Experiment set4IT032 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with syringaldehyde 1 mM

200 most important genes:

  gene name fitness t score description  
Ga0059261_4186 -4.8 -3.3 Phosphopantetheine attachment site compare
Ga0059261_4187 -2.6 -11.5 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_4188 -2.5 -7.5 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_1860 -2.5 -3.2 Transposase compare
Ga0059261_0171 -2.2 -2.5 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_2189 -2.0 -7.6 uncharacterized domain 1 compare
Ga0059261_3615 -2.0 -2.7 hypothetical protein compare
Ga0059261_2707 -1.9 -7.4 fructose-1,6-bisphosphatase, class II compare
Ga0059261_3502 -1.8 -3.3 Fatty acid desaturase compare
Ga0059261_1369 -1.8 -9.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_2005 -1.8 -4.8 protoheme IX farnesyltransferase compare
Ga0059261_0175 -1.8 -7.5 heme exporter protein CcmC compare
Ga0059261_0172 -1.7 -8.1 Cytochrome c biogenesis factor compare
Ga0059261_0613 -1.7 -4.3 FecR family protein compare
Ga0059261_1507 -1.6 -3.3 deoxycytidine triphosphate deaminase compare
Ga0059261_1564 -1.6 -5.2 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
Ga0059261_1560 -1.5 -2.4 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Ga0059261_1696 -1.5 -4.5 Pyridine nucleotide-disulphide oxidoreductase/Reductase C-terminal compare
Ga0059261_2490 -1.5 -5.1 Small protein A (tmRNA-binding) compare
Ga0059261_0170 -1.5 -4.3 Uncharacterized protein involved in biosynthesis of c-type cytochromes compare
Ga0059261_1312 -1.4 -4.7 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Ga0059261_1370 -1.4 -7.4 Signal transduction histidine kinase compare
Ga0059261_0349 -1.4 -4.0 MarR family compare
Ga0059261_3488 -1.4 -1.9 Histidine kinase/HAMP domain compare
Ga0059261_1382 -1.4 -6.4 periplasmic serine protease, Do/DeqQ family compare
Ga0059261_1811 -1.3 -3.4 ATP:cob(I)alamin adenosyltransferase compare
Ga0059261_0664 -1.3 -2.3 pseudouridine synthase, RluA family compare
Ga0059261_1545 -1.3 -4.6 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_0650 -1.3 -2.1 Negative regulator of beta-lactamase expression compare
Ga0059261_2444 -1.2 -5.6 5-aminolevulinic acid synthase compare
Ga0059261_1562 -1.2 -5.5 Uncharacterized conserved protein compare
Ga0059261_2417 -1.2 -3.8 phytoene desaturase compare
Ga0059261_2286 -1.2 -5.2 Fe2+ transport system protein B compare
Ga0059261_2190 -1.2 -1.7 PTS IIA-like nitrogen-regulatory protein PtsN compare
Ga0059261_2285 -1.2 -2.3 Fe2+ transport system protein A compare
Ga0059261_0790 -1.2 -2.5 putative membrane protein insertion efficiency factor compare
Ga0059261_1870 -1.1 -5.7 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Ga0059261_1565 -1.1 -8.3 cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-) compare
Ga0059261_1869 -1.1 -4.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_1846 -1.1 -6.5 Xaa-Pro aminopeptidase compare
Ga0059261_0163 -1.1 -2.8 Major Facilitator Superfamily compare
Ga0059261_0204 -1.1 -3.4 protein RecA compare
Ga0059261_1909 -1.1 -5.5 MAF protein compare
Ga0059261_2179 -1.1 -6.7 Phospholipid N-methyltransferase compare
Ga0059261_3430 -1.0 -2.7 NADH:ubiquinone oxidoreductase 17.2 kD subunit compare
Ga0059261_3097 -1.0 -4.2 Calcineurin-like phosphoesterase compare
Ga0059261_1868 -1.0 -2.4 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_0083 -1.0 -1.6 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC 6.3.5.-) compare
