Experiment set4IT032 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

200 most detrimental genes:

  gene name fitness t score description  
LRK54_RS11115 +9.8 92.7 TonB-dependent receptor compare
LRK54_RS15015 +5.4 40.3 Ppx/GppA family phosphatase compare
LRK54_RS11745 +5.2 40.1 ribonuclease PH compare
LRK54_RS09280 +5.0 48.9 TonB-dependent receptor compare
LRK54_RS14480 +4.7 18.9 response regulator transcription factor compare
LRK54_RS02040 +4.3 36.8 transcription-repair coupling factor compare
LRK54_RS07060 +3.9 31.6 DedA family protein compare
LRK54_RS14475 +3.6 25.6 sensor histidine kinase compare
LRK54_RS16945 +3.4 16.0 sigma-E factor negative regulatory protein compare
LRK54_RS05970 +3.4 16.9 hypothetical protein compare
LRK54_RS09180 +3.4 31.0 phosphomannomutase/phosphoglucomutase compare
LRK54_RS01035 +3.4 30.2 tRNA pseudouridine(55) synthase TruB compare
LRK54_RS06530 +3.1 28.7 carbohydrate kinase family protein compare
LRK54_RS01015 +3.1 27.2 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
LRK54_RS03015 +3.0 23.6 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK54_RS12980 +2.9 18.1 hypothetical protein compare
LRK54_RS05500 +2.9 9.9 hypothetical protein compare
LRK54_RS12165 +2.9 25.3 nucleoside permease compare
LRK54_RS02970 +2.8 8.8 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK54_RS01020 +2.8 16.8 pha synthase subunit protein compare
LRK54_RS11905 +2.8 25.8 efflux RND transporter permease subunit compare
LRK54_RS10085 +2.8 21.9 CDP-glycerol glycerophosphotransferase family protein compare
LRK54_RS12875 +2.8 15.8 RNA polymerase factor sigma-54 compare
LRK54_RS05990 +2.8 15.8 hypothetical protein compare
LRK54_RS12985 +2.8 16.6 inorganic phosphate transporter compare
LRK54_RS11900 +2.7 17.1 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS03040 +2.7 11.3 MtnX-like HAD-IB family phosphatase compare
LRK54_RS05685 +2.7 19.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
LRK54_RS07020 +2.6 3.3 ABC transporter permease compare
LRK54_RS02960 +2.6 20.7 ABC transporter permease compare
LRK54_RS01290 +2.6 17.7 glycosyltransferase family 9 protein compare
LRK54_RS02945 +2.6 17.3 response regulator compare
LRK54_RS02955 +2.5 11.1 efflux transporter outer membrane subunit compare
LRK54_RS05515 +2.5 23.4 adenylyl-sulfate kinase compare
LRK54_RS00635 +2.5 4.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS09215 +2.5 21.7 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS02975 +2.4 19.1 alpha/beta fold hydrolase compare
LRK54_RS04085 +2.4 18.5 HAMP domain-containing histidine kinase compare
LRK54_RS12150 +2.4 10.6 TonB-dependent receptor compare
LRK54_RS00425 +2.4 16.1 ATP-dependent Clp protease adapter ClpS compare
LRK54_RS02950 +2.4 19.8 sensor histidine kinase compare
LRK54_RS14995 +2.4 14.0 carbon storage regulator CsrA compare
LRK54_RS05665 +2.4 3.8 dTDP-glucose 4,6-dehydratase compare
LRK54_RS02440 +2.3 3.2 RNA polymerase-binding protein DksA compare
LRK54_RS05520 +2.3 18.8 sulfate adenylyltransferase subunit CysD compare
LRK54_RS14815 +2.3 15.3 beta-ketoacyl-ACP reductase compare
LRK54_RS06685 +2.1 17.9 TolC family outer membrane protein compare
LRK54_RS11120 +2.1 18.2 tetratricopeptide repeat-containing sulfotransferase family protein compare
LRK54_RS09175 +2.1 4.7 dUTP diphosphatase compare
