Experiment set4IT031 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with syringaldehyde 0.5 mM

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_3579 +1.0 4.1 hypothetical protein compare
Ga0059261_2086 +0.8 1.8 SAF-like compare
Ga0059261_0242 +0.8 1.8 hypothetical protein compare
Ga0059261_3492 +0.8 5.1 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_3490 +0.7 4.8 Response regulator receiver domain/Sigma-70, region 4 compare
Ga0059261_3518 +0.7 6.0 RND family efflux transporter, MFP subunit compare
Ga0059261_0957 +0.6 1.1 Protein of unknown function (DUF2798) compare
Ga0059261_0208 +0.6 3.0 Response regulator receiver domain compare
Ga0059261_3598 +0.6 2.6 Flp pilus assembly protein, pilin Flp compare
Ga0059261_2730 +0.6 1.6 Sortase and related acyltransferases compare
Ga0059261_3992 +0.5 1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_0811 +0.5 1.8 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_2618 +0.5 1.6 Protein of unknown function (DUF2721) compare
Ga0059261_3085 +0.5 1.2 Predicted transcriptional regulators compare
Ga0059261_3507 +0.5 4.3 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CHASE3 domain compare
Ga0059261_3371 +0.5 1.5 hypothetical protein compare
Ga0059261_1035 +0.5 1.5 hypothetical protein compare
Ga0059261_3581 +0.5 3.2 Alpha/beta hydrolase family compare
Ga0059261_1958 +0.5 2.5 Transcriptional regulators compare
Ga0059261_2413 +0.5 1.3 hypothetical protein compare
Ga0059261_4007 +0.5 1.2 Transcriptional regulators compare
Ga0059261_1043 +0.5 1.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_3664 +0.5 3.0 hypothetical protein compare
Ga0059261_0848 +0.5 3.1 transcriptional regulator, TetR family compare
Ga0059261_0931 +0.4 1.2 molybdenum cofactor biosynthesis protein MoaC compare
Ga0059261_3604 +0.4 1.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_3684 +0.4 2.4 hypothetical protein compare
Ga0059261_0626 +0.4 1.5 Fructose-2,6-bisphosphatase compare
Ga0059261_1197 +0.4 1.8 hypothetical protein compare
Ga0059261_0659 +0.4 1.5 transcriptional regulator, HxlR family compare
Ga0059261_3833 +0.4 0.9 hypothetical protein compare
Ga0059261_0466 +0.4 2.6 RND family efflux transporter, MFP subunit compare
Ga0059261_2587 +0.4 1.8 hypothetical protein compare
Ga0059261_3233 +0.4 2.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_2229 +0.4 1.1 Predicted transcriptional regulators compare
Ga0059261_3886 +0.4 2.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_3971 +0.4 1.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_0411 +0.4 1.1 Uncharacterized conserved protein compare
Ga0059261_2188 +0.4 1.0 Uncharacterized conserved protein compare
Ga0059261_1574 +0.4 1.7 Superfamily II DNA and RNA helicases compare
Ga0059261_3491 +0.4 2.6 hypothetical protein compare
Ga0059261_0032 +0.4 2.0 Protein of unknown function, DUF488 compare
Ga0059261_3512 +0.4 0.9 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
Ga0059261_3451 +0.3 0.8 hypothetical protein compare
Ga0059261_2231 +0.3 1.5 Uncharacterized conserved protein compare
Ga0059261_2097 +0.3 1.7 Rod binding protein compare
Ga0059261_2448 +0.3 1.0 DNA protecting protein DprA compare
Ga0059261_1146 +0.3 1.7 Flagellar basal body L-ring protein compare
Ga0059261_2768 +0.3 1.3 hypothetical protein compare
