Experiment set4IT029 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Rotenone 0.125 mg/ml

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -5.3 -5.1 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1544 -4.5 -4.3 SirA-like protein compare
Psyr_4740 -4.3 -8.2 thiazole-phosphate synthase compare
Psyr_4341 -3.9 -10.7 thiamine-phosphate diphosphorylase compare
Psyr_3008 -3.8 -8.5 Undecaprenyl-diphosphatase compare
Psyr_4340 -3.7 -9.8 phosphomethylpyrimidine kinase, putative compare
Psyr_1613 -3.6 -6.7 septum site-determining protein MinC compare
Psyr_0565 -3.5 -9.3 Protein of unknown function UPF0126 compare
Psyr_4686 -3.3 -5.9 8-amino-7-oxononanoate synthase compare
Psyr_0917 -3.2 -13.7 ABC-2 compare
Psyr_0454 -3.0 -5.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_2080 -2.9 -9.9 aminodeoxychorismate synthase, subunit I compare
Psyr_4684 -2.9 -3.8 biotin synthesis protein BioC compare
Psyr_4687 -2.8 -8.8 biotin synthase compare
Psyr_4683 -2.8 -5.2 dethiobiotin synthase compare
Psyr_0918 -2.6 -12.7 ABC transporter compare
Psyr_1373 -2.5 -3.9 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0826 -2.4 -8.5 glucose-6-phosphate isomerase compare
Psyr_4091 -2.3 -4.4 8-oxo-dGTPase compare
Psyr_4991 -2.2 -3.6 hypothetical protein compare
Psyr_4203 -2.1 -2.4 SsrA-binding protein compare
Psyr_0849 -2.0 -10.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_0014 -2.0 -4.7 lipid A biosynthesis acyltransferase compare
Psyr_4362 -1.9 -3.7 Rare lipoprotein A compare
Psyr_2980 -1.8 -4.0 UDP-glucose pyrophosphorylase compare
Psyr_0303 -1.8 -5.2 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_4087 -1.7 -2.1 Protein of unknown function DUF520 compare
Psyr_4622 -1.7 -5.1 Nucleotidyl transferase compare
Psyr_0034 -1.7 -6.3 tryptophan synthase, beta chain compare
Psyr_3208 -1.6 -2.4 NADH dehydrogenase subunit M compare
Psyr_3701 -1.5 -3.2 thioredoxin, putative compare
Psyr_0487 -1.5 -3.3 glutathione synthase compare
Psyr_0378 -1.5 -7.5 Glycosyl transferase, family 2 compare
Psyr_3954 -1.4 -4.5 GTP-binding protein LepA compare
Psyr_0377 -1.4 -6.1 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_4581 -1.4 -2.9 anthranilate synthase, component II compare
Psyr_3419 -1.4 -4.7 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_1650 -1.4 -2.9 aminodeoxychorismate lyase apoprotein compare
Psyr_0827 -1.4 -4.6 pantothenate synthetase compare
Psyr_2095 -1.4 -4.4 Conserved TM helix compare
Psyr_3202 -1.4 -2.3 NADH dehydrogenase subunit G compare
Psyr_0255 -1.4 -2.3 glutamate-cysteine ligase compare
Psyr_3020 -1.4 -2.2 precorrin-4 C11-methyltransferase compare
Psyr_2855 -1.3 -4.5 methionine synthase (B12-independent) compare
Psyr_3581 -1.3 -5.8 ribosomal large subunit pseudouridine synthase B compare
Psyr_4424 -1.3 -7.0 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_0529 -1.3 -4.0 Glycosyl transferase, group 1 compare
Psyr_3808 -1.3 -2.8 hypothetical protein compare
Psyr_0259 -1.3 -3.4 Osmolarity sensor protein envZ compare
Psyr_0976 -1.3 -4.4 Malate:quinone-oxidoreductase compare
Psyr_1751 -1.3 -4.2 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0831 -1.2 -2.5 Two-component response regulator CbrB compare
Psyr_3193 -1.2 -2.4 Transcription factor jumonji, jmjC compare
Psyr_3287 -1.2 -1.7 DNA topoisomerase I compare
Psyr_4460 -1.2 -1.8 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_4940 -1.2 -2.9 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_1277 -1.2 -2.8 formate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_0571 -1.2 -3.4 tRNA isopentenyltransferase compare
Psyr_2854 -1.2 -4.2 conserved hypothetical protein compare
Psyr_1198 -1.2 -2.2 type III secretion protein HrpF compare
Psyr_1410 -1.2 -3.4 Holliday junction DNA helicase RuvB compare
Psyr_1556 -1.1 -2.2 hypothetical protein compare
Psyr_2406 -1.1 -2.0 Flavin reductase-like protein compare
Psyr_5132 -1.1 -2.1 Glucose-inhibited division protein A subfamily compare
Psyr_1371 -1.1 -4.8 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_0393 -1.1 -3.2 Protein of unknown function DUF971 compare