LRK54_RS06785 +2.1 1.4 protein-disulfide reductase DsbD compare
LRK54_RS03005 +2.0 16.5 GNAT family N-acetyltransferase compare
LRK54_RS16150 +2.0 4.0 cell wall hydrolase compare
LRK54_RS15720 +2.0 2.4 ATP-binding cassette domain-containing protein compare
LRK54_RS05485 +2.0 16.8 serine hydrolase compare
LRK54_RS03035 +1.9 13.7 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK54_RS02900 +1.9 17.1 C40 family peptidase compare
LRK54_RS17205 +1.9 1.8 heavy metal translocating P-type ATPase compare
LRK54_RS15920 +1.9 15.6 oligopeptide transporter, OPT family compare
LRK54_RS07980 +1.9 3.4 nitrogen regulation protein NR(I) compare
LRK54_RS04630 +1.9 1.3 energy-dependent translational throttle protein EttA compare
LRK54_RS01280 +1.8 1.2 MBL fold metallo-hydrolase compare
LRK54_RS06490 +1.8 14.0 D-alanyl-D-alanine carboxypeptidase compare
LRK54_RS05710 +1.7 13.4 pyridoxal-phosphate dependent enzyme compare
LRK54_RS01720 +1.7 2.0 hydroxyacid dehydrogenase compare
LRK54_RS02100 +1.7 14.7 multidrug efflux RND transporter permease subunit compare
LRK54_RS11965 +1.6 5.3 Rieske 2Fe-2S domain-containing protein compare
LRK54_RS02095 +1.6 14.4 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS15175 +1.6 2.6 DUF1289 domain-containing protein compare
LRK54_RS17225 +1.6 1.5 cytochrome-c oxidase, cbb3-type subunit II compare
LRK54_RS10465 +1.6 13.0 M61 family metallopeptidase compare
LRK54_RS18105 +1.6 2.6 DNA oxidative demethylase AlkB compare
LRK54_RS15030 +1.6 10.3 phosphate regulon transcriptional regulator PhoB compare
LRK54_RS17760 +1.5 2.5 cation transporter compare
LRK54_RS01295 +1.5 2.3 DUF6165 family protein compare
LRK54_RS10790 +1.5 8.6 AI-2E family transporter compare
LRK54_RS05980 +1.5 1.0 ATP-binding protein compare
LRK54_RS11820 +1.5 12.5 citrate synthase compare
LRK54_RS05550 +1.5 1.0 FAD-binding protein compare
LRK54_RS04260 +1.5 5.5 pyrroline-5-carboxylate reductase compare
LRK54_RS13330 +1.5 7.0 hypothetical protein compare
LRK54_RS05530 +1.4 2.9 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK54_RS04025 +1.4 1.7 diacylglycerol kinase compare
LRK54_RS05660 +1.4 8.0 PLP-dependent aspartate aminotransferase family protein compare
LRK54_RS01135 +1.4 10.0 PilZ domain-containing protein compare
LRK54_RS03125 +1.4 1.0 preprotein translocase subunit YajC compare
LRK54_RS17905 +1.4 1.4 NfuA family Fe-S biogenesis protein compare
LRK54_RS16730 +1.4 0.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS06745 +1.4 6.3 mitochondrial fission ELM1 family protein compare
LRK54_RS13540 +1.3 1.5 flagellar biosynthetic protein FliO compare
LRK54_RS05655 +1.3 0.9 ABC transporter permease compare
LRK54_RS06425 +1.3 1.5 ribonucleoside-diphosphate reductase compare
LRK54_RS02570 +1.3 9.8 SDR family oxidoreductase compare
LRK54_RS00975 +1.3 5.2 twitching motility response regulator PilH compare
LRK54_RS15065 +1.3 9.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein compare
LRK54_RS04160 +1.3 4.7 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
LRK54_RS16155 +1.3 1.6 folate-binding protein compare
LRK54_RS04225 +1.3 8.7 hypothetical protein compare
LRK54_RS10050 +1.3 9.7 glutaminyl-peptide cyclotransferase compare
LRK54_RS03675 +1.3 0.9 redox-regulated ATPase YchF compare
LRK54_RS00695 +1.3 1.5 methylisocitrate lyase compare