Ga0059261_3345 +0.3 1.0 TlyA family rRNA methyltransferase/putative hemolysin compare
Ga0059261_2241 +0.3 2.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_2663 +0.3 0.6 Domain of unknown function (DUF718) compare
Ga0059261_1021 +0.3 0.7 hypothetical protein compare
Ga0059261_2378 +0.3 0.8 phage virion morphogenesis (putative tail completion) protein compare
Ga0059261_0745 +0.3 1.5 Uncharacterized membrane protein, required for colicin V production compare
Ga0059261_2593 +0.3 1.2 hypothetical protein compare
Ga0059261_1799 +0.3 1.2 Uncharacterized protein conserved in bacteria (DUF2059) compare
Ga0059261_3356 +0.3 0.5 hypothetical protein compare
Ga0059261_0723 +0.3 1.3 hypothetical protein compare
Ga0059261_1185 +0.3 0.8 Thiolase, C-terminal domain compare
Ga0059261_3562 +0.3 1.3 Glycosyltransferase compare
Ga0059261_0850 +0.3 0.7 hypothetical protein compare
Ga0059261_4060 +0.3 0.8 Predicted membrane protein compare
Ga0059261_2090 +0.3 1.5 flagellar basal-body rod protein FlgC compare
Ga0059261_4030 +0.3 1.6 glutamate N-acetyltransferase (EC 2.3.1.35) compare
Ga0059261_0493 +0.3 0.4 hypothetical protein compare
Ga0059261_1262 +0.3 2.5 cobaltochelatase CobS subunit (EC 6.6.1.2) compare
Ga0059261_3710 +0.3 2.2 Peptidase family M28 compare
Ga0059261_3366 +0.3 1.4 hypothetical protein compare
Ga0059261_1756 +0.3 0.9 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes compare
Ga0059261_1914 +0.3 0.7 Acetyltransferases compare
Ga0059261_0244 +0.3 1.4 FOG: CheY-like receiver compare
Ga0059261_3622 +0.3 1.6 hypothetical protein compare
Ga0059261_0143 +0.3 1.9 hypothetical protein compare
Ga0059261_0911 +0.3 1.2 Domain of unknown function (DUF3597) compare
Ga0059261_1181 +0.3 0.9 hypothetical protein compare
Ga0059261_0315 +0.3 1.6 transcriptional regulator, Spx/MgsR family compare
Ga0059261_3649 +0.3 1.8 hypothetical protein compare
Ga0059261_1975 +0.3 1.9 hypothetical protein compare
Ga0059261_1538 +0.3 0.7 Predicted transcriptional regulators compare
Ga0059261_4203 +0.3 1.3 Arabinose efflux permease compare
Ga0059261_2182 +0.3 2.0 Predicted metal-dependent hydrolase compare
Ga0059261_1732 +0.3 1.3 Flagellar hook capping protein - N-terminal region compare
Ga0059261_2581 +0.3 1.4 Uncharacterized conserved protein (DUF2285) compare
Ga0059261_1110 +0.3 1.4 flagellar biosynthetic protein FliP compare
Ga0059261_0887 +0.3 1.1 Predicted transcriptional regulators compare
Ga0059261_1577 +0.3 2.2 L-glutamine and L-histidine transporter (from data) compare
Ga0059261_0742 +0.3 1.6 Uncharacterized small membrane protein compare
Ga0059261_0344 +0.3 0.8 Molecular chaperone (small heat shock protein) compare
Ga0059261_2736 +0.3 1.4 hypothetical protein compare
Ga0059261_3382 +0.3 1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_0690 +0.3 0.6 Acetyltransferases compare
Ga0059261_2186 +0.3 1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_2251 +0.2 1.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_1478 +0.2 0.9 Predicted dioxygenase of extradiol dioxygenase family compare
Ga0059261_3877 +0.2 0.8 hypothetical protein compare
Ga0059261_0141 +0.2 1.0 transcriptional regulator, LysR family compare
Ga0059261_0266 +0.2 0.4 hypothetical protein compare
