Experiment set4IT031 for Methanococcus maripaludis S2

Compare to:

H2 deepwell acetate and casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS03315 -2.6 -2.0 ferrous iron transport protein A compare
MMP_RS07845 -2.5 -3.9 LL-diaminopimelate aminotransferase compare
MMP_RS03435 -2.3 -2.6 ketol-acid reductoisomerase compare
MMP_RS03450 -2.1 -3.5 glycine synthesis protein GlyXS (from data) compare
MMP_RS04615 -2.0 -5.1 PDGLE domain-containing protein compare
MMP_RS04605 -2.0 -5.0 cobalt ECF transporter T component CbiQ compare
MMP_RS05515 -1.9 -8.6 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS04620 -1.9 -14.1 cobalt transporter CbiM compare
MMP_RS03035 -1.9 -5.5 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS05265 -1.8 -2.7 2-isopropylmalate synthase compare
MMP_RS07345 -1.8 -6.8 glycine synthesis protein GlyXL (from data) compare
MMP_RS01265 -1.8 -3.8 hypothetical protein compare
MMP_RS06730 -1.8 -2.6 phosphopantothenate/pantothenate synthetase compare
MMP_RS06270 -1.8 -5.2 TIGR00300 family protein compare
MMP_RS03015 -1.7 -10.7 GTP 3' 8-cyclase MoaA compare
MMP_RS05555 -1.7 -1.6 DUF4040 domain-containing protein compare
MMP_RS07635 -1.7 -8.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS05425 -1.7 -6.8 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS03600 -1.6 -2.4 triose-phosphate isomerase compare
MMP_RS06350 -1.6 -6.2 HesA/MoeB/ThiF family protein compare
MMP_RS07555 -1.6 -0.8 monovalent cation/H+ antiporter subunit E compare
MMP_RS02010 -1.6 -8.3 PHP domain-containing protein compare
MMP_RS07735 -1.6 -1.0 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS01700 -1.6 -1.2 dihydroxy-acid dehydratase compare
MMP_RS03205 -1.6 -1.5 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS02355 -1.6 -3.0 30S ribosomal protein S27ae compare
MMP_RS01225 -1.6 -5.9 DUF5379 domain-containing protein compare
MMP_RS05500 -1.5 -7.2 2-isopropylmalate synthase compare
MMP_RS07630 -1.5 -1.6 ATP-binding cassette domain-containing protein compare
MMP_RS03640 -1.5 -4.6 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS08745 -1.4 -5.9 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS00130 -1.4 -1.4 nickel-responsive transcriptional regulator NikR compare
MMP_RS01175 -1.4 -3.5 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04500 -1.4 -10.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS06355 -1.4 -2.6 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS08165 -1.4 -1.9 phosphoglycerate dehydrogenase compare
MMP_RS01455 -1.4 -6.6 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS01500 -1.4 -2.5 CBS domain-containing protein compare
MMP_RS03475 -1.4 -0.6 hypothetical protein compare
MMP_RS02235 -1.4 -7.6 CBS domain-containing protein compare
MMP_RS06315 -1.3 -1.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS00300 -1.3 -0.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07955 -1.3 -5.5 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS06285 -1.3 -2.4 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS04215 -1.3 -6.9 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS01020 -1.3 -1.0 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06700 -1.3 -8.6 hypothetical protein compare
MMP_RS02885 -1.3 -9.5 molybdopterin biosynthesis protein compare
MMP_RS02175 -1.3 -0.8 DUF1611 domain-containing protein compare
MMP_RS04790 -1.3 -9.4 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS06105 -1.3 -6.4 hydrogenase maturation peptidase HycI compare
MMP_RS08330 -1.2 -4.4 NADH-quinone oxidoreductase subunit H compare
MMP_RS05930 -1.2 -2.0 3-isopropylmalate dehydratase large subunit compare
MMP_RS08720 -1.2 -1.4 4Fe-4S binding protein compare
MMP_RS01755 -1.2 -1.2 DUF2097 domain-containing protein compare
MMP_RS03390 -1.2 -5.2 malate dehydrogenase compare
MMP_RS06485 -1.2 -1.0 zinc ribbon domain-containing protein compare
MMP_RS05090 -1.2 -7.6 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS02900 -1.2 -0.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS05070 -1.2 -5.8 4Fe-4S dicluster domain-containing protein compare
MMP_RS02135 -1.2 -3.1 DUF5612 domain-containing protein compare
MMP_RS08370 -1.2 -0.7 cation:proton antiporter subunit C compare