Ga0059261_1335 -1.0 -3.4 Predicted ATPase compare
Ga0059261_1566 -1.0 -5.4 cytochrome o ubiquinol oxidase subunit II compare
Ga0059261_3101 -1.0 -3.0 nucleotide sugar dehydrogenase compare
Ga0059261_3341 -0.9 -4.7 ATP-dependent protease HslVU, peptidase subunit compare
Ga0059261_1071 -0.9 -3.0 hypothetical protein compare
Ga0059261_2191 -0.9 -4.5 ribosomal subunit interface protein compare
Ga0059261_2267 -0.9 -6.8 Predicted Rossmann fold nucleotide-binding protein compare
Ga0059261_1563 -0.9 -2.3 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
Ga0059261_3130 -0.9 -5.2 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_1339 -0.9 -1.7 hypothetical protein compare
Ga0059261_0037 -0.9 -5.9 hypothetical protein compare
Ga0059261_1605 -0.9 -4.8 transcriptional regulator, TetR family compare
Ga0059261_3637 -0.9 -1.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_1310 -0.9 -2.7 Predicted transcriptional regulators compare
Ga0059261_4012 -0.8 -1.7 AMP nucleosidase compare
Ga0059261_3211 -0.8 -5.1 hypothetical protein compare
Ga0059261_2021 -0.8 -6.5 Protein of unknown function (DUF2029) compare
Ga0059261_1360 -0.8 -5.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Ga0059261_2244 -0.8 -6.0 DNA polymerase I (EC 2.7.7.7) compare
Ga0059261_3103 -0.8 -2.8 Glycosyltransferase compare
Ga0059261_2501 -0.8 -5.0 C-terminal peptidase (prc) compare
Ga0059261_3871 -0.8 -2.2 formate dehydrogenase family accessory protein FdhD compare
Ga0059261_3119 -0.8 -2.5 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_1871 -0.8 -5.8 ABC transport permease subunit compare
Ga0059261_3859 -0.8 -2.2 MgtC family compare
Ga0059261_0448 -0.8 -1.7 hypothetical protein compare
Ga0059261_3191 -0.8 -4.0 Glycosyltransferases involved in cell wall biogenesis compare
Ga0059261_2181 -0.7 -5.7 penicillin-binding protein, 1A family compare
Ga0059261_2498 -0.7 -2.9 hypothetical protein compare
Ga0059261_3671 -0.7 -1.5 Citrate lyase beta subunit compare
Ga0059261_0159 -0.7 -4.3 Transcriptional regulator compare
Ga0059261_0493 -0.7 -1.4 hypothetical protein compare
Ga0059261_2684 -0.7 -1.9 hypothetical protein compare
Ga0059261_0950 -0.7 -2.1 Uncharacterized protein conserved in bacteria (DUF2336) compare
Ga0059261_3114 -0.7 -4.1 hypothetical protein compare
Ga0059261_3646 -0.7 -1.3 Uncharacterized stress protein (general stress protein 26) compare
Ga0059261_2458 -0.7 -4.1 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases compare
Ga0059261_2050 -0.7 -2.5 hypothetical protein compare
Ga0059261_2949 -0.7 -3.1 Uncharacterized protein, homolog of Cu resistance protein CopC compare
Ga0059261_1561 -0.7 -3.3 Signal transduction histidine kinase compare
Ga0059261_3512 -0.7 -0.8 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
Ga0059261_3127 -0.6 -3.3 hypothetical protein compare
Ga0059261_0245 -0.6 -1.4 pseudouridine synthase compare
Ga0059261_1217 -0.6 -2.5 MobA/MobL family compare
Ga0059261_2145 -0.6 -2.7 ribosome-binding factor A compare
Ga0059261_1293 -0.6 -4.7 (p)ppGpp synthetase, RelA/SpoT family compare
Ga0059261_2008 -0.6 -5.5 cytochrome c oxidase, subunit I compare
Ga0059261_1911 -0.6 -0.9 Thioredoxin-like proteins and domains compare
Ga0059261_0344 -0.6 -1.7 Molecular chaperone (small heat shock protein) compare
Ga0059261_3657 -0.6 -3.6 His Kinase A (phospho-acceptor) domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
Ga0059261_3612 -0.6 -4.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_2268 -0.6 -4.1 Cytochrome c2 compare
