Experiment set4IT029 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Rotenone 0.125 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Psyr_3692 +2.0 2.9 conserved hypothetical protein compare
Psyr_2807 +1.5 2.7 NinB compare
Psyr_2386 +1.3 2.6 hypothetical protein compare
Psyr_1270 +1.2 2.3 conserved hypothetical protein compare
Psyr_4491 +1.2 3.9 Deoxyribose-phosphate aldolase compare
Psyr_3673 +1.2 2.4 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_3000 +1.1 2.5 methyltransferase, putative compare
Psyr_2594 +1.1 1.6 unknown conserved protein in bacilli compare
Psyr_2088 +1.0 2.4 2-methylaconitate cis-trans isomerase compare
Psyr_2765 +1.0 2.5 conserved domain protein compare
Psyr_1676 +0.9 4.0 1-aminocyclopropane-1-carboxylate deaminase, putative compare
Psyr_1728 +0.9 2.6 tRNA--hydroxylase compare
Psyr_4464 +0.9 1.3 lipoprotein, putative compare
Psyr_0081 +0.9 1.7 ABC transporter compare
Psyr_3240 +0.9 1.5 CTP synthase compare
Psyr_1304 +0.9 2.5 CheW-like protein compare
Psyr_1222 +0.9 1.1 CDS compare
Psyr_0038 +0.8 3.2 Protein of unknown function DUF1161 compare
Psyr_2221 +0.8 2.4 sarcosine oxidase, gamma subunit compare
Psyr_4860 +0.8 1.5 Integrase, catalytic region compare
Psyr_4455 +0.8 1.8 conserved hypothetical protein compare
Psyr_2636 +0.8 3.1 TspO/MBR-related protein compare
Psyr_1402 +0.8 2.1 SlyX compare
Psyr_0666 +0.8 3.3 transport system permease protein compare
Psyr_2757 +0.8 2.1 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1722 +0.8 2.1 Amidohydrolase 2 compare
Psyr_1540 +0.8 3.0 hypothetical protein compare
Psyr_3373 +0.8 2.9 conserved hypothetical protein compare
Psyr_0044 +0.8 0.9 transferase hexapeptide repeat protein compare
Psyr_1154 +0.8 1.6 Copper/Zinc superoxide dismutase compare
Psyr_2297 +0.8 2.3 glucose 1-dehydrogenase compare
Psyr_2337 +0.7 2.1 conserved hypothetical protein compare
Psyr_2069 +0.7 2.4 conserved hypothetical protein compare
Psyr_4490 +0.7 1.0 transcriptional regulator, DeoR family compare
Psyr_4786 +0.7 1.7 hypothetical protein compare
Psyr_4939 +0.7 2.7 conserved hypothetical protein compare
Psyr_3432 +0.7 2.5 MotA/TolQ/ExbB proton channel compare
Psyr_3236 +0.7 3.1 transcriptional regulator, LysR family compare
Psyr_4175 +0.7 2.6 Transport-associated protein compare
Psyr_3933 +0.7 1.6 conserved hypothetical protein compare
Psyr_3688 +0.7 2.0 conserved hypothetical protein compare
Psyr_4999 +0.7 2.8 hypothetical protein compare
Psyr_1308 +0.7 1.8 Protein-glutamate methylesterase compare
Psyr_4116 +0.7 0.8 Transport-associated protein compare
Psyr_4068 +0.7 2.5 conserved hypothetical protein compare
Psyr_4637 +0.7 2.4 acyl-phosphate glycerol-3-phosphate acyltransferase compare
Psyr_3594 +0.7 2.4 membrane protein-like protein compare
Psyr_3251 +0.7 2.4 Protein of unknown function DUF6 compare
Psyr_3005 +0.6 0.9 3-oxoadipate enol-lactonase compare
Psyr_4417 +0.6 0.7 Ferredoxin--nitrite reductase compare
Psyr_3473 +0.6 1.6 Flagellar P-ring protein compare
Psyr_2755 +0.6 2.5 2-nitropropane dioxygenase, NPD compare
Psyr_3947 +0.6 1.2 Methyltransferase, putative compare
Psyr_4580 +0.6 2.0 anthranilate phosphoribosyltransferase compare
Psyr_3664 +0.6 2.9 DTW compare
Psyr_3597 +0.6 1.1 ABC transporter compare