LRK54_RS17215 +1.3 0.9 cytochrome-c oxidase, cbb3-type subunit III compare
LRK54_RS04100 +1.2 1.6 ATP-binding cassette domain-containing protein compare
LRK54_RS05510 +1.2 7.2 glycine cleavage system aminomethyltransferase GcvT compare
LRK54_RS13780 +1.2 5.3 glutathione S-transferase N-terminal domain-containing protein compare
LRK54_RS05650 +1.2 0.9 ABC transporter ATP-binding protein compare
LRK54_RS15025 +1.2 5.0 phosphate regulon sensor histidine kinase PhoR compare
LRK54_RS05810 +1.2 2.2 membrane protein compare
LRK54_RS16990 +1.2 6.5 hypothetical protein compare
LRK54_RS13845 +1.2 11.6 TonB-dependent receptor compare
LRK54_RS04030 +1.2 9.6 oligopeptide:H+ symporter compare
LRK54_RS02070 +1.2 0.8 acyl-CoA dehydrogenase family protein compare
LRK54_RS07220 +1.2 4.8 thiol:disulfide interchange protein DsbA/DsbL compare
LRK54_RS17270 +1.2 0.8 DNA translocase FtsK compare
LRK54_RS02475 +1.2 7.5 TRZ/ATZ family hydrolase compare
LRK54_RS16720 +1.2 5.3 trigger factor compare
LRK54_RS00520 +1.2 9.9 aminomethyl-transferring glycine dehydrogenase compare
LRK54_RS04305 +1.2 1.9 shikimate kinase compare
LRK54_RS07125 +1.1 7.1 cytochrome c oxidase subunit II compare
LRK54_RS01385 +1.1 6.9 metalloregulator ArsR/SmtB family transcription factor compare
LRK54_RS09275 +1.1 7.6 helix-turn-helix domain-containing protein compare
LRK54_RS01160 +1.1 8.1 endolytic transglycosylase MltG compare
LRK54_RS16640 +1.1 3.7 tRNA pseudouridine(13) synthase TruD compare
LRK54_RS05285 +1.1 9.3 APC family permease compare
LRK54_RS02910 +1.1 9.9 M20 family metallopeptidase compare
LRK54_RS09395 +1.1 1.3 FecR domain-containing protein compare
LRK54_RS11855 +1.1 9.3 type IV pilus secretin PilQ compare
LRK54_RS01285 +1.1 2.3 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS11835 +1.1 8.5 pilus assembly protein PilM compare
LRK54_RS11850 +1.1 8.5 pilus assembly protein PilP compare
LRK54_RS11175 +1.1 2.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS08575 +1.1 4.1 diphosphomevalonate decarboxylase compare
LRK54_RS03945 +1.1 9.0 type IV-A pilus assembly ATPase PilB compare
LRK54_RS02855 +1.1 1.5 type I restriction-modification system subunit M compare
LRK54_RS12030 +1.1 6.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
LRK54_RS05985 +1.1 0.7 response regulator transcription factor compare
LRK54_RS04615 +1.1 3.6 transcriptional regulator NrdR compare
LRK54_RS02490 +1.1 7.9 EAL domain-containing protein compare
LRK54_RS13425 +1.0 2.4 flagellar basal-body rod protein FlgF compare
LRK54_RS11125 +1.0 4.3 sulfotransferase compare
LRK54_RS12580 +1.0 2.0 hypothetical protein compare
LRK54_RS16760 +1.0 6.5 transglycosylase SLT domain-containing protein compare
LRK54_RS03290 +1.0 0.7 RIP metalloprotease RseP compare
LRK54_RS08750 +1.0 1.4 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS04710 +1.0 1.4 glycosyltransferase family 2 protein compare
LRK54_RS09820 +1.0 7.5 cell division protein ZapE compare
LRK54_RS02215 +1.0 6.0 GspH/FimT family pseudopilin compare
LRK54_RS02535 +1.0 2.5 50S ribosomal protein L9 compare
LRK54_RS11840 +1.0 7.0 PilN domain-containing protein compare
LRK54_RS18060 +1.0 0.9 polysaccharide biosynthesis protein compare
LRK54_RS17005 +1.0 5.5 CYTH domain-containing protein compare
LRK54_RS05040 +1.0 4.5 response regulator compare