Ga0059261_1724 -0.6 -1.8 hypothetical protein compare
Ga0059261_2194 -0.6 -2.1 shikimate dehydrogenase (EC 1.1.1.25) (from data) compare
Ga0059261_3440 -0.6 -1.1 hypothetical protein compare
Ga0059261_2774 -0.6 -1.7 Transcription elongation factor compare
Ga0059261_0146 -0.6 -1.7 amidohydrolase, PncC family compare
Ga0059261_1601 -0.6 -1.4 protein-(glutamine-N5) methyltransferase, release factor-specific compare
Ga0059261_3190 -0.6 -4.7 3-isopropylmalate dehydrogenase compare
Ga0059261_2015 -0.6 -2.6 maleylacetoacetate isomerase compare
Ga0059261_1026 -0.6 -1.3 DNA repair protein RecN compare
Ga0059261_1612 -0.6 -1.0 hypothetical protein compare
Ga0059261_1050 -0.6 -1.2 hypothetical protein compare
Ga0059261_1547 -0.6 -3.6 Uncharacterized protein required for cytochrome oxidase assembly compare
Ga0059261_2418 -0.5 -2.3 lycopene cyclase compare
Ga0059261_3210 -0.5 -1.6 Organic radical activating enzymes compare
Ga0059261_3925 -0.5 -2.2 Transcriptional regulators compare
Ga0059261_3129 -0.5 -3.4 SLBB domain/Polysaccharide biosynthesis/export protein compare
Ga0059261_2514 -0.5 -4.2 phosphoenolpyruvate-protein phosphotransferase compare
Ga0059261_3595 -0.5 -2.3 Site-specific recombinase XerD compare
Ga0059261_3128 -0.5 -4.2 capsular exopolysaccharide family compare
Ga0059261_1484 -0.5 -1.9 hypothetical protein compare
Ga0059261_0494 -0.5 -1.6 ABC-type antimicrobial peptide transport system, ATPase component compare
Ga0059261_4001 -0.5 -2.7 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Ga0059261_3026 -0.5 -1.6 Cation efflux family compare
Ga0059261_1265 -0.5 -1.9 hypothetical protein compare
Ga0059261_3759 -0.5 -1.3 hypothetical protein compare
Ga0059261_0223 -0.5 -1.7 Peptidase inhibitor I78 family compare
Ga0059261_1417 -0.5 -1.3 transcriptional regulator, XRE family compare
Ga0059261_0827 -0.5 -1.5 hypothetical protein compare
Ga0059261_1951 -0.5 -2.1 NADPH-glutathione reductase (EC 1.8.1.7) compare
Ga0059261_0197 -0.5 -0.8 hypothetical protein compare
Ga0059261_3220 -0.5 -4.2 Cytochrome b subunit of the bc complex compare
Ga0059261_0069 -0.5 -2.4 tRNA dimethylallyltransferase compare
Ga0059261_0662 -0.5 -2.4 Truncated hemoglobins compare
Ga0059261_0321 -0.5 -1.0 hypothetical protein compare
Ga0059261_2013 -0.5 -3.7 signal peptidase I, bacterial type compare
Ga0059261_3939 -0.5 -2.3 transcriptional regulator, TetR family compare
Ga0059261_3926 -0.5 -4.0 L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) compare
Ga0059261_2929 -0.4 -1.1 oxygen-dependent methionine synthase, methyltransferase component MesD (from data) compare
Ga0059261_1017 -0.4 -2.5 tRNA-guanine transglycosylase compare
Ga0059261_3276 -0.4 -2.9 ABC-type multidrug transport system, ATPase and permease components compare
Ga0059261_0770 -0.4 -1.1 hypothetical protein compare
Ga0059261_2243 -0.4 -1.2 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_0445 -0.4 -2.0 hypothetical protein compare
Ga0059261_1986 -0.4 -2.4 Glycine/serine hydroxymethyltransferase compare
Ga0059261_2272 -0.4 -3.8 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Ga0059261_3865 -0.4 -2.9 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
Ga0059261_2350 -0.4 -1.3 hypothetical protein compare
Ga0059261_2612 -0.4 -1.7 Uncharacterized secreted protein compare
Ga0059261_3620 -0.4 -1.3 molybdenum cofactor biosynthesis protein A, bacterial compare
Ga0059261_0290 -0.4 -1.9 3-dehydroquinate dehydratase (EC 4.2.1.10) compare