Ga0059261_3132 +0.2 1.4 hypothetical protein compare
Ga0059261_2548 +0.2 0.9 tRNA compare
Ga0059261_1126 +0.2 1.0 Response regulator compare
Ga0059261_2843 +0.2 1.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_0781 +0.2 0.7 hypothetical protein compare
Ga0059261_1300 +0.2 1.0 hypothetical protein compare
Ga0059261_1881 +0.2 0.9 Predicted membrane protein compare
Ga0059261_2978 +0.2 1.0 Transcriptional regulators compare
Ga0059261_1513 +0.2 1.3 hypothetical protein compare
Ga0059261_1570 +0.2 1.6 N-formylglutamate amidohydrolase compare
Ga0059261_4135 +0.2 1.5 DnaJ domain compare
Ga0059261_0625 +0.2 1.1 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Ga0059261_3168 +0.2 1.1 peroxiredoxin, OsmC subfamily compare
Ga0059261_1109 +0.2 1.1 Flagellar biosynthesis protein, FliO compare
Ga0059261_1357 +0.2 1.5 hypothetical protein compare
Ga0059261_0821 +0.2 1.3 hypothetical protein compare
Ga0059261_3441 +0.2 1.0 hypothetical protein compare
Ga0059261_1803 +0.2 1.3 Domain of unknown function (DUF4136) compare
Ga0059261_2331 +0.2 1.6 hypothetical protein compare
Ga0059261_3287 +0.2 1.9 Topoisomerase IB compare
Ga0059261_1114 +0.2 0.9 hypothetical protein compare
Ga0059261_2063 +0.2 1.0 Flagellar biosynthesis protein, FliO compare
Ga0059261_4058 +0.2 1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_0656 +0.2 0.8 Predicted dehydrogenases and related proteins compare
Ga0059261_2017 +0.2 1.7 Glycosyltransferase compare
Ga0059261_0239 +0.2 0.4 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
Ga0059261_0093 +0.2 1.7 Signal transduction histidine kinase compare
Ga0059261_1514 +0.2 1.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_3285 +0.2 0.9 Acyl dehydratase compare
Ga0059261_0654 +0.2 1.0 Chemotaxis signal transduction protein compare
Ga0059261_0832 +0.2 1.9 Predicted permease compare
Ga0059261_1082 +0.2 1.4 Chemotaxis signal transduction protein compare
Ga0059261_0084 +0.2 0.6 hypothetical protein compare
Ga0059261_2349 +0.2 1.1 hypothetical protein compare
Ga0059261_2065 +0.2 1.0 Flagellar motor switch protein compare
Ga0059261_2436 +0.2 1.2 hypothetical protein compare
Ga0059261_1311 +0.2 1.0 Nitroreductase compare
Ga0059261_0139 +0.2 1.3 Signal transduction histidine kinase, nitrogen specific compare
Ga0059261_3800 +0.2 0.8 Cold shock proteins compare
Ga0059261_3139 +0.2 1.3 Predicted membrane protein compare
Ga0059261_0907 +0.2 1.0 Predicted transcriptional regulators compare
Ga0059261_3056 +0.2 0.8 Protein of unknown function (DUF2958) compare
Ga0059261_2590 +0.2 1.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_3410 +0.2 1.5 Glycosyltransferase compare
Ga0059261_2897 +0.2 0.9 hypothetical protein compare
Ga0059261_3989 +0.2 1.6 biotin synthase (EC 2.8.1.6) compare
Ga0059261_0132 +0.2 1.5 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Ga0059261_1198 +0.2 1.5 hypothetical protein compare
Ga0059261_1381 +0.2 1.0 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_4033 +0.2 1.4 Uncharacterized conserved protein compare
Ga0059261_3359 +0.2 0.8 Zn-dependent hydrolases, including glyoxylases compare
Ga0059261_3347 +0.2 0.9 Domain of unknown function DUF87 compare
Ga0059261_3271 +0.2 0.4 arsenate reductase (glutaredoxin) compare
Ga0059261_1423 +0.2 1.5 Trypsin-like peptidase domain compare