Psyr_1721 +0.6 2.4 moxR protein, putative compare
Psyr_3058 +0.6 2.2 Amidase compare
Psyr_4596 +0.6 1.9 conserved hypothetical protein compare
Psyr_3257 +0.6 2.1 multisubunit potassium/proton antiporter, PhaG subunit compare
Psyr_2362 +0.6 2.5 Silent information regulator protein Sir2 compare
Psyr_2620 +0.6 1.4 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1937 +0.6 1.4 UspA compare
Psyr_2435 +0.6 2.5 Xylulokinase compare
Psyr_1717 +0.6 1.5 TPR repeat:von Willebrand factor, type A compare
Psyr_0637 +0.6 3.0 LrgB-like protein compare
Psyr_3489 +0.6 2.5 FlgN compare
Psyr_3934 +0.6 1.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_4845 +0.6 1.7 conserved hypothetical protein compare
Psyr_4183 +0.6 1.3 protein translocase subunit secG compare
Psyr_3357 +0.6 1.7 transcriptional regulator, LysR family compare
Psyr_2112 +0.6 1.1 Protein with unknown function DUF469 compare
Psyr_2049 +0.6 1.3 K+ transporting ATPase, KdpC subunit compare
Psyr_4125 +0.6 1.9 Protein of unknown function DUF1043 compare
Psyr_1022 +0.6 1.8 conserved hypothetical protein compare
Psyr_5029 +0.6 1.1 Rubredoxin-type Fe(Cys)4 protein compare
Psyr_1733 +0.6 1.6 Peptidyl-prolyl cis-trans isomerase, cyclophilin type compare
Psyr_2414 +0.6 1.9 murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 compare
Psyr_2238 +0.6 1.8 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_1832 +0.5 0.9 Exonuclease compare
Psyr_2588 +0.5 0.9 HpcH/HpaI aldolase compare
Psyr_3039 +0.5 1.9 protein of unknown function DUF883 compare
Psyr_2894 +0.5 1.3 conserved hypothetical protein compare
Psyr_3227 +0.5 2.2 Glycosyl transferase, family 2 compare
Psyr_3529 +0.5 1.8 Asp/Glu racemase compare
Psyr_3525 +0.5 1.8 3-hydroxyisobutyrate dehydrogenase compare
Psyr_1779 +0.5 1.6 hypothetical protein compare
Psyr_2593 +0.5 1.4 ABC transporter compare
Psyr_5051 +0.5 3.1 Aspartate ammonia-lyase compare
Psyr_3886 +0.5 0.8 methionyl-tRNA synthetase compare
Psyr_0825 +0.5 2.6 conserved hypothetical protein compare
Psyr_3677 +0.5 1.4 Aminotransferase, class I and II compare
Psyr_2785 +0.5 2.1 conserved hypothetical protein compare
Psyr_1193 +0.5 1.5 type III helper protein HrpZ1 compare
Psyr_1337 +0.5 1.5 Conserved hypothetical protein ArsC related protein compare
Psyr_4576 +0.5 1.9 OsmC-like protein compare
Psyr_5030 +0.5 1.6 chorismate lyase compare
Psyr_3394 +0.5 1.8 conserved hypothetical protein compare
Psyr_2263 +0.5 2.5 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_1306 +0.5 1.9 CheW-like protein compare
Psyr_3220 +0.5 3.1 Aminotransferase, class V compare
Psyr_2829 +0.5 2.0 conserved hypothetical protein compare
Psyr_5059 +0.5 2.6 GCN5-related N-acetyltransferase compare
Psyr_1642 +0.5 1.0 Maf-like protein compare
Psyr_3774 +0.5 2.0 PAS compare
Psyr_2604 +0.5 2.1 conserved hypothetical protein; putative membrane protein compare
Psyr_0845 +0.5 1.4 conserved hypothetical protein compare
Psyr_3174 +0.5 1.3 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_1377 +0.5 1.9 CinA, C-terminal compare
Psyr_1740 +0.5 2.5 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
Psyr_2801 +0.5 2.7 hypothetical protein compare
Psyr_3291 +0.5 1.5 hypothetical protein compare
Psyr_4043 +0.5 1.7 hypothetical protein compare
