Experiment set4IT032 for Methanococcus maripaludis S2

Compare to:

H2 deepwell acetate and casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS03315 -3.0 -1.8 ferrous iron transport protein A compare
MMP_RS07845 -2.8 -3.3 LL-diaminopimelate aminotransferase compare
MMP_RS04605 -2.7 -6.7 cobalt ECF transporter T component CbiQ compare
MMP_RS00130 -2.6 -1.6 nickel-responsive transcriptional regulator NikR compare
MMP_RS03475 -2.5 -0.8 hypothetical protein compare
MMP_RS09020 -2.4 -2.1 hypothetical protein compare
MMP_RS04615 -2.2 -4.7 PDGLE domain-containing protein compare
MMP_RS00300 -2.2 -0.8 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS04620 -2.1 -13.8 cobalt transporter CbiM compare
MMP_RS05920 -2.1 -0.8 50S ribosomal protein L37e compare
MMP_RS01265 -2.1 -3.8 hypothetical protein compare
MMP_RS02900 -2.1 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS03600 -2.0 -2.7 triose-phosphate isomerase compare
MMP_RS07630 -1.9 -1.7 ATP-binding cassette domain-containing protein compare
MMP_RS06355 -1.9 -2.7 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS03015 -1.9 -9.6 GTP 3' 8-cyclase MoaA compare
MMP_RS05500 -1.9 -7.5 2-isopropylmalate synthase compare
MMP_RS06350 -1.9 -5.5 HesA/MoeB/ThiF family protein compare
MMP_RS02135 -1.8 -5.5 DUF5612 domain-containing protein compare
MMP_RS06285 -1.8 -2.5 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06400 -1.8 -1.9 4Fe-4S binding protein compare
MMP_RS06630 -1.8 -1.3 UPF0058 family protein compare
MMP_RS06730 -1.8 -2.4 phosphopantothenate/pantothenate synthetase compare
MMP_RS07730 -1.8 -2.3 pyruvate synthase subunit beta compare
MMP_RS07635 -1.8 -7.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01020 -1.8 -1.1 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS05425 -1.7 -5.0 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS08715 -1.7 -2.0 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01830 -1.7 -2.1 tRNA-Val compare
MMP_RS05515 -1.7 -7.4 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01455 -1.7 -9.3 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS06270 -1.6 -6.2 TIGR00300 family protein compare
MMP_RS07345 -1.6 -6.1 glycine synthesis protein GlyXL (from data) compare
MMP_RS03035 -1.6 -4.3 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS02010 -1.6 -9.9 PHP domain-containing protein compare
MMP_RS01325 -1.6 -1.9 dihydroneopterin aldolase family protein compare
MMP_RS03435 -1.6 -2.2 ketol-acid reductoisomerase compare
MMP_RS01225 -1.6 -3.9 DUF5379 domain-containing protein compare
MMP_RS03450 -1.6 -2.3 glycine synthesis protein GlyXS (from data) compare
MMP_RS02235 -1.5 -9.2 CBS domain-containing protein compare
MMP_RS08320 -1.5 -6.0 molybdopterin molybdotransferase MoeA compare
MMP_RS01795 -1.5 -1.8 methanogenesis marker 6 protein compare
MMP_RS05555 -1.5 -1.4 DUF4040 domain-containing protein compare
MMP_RS04215 -1.5 -7.5 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS08165 -1.5 -2.6 phosphoglycerate dehydrogenase compare
MMP_RS04500 -1.5 -10.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS01005 -1.4 -1.5 riboflavin synthase compare
MMP_RS01175 -1.4 -2.9 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS03025 -1.4 -3.6 molybdenum cofactor guanylyltransferase compare
MMP_RS07955 -1.4 -5.0 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS05060 -1.3 -8.4 AAA family ATPase compare
MMP_RS05265 -1.3 -2.1 2-isopropylmalate synthase compare
MMP_RS00735 -1.3 -4.1 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS01755 -1.3 -1.2 DUF2097 domain-containing protein compare
MMP_RS05090 -1.3 -7.1 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS05075 -1.3 -10.1 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS02885 -1.3 -10.3 molybdopterin biosynthesis protein compare
MMP_RS07545 -1.3 -1.1 HTH domain-containing protein compare
MMP_RS07380 -1.3 -2.1 transcription elongation factor Spt5 compare
MMP_RS08720 -1.3 -1.2 4Fe-4S binding protein compare
MMP_RS05100 -1.3 -10.2 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS04790 -1.3 -8.3 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS05080 -1.3 -7.9 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS08745 -1.3 -4.6 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06865 -1.3 -1.6 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS08330 -1.3 -5.2 NADH-quinone oxidoreductase subunit H compare