MMP_RS05075 -1.2 -9.1 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS07575 -1.2 -4.0 RNA ligase partner protein compare
MMP_RS03700 -1.2 -7.2 sodium:proton antiporter compare
MMP_RS05060 -1.2 -7.9 AAA family ATPase compare
MMP_RS08105 -1.2 -6.9 6-carboxyhexanoate--CoA ligase compare
MMP_RS05055 -1.2 -8.3 DUF166 domain-containing protein compare
MMP_RS05080 -1.2 -8.5 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS00685 -1.1 -3.0 2-phospho-L-lactate guanylyltransferase compare
MMP_RS05100 -1.1 -9.0 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS06340 -1.1 -5.1 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS07730 -1.1 -1.5 pyruvate synthase subunit beta compare
MMP_RS04890 -1.1 -0.7 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS06295 -1.1 -5.1 methanogenesis marker 14 protein compare
MMP_RS05095 -1.1 -6.5 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS07525 -1.1 -5.2 4Fe-4S binding protein compare
MMP_RS02240 -1.1 -2.9 methanogenesis marker 7 protein compare
MMP_RS02195 -1.1 -3.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS07645 -1.0 -4.9 aldehyde dehydrogenase family protein compare
MMP_RS01545 -1.0 -1.0 CBS domain-containing protein compare
MMP_RS05540 -1.0 -2.5 hypothetical protein compare
MMP_RS01220 -1.0 -5.4 hypothetical protein compare
MMP_RS08210 -1.0 -1.9 phosphatidylglycerophosphatase A compare
MMP_RS00695 -1.0 -0.8 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS04955 -1.0 -3.6 DNA topoisomerase I compare
MMP_RS05085 -1.0 -4.7 AAA family ATPase compare
MMP_RS03140 -1.0 -7.1 hypothetical protein compare
MMP_RS04685 -1.0 -1.9 DUF126 domain-containing protein compare
MMP_RS03145 -1.0 -4.7 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS06475 -1.0 -3.6 FAD-dependent oxidoreductase compare
MMP_RS02875 -0.9 -6.0 chorismate pyruvate-lyase family protein compare
MMP_RS06375 -0.9 -3.7 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS07600 -0.9 -2.2 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS06925 -0.9 -2.1 ribonuclease VapC4 compare
MMP_RS08320 -0.9 -3.3 molybdopterin molybdotransferase MoeA compare
MMP_RS06680 -0.9 -5.0 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06400 -0.9 -1.4 4Fe-4S binding protein compare
MMP_RS01610 -0.9 -1.6 hypothetical protein compare
MMP_RS06625 -0.9 -1.8 DNA primase compare
MMP_RS00735 -0.9 -3.4 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS01380 -0.9 -3.0 PHP domain-containing protein compare
MMP_RS01830 -0.9 -1.5 tRNA-Val compare
MMP_RS07185 -0.9 -6.6 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS07195 -0.9 -4.6 M20 family metallo-hydrolase compare
MMP_RS03340 -0.9 -0.7 ABC transporter ATP-binding protein compare
MMP_RS00305 -0.9 -1.3 phosphoribosyl-ATP diphosphatase compare
MMP_RS08095 -0.9 -4.3 dethiobiotin synthase compare
MMP_RS08300 -0.9 -0.6 metal-sulfur cluster assembly factor compare
MMP_RS08240 -0.9 -3.8 methanogenesis marker 16 metalloprotein compare
MMP_RS07750 -0.9 -3.7 DUF357 domain-containing protein compare
MMP_RS03025 -0.9 -3.2 molybdenum cofactor guanylyltransferase compare
MMP_RS08760 -0.9 -1.1 hypothetical protein compare
MMP_RS06020 -0.9 -2.8 archaeoflavoprotein AfpA compare
MMP_RS08100 -0.9 -4.3 8-amino-7-oxononanoate synthase compare
MMP_RS03580 -0.9 -1.7 signal recognition particle-docking protein FtsY compare
MMP_RS03400 -0.9 -2.0 archease compare
MMP_RS06885 -0.8 -1.7 50S ribosome-binding GTPase compare
MMP_RS03250 -0.8 -2.7 MJ1244 family protein compare
MMP_RS03155 -0.8 -3.6 precorrin-6A reductase compare
MMP_RS01385 -0.8 -0.5 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00750 -0.8 -1.6 fumarate hydratase compare
MMP_RS04875 -0.8 -3.1 energy-converting hydrogenase B subunit P compare
MMP_RS07545 -0.8 -0.8 HTH domain-containing protein compare
MMP_RS06865 -0.8 -1.3 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS01005 -0.8 -0.9 riboflavin synthase compare
MMP_RS08820 -0.8 -2.6 hypothetical protein compare
MMP_RS04850 -0.8 -6.5 UPF0254 family protein compare
MMP_RS06230 -0.8 -1.4 helix-turn-helix domain-containing protein compare
MMP_RS01240 -0.8 -1.1 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS05065 -0.8 -3.7 CooT family nickel-binding protein compare