LRK54_RS07205 +0.9 2.1 hypothetical protein compare
LRK54_RS11845 +0.9 7.0 type 4a pilus biogenesis protein PilO compare
LRK54_RS05535 +0.9 1.9 glycosyltransferase family 2 protein compare
LRK54_RS04285 +0.9 6.5 kinase compare
LRK54_RS14675 +0.9 2.6 YajQ family cyclic di-GMP-binding protein compare
LRK54_RS05765 +0.9 5.2 fructose-bisphosphate aldolase class I compare
LRK54_RS16255 +0.9 1.2 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS17230 +0.9 1.9 cytochrome-c oxidase, cbb3-type subunit I compare
LRK54_RS11450 +0.9 5.1 transcriptional repressor AgaR compare
LRK54_RS01800 +0.9 0.9 dCTP deaminase compare
LRK54_RS05505 +0.9 4.4 glycine cleavage system protein GcvH compare
LRK54_RS08200 +0.9 2.5 nucleotidyltransferase domain-containing protein compare
LRK54_RS12670 +0.9 1.2 glycosyltransferase compare
LRK54_RS00395 +0.9 1.9 prephenate dehydratase compare
LRK54_RS07130 +0.9 1.8 DUF2244 domain-containing protein compare
LRK54_RS03950 +0.9 6.7 type II secretion system F family protein compare
LRK54_RS14175 +0.9 2.4 hypothetical protein compare
LRK54_RS03405 +0.9 3.4 ribonuclease G compare
LRK54_RS04050 +0.9 1.7 glycoside hydrolase compare
LRK54_RS16755 +0.9 0.9 SurA N-terminal domain-containing protein compare
LRK54_RS13755 +0.9 7.6 lytic transglycosylase domain-containing protein compare
LRK54_RS11570 +0.9 1.9 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS07065 +0.9 3.4 bile acid:sodium symporter compare
LRK54_RS03130 +0.9 3.3 tRNA guanosine(34) transglycosylase Tgt compare
LRK54_RS00885 +0.9 2.9 class II fumarate hydratase compare
LRK54_RS11985 +0.9 3.0 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
LRK54_RS08760 +0.9 0.6 transaldolase compare
LRK54_RS13440 +0.9 2.8 flagellar basal body P-ring protein FlgI compare
LRK54_RS01805 +0.8 2.7 NAD(P)H-dependent oxidoreductase compare
LRK54_RS15035 +0.8 1.2 M48 family metalloprotease compare
LRK54_RS14245 +0.8 1.9 hypothetical protein compare
LRK54_RS17690 +0.8 3.1 heavy metal response regulator transcription factor compare
LRK54_RS00675 +0.8 1.6 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS02025 +0.8 2.0 VOC family protein compare
LRK54_RS07945 +0.8 5.4 LytTR family DNA-binding domain-containing protein compare
LRK54_RS01995 +0.8 1.6 hypothetical protein compare
LRK54_RS00670 +0.8 1.0 OmpA family protein compare
LRK54_RS15040 +0.8 2.1 glutaredoxin 3 compare
LRK54_RS04395 +0.8 4.9 sigma-54 dependent transcriptional regulator compare
LRK54_RS07735 +0.8 4.9 metalloregulator ArsR/SmtB family transcription factor compare
LRK54_RS15500 +0.8 1.7 hypothetical protein compare
LRK54_RS10760 +0.8 1.9 DUF2249 domain-containing protein compare
LRK54_RS12595 +0.8 0.6 (2Fe-2S)-binding protein compare
LRK54_RS11105 +0.8 6.0 DegV family protein compare
LRK54_RS12460 +0.8 0.8 hypothetical protein compare
LRK54_RS11800 +0.8 5.5 RidA family protein compare
LRK54_RS06445 +0.8 4.6 leucyl aminopeptidase family protein compare
LRK54_RS05850 +0.8 5.4 4-hydroxyphenylpyruvate dioxygenase compare
LRK54_RS10090 +0.8 6.1 glycosyltransferase family 2 protein compare


Specific Phenotypes

For 18 genes in this experiment

For stress Chromium(III) Chloride Hexahydrate in Rhodanobacter denitrificans FW104-10B01

For stress Chromium(III) Chloride Hexahydrate across organisms