Psyr_2507 -1.1 -2.9 Endoribonuclease L-PSP compare
Psyr_3640 -1.1 -2.7 conserved hypothetical protein compare
Psyr_4141 -1.1 -4.1 ABC transporter compare
Psyr_3179 -1.1 -2.4 DNA translocase FtsK compare
Psyr_1747 -1.0 -3.1 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_3013 -1.0 -1.9 magnesium chelatase subunit ChlD compare
Psyr_3055 -1.0 -1.7 Aminoglycoside phosphotransferase compare
Psyr_3672 -1.0 -2.2 cobalamin-5'-phosphate synthase compare
Psyr_4089 -1.0 -4.4 PAS compare
Psyr_4920 -1.0 -2.2 conserved hypothetical bacteriophage protein compare
Psyr_5067 -1.0 -3.9 conserved hypothetical protein compare
Psyr_1749 -1.0 -4.9 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_4408 -1.0 -5.3 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_1816 -1.0 -2.5 transcriptional regulator, GntR family compare
Psyr_1952 -1.0 -2.9 hypothetical protein compare
Psyr_0532 -1.0 -3.9 conserved hypothetical protein compare
Psyr_1748 -1.0 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0579 -1.0 -6.6 RNAse R compare
Psyr_1910 -0.9 -3.9 VacJ-like lipoprotein compare
Psyr_1864 -0.9 -3.8 spermidine synthase compare
Psyr_1108 -0.9 -5.5 glyceraldehyde-3-phosphate dehydrogenase compare
Psyr_2348 -0.9 -1.7 hypothetical protein compare
Psyr_1791 -0.9 -2.1 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_4808 -0.9 -1.3 conserved hypothetical protein compare
Psyr_2471 -0.9 -1.8 hydroxymethylglutaryl-CoA lyase compare
Psyr_4838 -0.9 -2.6 transcriptional regulator, MerR family compare
Psyr_5135 -0.9 -1.8 Protein of unknown function DUF37 compare
Psyr_4593 -0.9 -3.4 sigma factor domain protein compare
Psyr_0549 -0.9 -1.9 Metallophosphoesterase compare
Psyr_0941 -0.9 -4.3 Conserved hypothetical protein 92 compare
Psyr_0574 -0.9 -3.6 protease FtsH subunit HflK compare
Psyr_0729 -0.9 -4.0 CDS compare
Psyr_0835 -0.9 -3.7 transcriptional regulator, TraR/DksA family compare
Psyr_0817 -0.9 -3.2 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_2808 -0.9 -2.3 hypothetical protein compare
Psyr_3952 -0.9 -2.3 conserved hypothetical protein compare
Psyr_3905 -0.8 -4.4 glycerol kinase compare
Psyr_3904 -0.8 -3.9 Major intrinsic protein compare
Psyr_3199 -0.8 -2.1 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_0119 -0.8 -2.0 CDS compare
Psyr_4078 -0.8 -6.4 AmpG-related permease compare
Psyr_0575 -0.8 -2.6 protease FtsH subunit HflC compare
Psyr_2347 -0.8 -2.1 hypothetical protein compare
Psyr_2196 -0.8 -2.2 Urease accessory protein UreG compare
Psyr_3691 -0.8 -3.7 conserved hypothetical protein compare
Psyr_1419 -0.8 -1.7 preQ(0) biosynthesis protein QueC compare
Psyr_0356 -0.8 -1.8 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein compare
Psyr_0475 -0.8 -1.9 Protein of unknown function YGGT compare
Psyr_1935 -0.8 -3.9 Protein of unknown function DUF796 compare
Psyr_3462 -0.8 -1.5 conserved hypothetical protein compare
Psyr_0524 -0.8 -2.4 Lipopolysaccharide kinase compare
Psyr_3213 -0.8 -2.2 Propeptide, PepSY amd peptidase M4 compare
Psyr_4893 -0.8 -2.0 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_5129 -0.8 -2.9 chromosome segregation DNA-binding protein compare
Psyr_0282 -0.8 -2.0 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1955 -0.8 -1.9 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_5065 -0.8 -4.0 ATP-dependent DNA helicase UvrD compare
Psyr_4118 -0.7 -3.8 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_1408 -0.7 -1.4 Holliday junction endonuclease RuvC compare
Psyr_0736 -0.7 -2.6 umuC protein compare
Psyr_1094 -0.7 -2.2 cold-shock DNA-binding protein family compare
Psyr_3095 -0.7 -2.6 transport system permease protein compare
Psyr_2180 -0.7 -2.8 transcriptional regulator, LysR family compare
Psyr_3337 -0.7 -2.4 gluconate kinase, SKI family compare
Psyr_4754 -0.7 -1.2 16S rRNA m(2)G-966 methyltransferase compare
Psyr_1588 -0.7 -1.9 Putative exonuclease, RdgC compare
Psyr_3459 -0.7 -1.7 Helix-turn-helix, Fis-type compare
Psyr_4879 -0.7 -2.6 hypothetical protein compare
Psyr_5133 -0.7 -2.4 tRNA modification GTPase trmE compare