MMP_RS06625 -1.3 -2.0 DNA primase compare
MMP_RS05085 -1.3 -5.0 AAA family ATPase compare
MMP_RS03640 -1.2 -3.8 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS06375 -1.2 -4.4 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS07005 -1.2 -0.6 4Fe-4S binding protein compare
MMP_RS05540 -1.2 -3.6 hypothetical protein compare
MMP_RS03390 -1.2 -5.5 malate dehydrogenase compare
MMP_RS00900 -1.2 -1.4 50S ribosomal protein L39e compare
MMP_RS02355 -1.2 -2.3 30S ribosomal protein S27ae compare
MMP_RS05070 -1.2 -6.7 4Fe-4S dicluster domain-containing protein compare
MMP_RS06485 -1.2 -1.0 zinc ribbon domain-containing protein compare
MMP_RS01500 -1.1 -1.3 CBS domain-containing protein compare
MMP_RS06370 -1.1 -4.3 biotin synthase BioB compare
MMP_RS05930 -1.1 -2.0 3-isopropylmalate dehydratase large subunit compare
MMP_RS06105 -1.1 -6.2 hydrogenase maturation peptidase HycI compare
MMP_RS06295 -1.1 -4.8 methanogenesis marker 14 protein compare
MMP_RS08100 -1.1 -5.8 8-amino-7-oxononanoate synthase compare
MMP_RS00305 -1.1 -1.3 phosphoribosyl-ATP diphosphatase compare
MMP_RS07575 -1.1 -2.7 RNA ligase partner protein compare
MMP_RS08105 -1.1 -5.6 6-carboxyhexanoate--CoA ligase compare
MMP_RS04775 -1.1 -3.2 adenosylhomocysteinase compare
MMP_RS03910 -1.1 -2.0 hypothetical protein compare
MMP_RS01385 -1.1 -0.5 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00695 -1.1 -0.8 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS05095 -1.1 -6.7 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS06700 -1.1 -7.0 hypothetical protein compare
MMP_RS08210 -1.1 -1.4 phosphatidylglycerophosphatase A compare
MMP_RS07750 -1.1 -4.2 DUF357 domain-containing protein compare
MMP_RS05055 -1.0 -7.9 DUF166 domain-containing protein compare
MMP_RS07185 -1.0 -6.9 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS08095 -1.0 -5.3 dethiobiotin synthase compare
MMP_RS06495 -1.0 -2.3 YkgJ family cysteine cluster protein compare
MMP_RS01220 -1.0 -4.3 hypothetical protein compare
MMP_RS03700 -1.0 -5.0 sodium:proton antiporter compare
MMP_RS06770 -1.0 -6.1 DHH family phosphoesterase compare
MMP_RS07195 -1.0 -6.4 M20 family metallo-hydrolase compare
MMP_RS07645 -1.0 -5.1 aldehyde dehydrogenase family protein compare
MMP_RS06680 -1.0 -5.3 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05065 -1.0 -3.0 CooT family nickel-binding protein compare
MMP_RS06340 -1.0 -5.3 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS06230 -1.0 -1.7 helix-turn-helix domain-containing protein compare
MMP_RS01800 -1.0 -2.7 TIGR00303 family protein compare
MMP_RS07735 -1.0 -0.7 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS07600 -1.0 -1.5 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS00685 -0.9 -3.5 2-phospho-L-lactate guanylyltransferase compare
MMP_RS03225 -0.9 -2.9 acetolactate decarboxylase compare
MMP_RS06475 -0.9 -3.9 FAD-dependent oxidoreductase compare
MMP_RS00725 -0.9 -4.5 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS00520 -0.9 -1.3 RNA polymerase Rpb4 family protein compare
MMP_RS00770 -0.9 -3.5 hypothetical protein compare
MMP_RS08350 -0.9 -0.8 hypothetical protein compare
MMP_RS06705 -0.9 -3.1 formate/nitrite transporter family protein compare
MMP_RS03445 -0.9 -0.7 methanogenesis marker 17 protein compare
MMP_RS02245 -0.9 -2.4 hypothetical protein compare
MMP_RS03140 -0.9 -5.9 hypothetical protein compare
MMP_RS03145 -0.9 -3.7 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS02875 -0.9 -6.6 chorismate pyruvate-lyase family protein compare
MMP_RS03420 -0.9 -2.3 acetolactate synthase small subunit compare
MMP_RS02495 -0.9 -2.0 hypothetical protein compare
MMP_RS07355 -0.9 -0.8 transcription factor S compare
MMP_RS06885 -0.9 -2.2 50S ribosome-binding GTPase compare
MMP_RS05535 -0.9 -3.4 hypothetical protein compare
MMP_RS00810 -0.9 -4.4 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS02195 -0.9 -2.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS07710 -0.9 -5.2 cell division protein FtsZ compare
MMP_RS08725 -0.9 -1.5 Ni/Fe hydrogenase subunit alpha compare