MMP_RS05815 -0.8 -1.3 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS00120 -0.8 -2.4 LysR family transcriptional regulator compare
MMP_RS06345 -0.8 -4.7 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06630 -0.8 -0.8 UPF0058 family protein compare
MMP_RS00730 -0.8 -3.0 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS06370 -0.8 -2.2 biotin synthase BioB compare
MMP_RS03420 -0.8 -2.3 acetolactate synthase small subunit compare
MMP_RS04055 -0.8 -1.2 hypothetical protein compare
MMP_RS00985 -0.8 -2.8 CDC48 family AAA ATPase compare
MMP_RS09020 -0.8 -0.9 hypothetical protein compare
MMP_RS08645 -0.8 -3.4 UPF0179 family protein compare
MMP_RS08725 -0.8 -1.6 Ni/Fe hydrogenase subunit alpha compare
MMP_RS06685 -0.7 -4.3 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS00725 -0.7 -3.0 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS01800 -0.7 -2.9 TIGR00303 family protein compare
MMP_RS00770 -0.7 -2.8 hypothetical protein compare
MMP_RS07540 -0.7 -2.3 CBS domain-containing protein compare
MMP_RS03910 -0.7 -1.6 hypothetical protein compare
MMP_RS05925 -0.7 -2.3 small nuclear ribonucleoprotein compare
MMP_RS05950 -0.7 -5.5 nickel-dependent hydrogenase large subunit compare
MMP_RS07445 -0.7 -3.1 helix-turn-helix domain-containing protein compare
MMP_RS07700 -0.7 -4.1 DUF1188 domain-containing protein compare
MMP_RS00720 -0.7 -3.8 metal-dependent hydrolase compare
MMP_RS04785 -0.7 -5.2 hypothetical protein compare
MMP_RS07710 -0.7 -3.8 cell division protein FtsZ compare
MMP_RS00900 -0.7 -1.3 50S ribosomal protein L39e compare
MMP_RS06705 -0.7 -3.1 formate/nitrite transporter family protein compare
MMP_RS02130 -0.7 -3.3 zinc metalloprotease HtpX compare
MMP_RS00810 -0.7 -3.8 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS05845 -0.7 -1.3 tRNA-intron lyase compare
MMP_RS00315 -0.7 -2.7 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS08445 -0.7 -1.8 DUF2099 family protein compare
MMP_RS08715 -0.7 -1.2 formylmethanofuran dehydrogenase subunit B compare
MMP_RS07755 -0.7 -0.7 DUF555 domain-containing protein compare
MMP_RS05445 -0.7 -4.0 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS05535 -0.7 -3.1 hypothetical protein compare
MMP_RS03095 -0.7 -2.6 diphthine synthase compare
MMP_RS02805 -0.7 -0.9 HEPN domain-containing protein compare
MMP_RS06770 -0.7 -3.8 DHH family phosphoesterase compare
MMP_RS07385 -0.7 -1.2 protein translocase SEC61 complex subunit gamma compare
MMP_RS08350 -0.7 -0.6 hypothetical protein compare
MMP_RS00535 -0.7 -1.8 TIGR00375 family protein compare
MMP_RS05295 -0.7 -3.9 minichromosome maintenance protein MCM compare
MMP_RS01250 -0.7 -2.2 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS01195 -0.6 -0.8 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06980 -0.6 -3.5 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS00515 -0.6 -0.5 DUF655 domain-containing protein compare
MMP_RS00295 -0.6 -1.4 gamma carbonic anhydrase family protein compare
MMP_RS00110 -0.6 -1.5 hypothetical protein compare
MMP_RS02935 -0.6 -2.8 A24 family peptidase compare
MMP_RS01960 -0.6 -0.4 hypothetical protein compare
MMP_RS06385 -0.6 -3.0 hypothetical protein compare
MMP_RS00830 -0.6 -1.4 purine phosphoribosyltransferase family protein compare
MMP_RS08415 -0.6 -1.6 radical SAM protein compare
MMP_RS01110 -0.6 -2.1 FmdE family protein compare
MMP_RS06895 -0.6 -1.0 selenocysteine-specific translation elongation factor compare
MMP_RS03775 -0.6 -2.2 4Fe-4S dicluster domain-containing protein compare
MMP_RS02110 -0.6 -1.2 hypothetical protein compare
MMP_RS03225 -0.6 -2.8 acetolactate decarboxylase compare
MMP_RS04255 -0.6 -3.6 coenzyme F420 hydrogenase subunit beta compare
MMP_RS04585 -0.6 -3.4 AIR synthase related protein compare
MMP_RS06290 -0.6 -2.6 DNA repair and recombination protein RadA compare
MMP_RS07435 -0.6 -1.1 GMP synthase subunit A compare
MMP_RS01790 -0.6 -4.1 restriction endonuclease compare
MMP_RS01840 -0.6 -2.8 TIGR00289 family protein compare
MMP_RS05315 -0.6 -1.2 hypothetical protein compare
MMP_RS04125 -0.6 -2.2 TetR/AcrR family transcriptional regulator compare
MMP_RS00895 -0.6 -1.9 hypothetical protein compare
MMP_RS07705 -0.5 -3.6 transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Mc_vitamins across organisms