Psyr_2285 -0.7 -1.3 Twin-arginine translocation pathway signal compare
Psyr_2213 -0.7 -2.1 transcriptional regulator, AraC family compare
Psyr_2562 -0.7 -1.9 hypothetical protein compare
Psyr_3776 -0.7 -2.4 Cytosine deaminase compare
Psyr_1418 -0.7 -1.9 Radical SAM compare
Psyr_3554 -0.7 -1.4 Carbon storage regulator compare
Psyr_4498 -0.7 -1.8 outer membrane transport energization protein ExbD compare
Psyr_4887 -0.7 -4.6 Peptidase S41A, C-terminal protease compare
Psyr_3450 -0.7 -2.9 Hpt compare
Psyr_1581 -0.7 -2.8 conserved hypothetical protein compare
Psyr_4309 -0.7 -2.8 hypothetical protein compare
Psyr_4093 -0.7 -2.9 glutamate N-acetyltransferase compare
Psyr_1929 -0.7 -3.5 hypothetical protein compare
Psyr_0680 -0.7 -2.1 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_0386 -0.7 -2.6 phosphoribosyl-AMP cyclohydrolase compare
Psyr_0885 -0.7 -1.1 conserved hypothetical protein compare
Psyr_0832 -0.7 -4.1 Two-component sensor kinase CbrA compare
Psyr_4688 -0.7 -3.1 Phosphoribosyltransferase compare
Psyr_5072 -0.7 -1.1 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_3324 -0.7 -2.2 transcriptional regulator, TetR family compare
Psyr_4194 -0.7 -2.2 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_0724 -0.7 -1.5 conserved hypothetical protein compare
Psyr_2203 -0.7 -3.0 amino acid/amide ABC transporter membrane protein 2, HAAT family compare
Psyr_3088 -0.7 -2.2 Glycosyl transferase, group 1 compare
Psyr_4623 -0.7 -4.7 Aminoglycoside phosphotransferase compare
Psyr_0746 -0.7 -1.8 IS66 Orf2 like protein compare
Psyr_2641 -0.6 -1.9 hypothetical protein compare
Psyr_4139 -0.6 -2.8 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_4882 -0.6 -3.3 protein translocase subunit secB compare
Psyr_1780 -0.6 -1.4 transcriptional regulator, TetR family compare
Psyr_2254 -0.6 -2.1 Phosphonate metabolism PhnJ compare
Psyr_1227 -0.6 -1.9 Queuosine biosynthesis protein compare
Psyr_4843 -0.6 -3.1 NUDIX hydrolase compare
Psyr_0184 -0.6 -1.8 Protein of unknown function DUF484 compare
Psyr_1930 -0.6 -2.1 hypothetical protein compare
Psyr_2462 -0.6 -3.2 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_1880 -0.6 -2.9 Cytochrome c, class I compare
Psyr_1547 -0.6 -1.9 glycine cleavage system transcriptional repressor compare
Psyr_1424 -0.6 -1.2 Peptidase S24, S26A and S26B compare
Psyr_0857 -0.6 -1.2 [SSU ribosomal protein S18P]-alanine acetyltransferase compare
Psyr_4057 -0.6 -1.4 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_4716 -0.6 -2.1 Sarcosine oxidase, gamma subunit, heterotetrameric compare
Psyr_3262 -0.6 -1.9 dnaK suppressor protein, putative compare
Psyr_4884 -0.6 -2.3 Rhodanese-like protein compare
Psyr_2201 -0.6 -1.2 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
Psyr_4092 -0.6 -2.6 Glutathione S-transferase, N-terminal compare
Psyr_4015 -0.6 -1.3 conserved domain protein compare
Psyr_0919 -0.6 -4.3 Chromosome segregation ATPase-like protein compare
Psyr_4750 -0.6 -1.7 cell division ATP-binding protein FtsE compare
Psyr_3294 -0.6 -2.4 ABC transporter compare
Psyr_0491 -0.6 -1.8 chemotaxis sensory transducer compare
Psyr_4380 -0.6 -1.6 translation initiation factor 1 (eIF-1/SUI1) compare
Psyr_1920 -0.6 -2.2 carboxyphosphonoenolpyruvate phosphonomutase-like protein compare
Psyr_4822 -0.6 -1.2 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_1965 -0.6 -2.3 Twin-arginine translocation pathway signal compare
Psyr_3184 -0.6 -1.8 ATP-dependent Clp protease adaptor protein ClpS compare
Psyr_2151 -0.6 -1.1 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_2823 -0.6 -1.0 hypothetical protein compare
Psyr_0920 -0.6 -5.0 Glycosyl transferase, group 1 compare
Psyr_2433 -0.6 -1.6 conserved hypothetical protein compare
Psyr_4512 -0.6 -2.7 putative phage-related protein compare
Psyr_3806 -0.6 -2.6 hypothetical protein compare
Psyr_2738 -0.6 -2.3 regulatory protein, LysR compare
Psyr_0444 -0.6 -0.7 Malonate decarboxylase delta subunit compare
Psyr_0099 -0.6 -1.7 Conserved hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Rotenone across organisms