Experiment set4IT032 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

Group: stress
Media: R2A + Chromium(III) Chloride Hexahydrate (9.77E-02 mM)
Culturing: rhodanobacter_10B01_ML12, 96 deep-well microplate; 0.8 mL volume, Aerobic, at 30 (C), shaken=700 rpm
By: Hans Carlson and Trenton Owens on 22-Jun-21
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Growth plate: 1B B11

Specific Phenotypes

For 21 genes in this experiment

For stress Chromium(III) Chloride Hexahydrate in Rhodanobacter denitrificans FW104-10B01

For stress Chromium(III) Chloride Hexahydrate across organisms

SEED Subsystems

Subsystem #Specific
Cysteine Biosynthesis 2
Multidrug Resistance Efflux Pumps 2
Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) 2
Arsenic resistance 1
Cobalt-zinc-cadmium resistance 1
DNA-replication 1
O-Methyl Phosphoramidate Capsule Modification in Campylobacter 1
Queuosine-Archaeosine Biosynthesis 1
Sodium Hydrogen Antiporter 1
Ton and Tol transport systems 1
Transcription factors bacterial 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
sulfate activation for sulfonation 2 2 2
assimilatory sulfate reduction I 4 4 2
assimilatory sulfate reduction IV 4 3 2
assimilatory sulfate reduction III 3 3 1
assimilatory sulfate reduction II 3 1 1
sulfite oxidation III 3 1 1
superpathway of sulfate assimilation and cysteine biosynthesis 9 8 2
superpathway of sulfur amino acid biosynthesis (Saccharomyces cerevisiae) 10 8 2
selenate reduction 5 2 1
dissimilatory sulfate reduction I (to hydrogen sufide)) 5 1 1
superpathway of L-methionine biosynthesis (by sulfhydrylation) 12 11 2
superpathway of sulfur metabolism (Desulfocapsa sulfoexigens) 6 1 1
superpathway of thiosulfate metabolism (Desulfovibrio sulfodismutans) 6 1 1
superpathway of sulfide oxidation (phototrophic sulfur bacteria) 12 3 1
superpathway of seleno-compound metabolism 19 6 1