Ga0059261_3938 -0.4 -2.9 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_0918 -0.4 -2.1 Phosphotransferase system, mannose/fructose-specific component IIA compare
Ga0059261_3877 -0.4 -0.9 hypothetical protein compare
Ga0059261_1057 -0.4 -2.0 hypothetical protein compare
Ga0059261_3156 -0.4 -1.7 peptidoglycan-associated lipoprotein compare
Ga0059261_2000 -0.4 -2.4 Uncharacterized conserved protein compare
Ga0059261_3219 -0.4 -2.0 ubiquinol-cytochrome c reductase, iron-sulfur subunit compare
Ga0059261_0751 -0.4 -3.1 DNA repair protein RadA compare
Ga0059261_1301 -0.4 -1.5 Methyltransferase domain compare
Ga0059261_1257 -0.4 -2.4 Uncharacterized iron-regulated protein compare
Ga0059261_2708 -0.4 -1.6 hypothetical protein compare
Ga0059261_2700 -0.4 -3.1 Putative Zn-dependent protease, contains TPR repeats compare
Ga0059261_3685 -0.4 -2.6 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_2213 -0.4 -1.9 Domain of unknown function (DUF3576) compare
Ga0059261_2271 -0.4 -2.7 branched-chain alpha-keto acid dehydrogenase E2 component (EC 2.3.1.168) compare
Ga0059261_2840 -0.4 -1.7 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_0201 -0.4 -3.0 Na+/H+-dicarboxylate symporters compare
Ga0059261_3979 -0.4 -1.4 elongation factor 4 compare
Ga0059261_0211 -0.4 -1.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_1190 -0.4 -2.0 hypothetical protein compare
Ga0059261_3896 -0.4 -1.0 integration host factor, beta subunit compare
Ga0059261_4068 -0.4 -2.1 Predicted membrane protein compare
Ga0059261_2164 -0.4 -2.8 Acyl-CoA dehydrogenases compare
Ga0059261_0246 -0.4 -0.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
Ga0059261_1287 -0.4 -2.6 poly(R)-hydroxyalkanoic acid synthase, class I compare
Ga0059261_1567 -0.4 -3.2 Arabinose efflux permease compare
Ga0059261_0059 -0.4 -0.8 Stress-induced morphogen (activity unknown) compare
Ga0059261_1001 -0.4 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
Ga0059261_2273 -0.4 -3.2 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit compare
Ga0059261_2548 -0.4 -0.8 tRNA compare
Ga0059261_0035 -0.4 -1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_0224 -0.4 -1.7 Exopolyphosphatase compare
Ga0059261_3064 -0.4 -1.3 hypothetical protein compare
Ga0059261_1145 -0.4 -0.9 flagella basal body P-ring formation protein FlgA compare
Ga0059261_0964 -0.4 -1.4 Superfamily II DNA and RNA helicases compare
Ga0059261_2680 -0.3 -0.7 hypothetical protein compare
Ga0059261_1928 -0.3 -1.5 Predicted permeases compare
Ga0059261_0258 -0.3 -1.9 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
Ga0059261_3221 -0.3 -2.7 Cytochrome c1 compare
Ga0059261_2534 -0.3 -1.7 3-hydroxyacyl-CoA dehydrogenase compare
Ga0059261_4055 -0.3 -2.5 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) compare
Ga0059261_2002 -0.3 -2.1 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Ga0059261_0690 -0.3 -0.8 Acetyltransferases compare
Ga0059261_2009 -0.3 -2.6 cytochrome c oxidase, subunit II compare
Ga0059261_2034 -0.3 -2.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_1408 -0.3 -1.0 Domain of unknown function (DUF4168) compare
Ga0059261_3216 -0.3 -1.5 Acetyltransferases compare
Ga0059261_2952 -0.3 -1.4 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_2416 -0.3 -2.0 TIGR00730 family protein compare
Ga0059261_1671 -0.3 -2.2 Uncharacterized protein, putative amidase compare


Specific Phenotypes

None in this experiment

For Sphingomonas koreensis DSMZ 15582 in stress experiments

For stress syringaldehyde across organisms