Ga0059261_3218 +0.2 1.6 Predicted rRNA methylase (SpoU class) compare
Ga0059261_1394 +0.2 1.4 putative efflux protein, MATE family compare
Ga0059261_2715 +0.2 1.2 hypothetical protein compare
Ga0059261_0351 +0.2 1.4 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
Ga0059261_0034 +0.2 1.4 Putative threonine efflux protein compare
Ga0059261_2429 +0.2 1.0 2'-5' RNA ligase superfamily compare
Ga0059261_0936 +0.2 1.3 phenazine biosynthesis protein PhzF family compare
Ga0059261_0679 +0.2 1.4 Protein related to penicillin acylase compare
Ga0059261_0955 +0.2 1.1 PilZ domain compare
Ga0059261_2716 +0.2 0.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_3799 +0.2 0.9 hypothetical protein compare
Ga0059261_0284 +0.2 1.3 Leucyl aminopeptidase compare
Ga0059261_3993 +0.2 1.7 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Ga0059261_2077 +0.2 1.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_3090 +0.2 1.3 Uncharacterized proteins, LmbE homologs compare
Ga0059261_1691 +0.2 1.4 FAD/FMN-containing dehydrogenases compare
Ga0059261_2325 +0.2 1.1 MerR HTH family regulatory protein compare
Ga0059261_4166 +0.2 1.4 hypothetical protein compare
Ga0059261_3266 +0.2 1.7 ribonuclease R compare
Ga0059261_0579 +0.2 1.6 Neutral trehalase compare
Ga0059261_1939 +0.2 0.4 putative phosphoesterase compare
Ga0059261_1517 +0.2 1.2 Predicted acetyltransferase compare
Ga0059261_2611 +0.2 1.5 Uncharacterized secreted protein compare
Ga0059261_0738 +0.2 1.0 Predicted transcriptional regulators compare
Ga0059261_0645 +0.2 0.9 DNA replication and repair protein RecR compare
Ga0059261_1485 +0.2 1.0 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Ga0059261_1962 +0.2 0.6 RNase HII (EC 3.1.26.4) compare
Ga0059261_3510 +0.2 1.4 Sortase and related acyltransferases compare
Ga0059261_0597 +0.2 0.9 hypothetical protein compare
Ga0059261_0585 +0.2 1.1 Predicted membrane protein (DUF2306) compare
Ga0059261_1014 +0.2 1.1 cation diffusion facilitator family transporter compare
Ga0059261_1733 +0.2 1.1 hypothetical protein compare
Ga0059261_1774 +0.2 0.4 hypothetical protein compare
Ga0059261_1972 +0.2 1.1 Domain of unknown function (DUF3814) compare
Ga0059261_1139 +0.2 1.0 MgtE intracellular N domain compare
Ga0059261_2939 +0.2 1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_3862 +0.2 1.1 Multidrug resistance efflux pump compare
Ga0059261_3854 +0.2 1.5 dimethylhistidine N-methyltransferase compare
Ga0059261_2989 +0.2 1.1 AraC-type DNA-binding domain-containing proteins compare
Ga0059261_2533 +0.2 1.3 hypothetical protein compare
Ga0059261_0814 +0.2 1.0 hypothetical protein compare
Ga0059261_0340 +0.2 0.8 Bacterial protein of unknown function (DUF937) compare
Ga0059261_2653 +0.2 1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_2245 +0.2 1.4 hypothetical protein compare
Ga0059261_1431 +0.2 0.8 hypothetical protein compare
Ga0059261_0631 +0.2 0.8 adenosylcobinamide kinase (EC 2.7.1.156)/adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Ga0059261_3134 +0.2 1.3 hypothetical protein compare
Ga0059261_2665 +0.2 1.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare


Specific Phenotypes

None in this experiment

For Sphingomonas koreensis DSMZ 15582 in stress experiments

For stress syringaldehyde across organisms