450 -0.7 -2.6 dihydroorotate dehydrogenase compare
BBR_RS18735 -0.7 -3.5 hypothetical protein compare
BBR_RS18795 -0.7 -2.0 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS14230 -0.7 -2.7 HAMP domain-containing histidine kinase compare
BBR_RS13370 -0.7 -1.8 phosphoribosylamine--glycine ligase compare
BBR_RS15805 -0.7 -3.1 prolipoprotein diacylglyceryl transferase compare
BBR_RS12940 -0.7 -4.9 hypothetical protein compare
BBR_RS15685 -0.7 -4.9 hypothetical protein compare
BBR_RS14290 -0.7 -3.0 TerC family protein compare
BBR_RS17295 -0.7 -2.6 RNA-binding protein compare
BBR_RS19260 -0.7 -5.6 hypothetical protein compare
BBR_RS19355 -0.7 -1.0 tRNA-Gly compare
BBR_RS10580 -0.7 -0.8 septation inhibitor protein compare
BBR_RS18035 -0.7 -2.2 oligoribonuclease compare
BBR_RS19170 -0.6 -5.4 DNA-binding response regulator compare
BBR_RS19190 -0.6 -3.1 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS19540 -0.6 -1.4 homoserine dehydrogenase compare
BBR_RS15090 -0.6 -0.8 type II 3-dehydroquinate dehydratase compare
BBR_RS10660 -0.6 -5.2 esterase compare
BBR_RS17480 -0.6 -2.4 hypothetical protein compare
BBR_RS19520 -0.6 -2.9 DUF1778 domain-containing protein compare
BBR_RS15880 -0.6 -1.7 hypothetical protein compare
BBR_RS12985 -0.6 -3.8 MFS transporter compare
BBR_RS20475 -0.6 -5.3 KH domain-containing protein compare
BBR_RS13820 -0.6 -1.1 ATP-binding protein compare
BBR_RS21170 -0.6 -3.9 membrane protein insertion efficiency factor YidD compare
BBR_RS16610 -0.6 -2.5 hypothetical protein compare
BBR_RS14140 -0.6 -0.9 Ppx/GppA family phosphatase compare
BBR_RS13420 -0.6 -2.0 DUF4230 domain-containing protein compare
BBR_RS18120 -0.6 -1.6 hypothetical protein compare
BBR_RS15660 -0.6 -2.1 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS13980 -0.6 -3.0 HD domain-containing protein compare
BBR_RS19435 -0.6 -1.1 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS16655 -0.6 -2.8 tyrosine recombinase XerC compare
BBR_RS17290 -0.6 -2.4 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS12380 -0.6 -2.4 DUF3039 domain-containing protein compare
BBR_RS13720 -0.5 -3.0 hypothetical protein compare
BBR_RS18635 -0.5 -2.9 PspC domain-containing protein compare
BBR_RS13525 -0.5 -1.9 CrcB family protein compare
BBR_RS13945 -0.5 -1.9 Txe/YoeB family addiction module toxin compare
BBR_RS12365 -0.5 -2.5 DUF177 domain-containing protein compare
BBR_RS14280 -0.5 -1.7 dephospho-CoA kinase compare
BBR_RS20400 -0.5 -4.9 serine/threonine protein kinase compare
BBR_RS14210 -0.5 -0.3 hypothetical protein compare
BBR_RS16635 -0.5 -1.2 ABC transporter ATP-binding protein compare
BBR_RS19095 -0.5 -4.1 magnesium transporter compare
BBR_RS16530 -0.5 -2.3 recombinase RecA compare
BBR_RS10915 -0.5 -2.8 MerR family DNA-binding transcriptional regulator compare
BBR_RS20450 -0.5 -4.5 murein biosynthesis integral membrane protein MurJ compare
BBR_RS10265 -0.5 -3.4 DNA replication and repair protein RecF compare
BBR_RS20775 -0.5 -1.2 DUF4230 domain-containing protein compare
BBR_RS20420 -0.5 -2.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS17460 -0.5 -2.5 TPM domain-containing protein compare
BBR_RS20955 -0.5 -0.6 hypothetical protein compare
BBR_RS19325 -0.5 -0.9 hypothetical protein compare
BBR_RS13455 -0.5 -1.4 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS13830 -0.5 -0.6 DUF4191 domain-containing protein compare
BBR_RS21030 -0.5 -2.3 hypothetical protein compare
BBR_RS15230 -0.5 -1.8 elongation factor 4 compare
BBR_RS12810 -0.5 -3.2 hypothetical protein compare
BBR_RS10570 -0.5 -2.0 hypothetical protein compare
BBR_RS16845 -0.5 -0.9 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS12590 -0.5 -1.3 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS19750 -0.5 -4.1 LTA synthase family protein compare
BBR_RS14070 -0.5 -1.9 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS14625 -0.4 -2.4 pyrroline-5-carboxylate reductase compare
BBR_RS15080 -0.4 -0.9 chorismate synthase compare
BBR_RS20700 -0.4 -1.1 ribulose phosphate epimerase compare
BBR_RS17465 -0.4 -2.1 WXG100 family type VII secretion target compare
BBR_RS11505 -0.4 -3.7 TetR/AcrR family transcriptional regulator compare
BBR_RS12555 -0.4 -2.4 protein-tyrosine-phosphatase compare
BBR_RS19100 -0.4 -3.6 N-acetyltransferase compare
BBR_RS14330 -0.4 -0.5 glycogen debranching enzyme GlgX compare
BBR_RS14505 -0.4 -1.4 hypothetical protein compare
BBR_RS18725 -0.4 -1.0 ribonuclease HI compare
BBR_RS16540 -0.4 -1.8 XRE family transcriptional regulator compare
BBR_RS16090 -0.4 -2.2 phosphoribosyl-AMP cyclohydrolase compare
BBR_RS11470 -0.4 -0.6 6-phosphogluconolactonase compare
BBR_RS21100 -0.4 -1.0 hypothetical protein compare
BBR_RS11240 -0.4 -0.8 GtrA family protein compare
BBR_RS19915 -0.4 -2.8 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
BBR_RS12725 -0.4 -2.1 hypothetical protein compare
BBR_RS10615 -0.4 -2.1 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS15130 -0.4 -1.2 metal-sulfur cluster assembly factor compare
BBR_RS12335 -0.4 -2.2 PIN domain-containing protein compare
BBR_RS12980 -0.4 -2.9 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS21035 -0.4 -1.7 AMMECR1 domain-containing protein compare
BBR_RS12975 -0.4 -2.8 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS12370 -0.4 -0.5 cell division protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Fusidic acid sodium salt across organisms