Experiment set4IT031 for Pseudomonas fluorescens SBW25-INTG
Growth at pH6 and carbon source D-Glucose
Group: pHMedia: soilextract_PNNL_Prosser_PlotA_B_20191220 + D-Glucose (10 mM) + Ammonium chloride (10 mM) + MES (40 mM), pH=6
Culturing: PseudoSBW25_INTG_ML3, 96 deep-well microplate; 1 mL volume, Aerobic, at 30 (C)
By: Joshua Elmore on 1/6/20
Specific Phenotypes
For 6 genes in this experiment
For pH D-Glucose in Pseudomonas fluorescens SBW25-INTG
For pH D-Glucose across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| High affinity phosphate transporter and control of PHO regulon | 2 |
| Phosphate metabolism | 2 |
| 2-Ketogluconate Utilization | 1 |
| Terminal cytochrome C oxidases | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| arsenite to oxygen electron transfer | 2 | 1 | 1 |
| arsenite to oxygen electron transfer (via azurin) | 3 | 1 | 1 |
| aerobic respiration II (cytochrome c) (yeast) | 4 | 3 | 1 |
| aerobic respiration I (cytochrome c) | 4 | 3 | 1 |
| glucose degradation (oxidative) | 5 | 5 | 1 |
| Fe(II) oxidation | 6 | 3 | 1 |