MMP_RS08820 -0.9 -3.9 hypothetical protein compare
MMP_RS03155 -0.9 -3.7 precorrin-6A reductase compare
MMP_RS08785 -0.9 -0.8 RNA-protein complex protein Nop10 compare
MMP_RS07525 -0.9 -4.8 4Fe-4S binding protein compare
MMP_RS06895 -0.9 -1.2 selenocysteine-specific translation elongation factor compare
MMP_RS00315 -0.9 -4.7 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS02935 -0.9 -3.7 A24 family peptidase compare
MMP_RS05815 -0.9 -1.4 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS02240 -0.8 -2.2 methanogenesis marker 7 protein compare
MMP_RS00515 -0.8 -0.7 DUF655 domain-containing protein compare
MMP_RS04850 -0.8 -6.5 UPF0254 family protein compare
MMP_RS03535 -0.8 -2.3 helix-turn-helix transcriptional regulator compare
MMP_RS03585 -0.8 -1.9 Hsp20/alpha crystallin family protein compare
MMP_RS03205 -0.8 -0.8 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS02170 -0.8 -3.1 CBS domain-containing protein compare
MMP_RS08600 -0.8 -1.8 flagellar protein D compare
MMP_RS07540 -0.8 -2.5 CBS domain-containing protein compare
MMP_RS01260 -0.8 -2.7 HDIG domain-containing protein compare
MMP_RS07425 -0.8 -3.2 GTP-binding protein compare
MMP_RS00750 -0.8 -1.4 fumarate hydratase compare
MMP_RS01545 -0.8 -0.7 CBS domain-containing protein compare
MMP_RS05295 -0.7 -4.8 minichromosome maintenance protein MCM compare
MMP_RS03350 -0.7 -2.0 winged helix-turn-helix domain-containing protein compare
MMP_RS00895 -0.7 -2.4 hypothetical protein compare
MMP_RS08790 -0.7 -1.1 translation initiation factor IF-2 subunit alpha compare
MMP_RS04785 -0.7 -5.3 hypothetical protein compare
MMP_RS06315 -0.7 -0.6 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS00535 -0.7 -2.1 TIGR00375 family protein compare
MMP_RS00295 -0.7 -1.4 gamma carbonic anhydrase family protein compare
MMP_RS04685 -0.7 -1.6 DUF126 domain-containing protein compare
MMP_RS01720 -0.7 -1.0 replication factor C large subunit compare
MMP_RS07720 -0.7 -4.7 4Fe-4S binding protein compare
MMP_RS07695 -0.7 -2.8 DUF3236 domain-containing protein compare
MMP_RS01540 -0.7 -1.8 DUF504 domain-containing protein compare
MMP_RS02175 -0.7 -0.5 DUF1611 domain-containing protein compare
MMP_RS05925 -0.7 -1.8 small nuclear ribonucleoprotein compare
MMP_RS07445 -0.7 -2.8 helix-turn-helix domain-containing protein compare
MMP_RS00720 -0.7 -3.3 metal-dependent hydrolase compare
MMP_RS08360 -0.7 -2.1 hypothetical protein compare
MMP_RS06685 -0.7 -3.9 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS01725 -0.7 -2.1 class I SAM-dependent methyltransferase family protein compare
MMP_RS08240 -0.7 -2.7 methanogenesis marker 16 metalloprotein compare
MMP_RS00985 -0.7 -2.3 CDC48 family AAA ATPase compare
MMP_RS07755 -0.7 -0.7 DUF555 domain-containing protein compare
MMP_RS08355 -0.7 -3.1 Na(+)/H(+) antiporter subunit B compare
MMP_RS01610 -0.7 -1.8 hypothetical protein compare
MMP_RS06020 -0.7 -2.3 archaeoflavoprotein AfpA compare
MMP_RS03555 -0.7 -2.9 transcriptional regulator compare
MMP_RS05950 -0.7 -4.1 nickel-dependent hydrogenase large subunit compare
MMP_RS08445 -0.7 -2.1 DUF2099 family protein compare
MMP_RS08645 -0.7 -2.8 UPF0179 family protein compare
MMP_RS03400 -0.6 -0.9 archease compare
MMP_RS07385 -0.6 -1.5 protein translocase SEC61 complex subunit gamma compare
MMP_RS08300 -0.6 -0.5 metal-sulfur cluster assembly factor compare
MMP_RS00570 -0.6 -1.8 protein-L-isoaspartate O-methyltransferase compare
MMP_RS00060 -0.6 -1.0 3-dehydroquinate synthase II compare
MMP_RS02280 -0.6 -0.5 DUF211 domain-containing protein compare
MMP_RS00115 -0.6 -3.7 radical SAM protein compare
MMP_RS08335 -0.6 -3.0 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS02130 -0.6 -3.1 zinc metalloprotease HtpX compare
MMP_RS02045 -0.6 -1.0 tRNA-Met compare
MMP_RS08595 -0.6 -0.6 flagellar protein C compare
MMP_RS03250 -0.6 -1.9 MJ1244 family protein compare
MMP_RS00830 -0.6 -0.7 purine phosphoribosyltransferase family protein compare
MMP_RS03095 -0.6 -2.9 diphthine synthase compare
MMP_RS08345 -0.6 -4.2 4Fe-4S binding protein compare
MMP_RS06345 -0.6 -3.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS05975 -0.6 -0.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Mc_vitamins across organisms