Psyr_4774 +0.5 0.5 Hypothetical protein compare
Psyr_4572 +0.5 2.9 Short-chain dehydrogenase/reductase SDR compare
Psyr_1271 +0.5 2.0 ErfK/YbiS/YcfS/YnhG compare
Psyr_2540 +0.5 0.8 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_4472 +0.5 1.7 lipoprotein, putative compare
Psyr_1829 +0.5 1.4 conserved hypothetical protein compare
Psyr_4577 +0.5 2.3 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_2064 +0.5 2.2 conserved hypothetical protein compare
Psyr_3397 +0.5 1.7 transcriptional regulator, LysR family compare
Psyr_0426 +0.4 0.8 lipoprotein, putative compare
Psyr_0694 +0.4 1.8 ABC transporter compare
Psyr_2767 +0.4 0.8 Glycoside hydrolase, family 19 compare
Psyr_1632 +0.4 1.9 ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2 compare
Psyr_3805 +0.4 1.5 hypothetical protein compare
Psyr_3606 +0.4 1.9 ABC transporter, substrate-binding protein, aliphatic sulfonate compare
Psyr_2791 +0.4 1.9 hypothetical protein compare
Psyr_0436 +0.4 0.8 Phosphopantetheine-binding protein compare
Psyr_5052 +0.4 3.8 Sodium:alanine symporter compare
Psyr_3974 +0.4 1.5 ABC transporter compare
Psyr_1123 +0.4 1.6 conserved hypothetical protein compare
Psyr_0435 +0.4 0.7 membrane protein, putative compare
Psyr_3131 +0.4 2.6 Secretion protein HlyD compare
Psyr_3154 +0.4 1.8 transcriptional regulator, TetR family compare
Psyr_2446 +0.4 2.2 MCP methyltransferase, CheR-type compare
Psyr_2668 +0.4 1.6 Helix-turn-helix, Fis-type compare
Psyr_4121 +0.4 2.5 transcriptional regulator, AraC family with amidase-like domain protein compare
Psyr_4418 +0.4 1.1 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_3555 +0.4 0.8 aspartate kinase compare
Psyr_4671 +0.4 1.4 coenzyme PQQ synthesis protein B compare
Psyr_4224 +0.4 1.2 conserved hypothetical protein compare
Psyr_3848 +0.4 1.6 L-valine ABC transporter ATP-binding protein / L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein compare
Psyr_0441 +0.4 1.5 conserved hypothetical protein compare
Psyr_0493 +0.4 1.5 CheW-like protein compare
Psyr_0837 +0.4 2.3 Sugar fermentation stimulation protein compare
Psyr_0743 +0.4 1.4 CDS compare
Psyr_1719 +0.4 0.9 conserved hypothetical protein compare
Psyr_0437 +0.4 0.9 acyl carrier protein, putative compare
Psyr_1944 +0.4 1.2 Thioesterase compare
Psyr_3631 +0.4 1.5 GreA/GreB family elongation factor compare
Psyr_3183 +0.4 2.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Psyr_2947 +0.4 1.8 hypothetical protein compare
Psyr_4612 +0.4 2.0 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2398 +0.4 1.3 ABC transporter compare
Psyr_3226 +0.4 1.3 Transcriptional activator RfaH compare
Psyr_1689 +0.4 1.5 conserved hypothetical protein compare
Psyr_0231 +0.4 0.7 conserved hypothetical protein compare
Psyr_2441 +0.4 1.6 transcriptional regulator, AraC family compare
Psyr_2954 +0.4 1.8 Phospholipase/Carboxylesterase compare
Psyr_3793 +0.4 1.9 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1616 +0.4 0.8 Rieske [2Fe-2S] region compare
Psyr_1629 +0.4 1.5 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_0622 +0.4 1.1 transcriptional regulator, XRE family compare
Psyr_3176 +0.4 1.2 camphor resistance protein CrcB compare
Psyr_1487 +0.4 1.1 conserved hypothetical protein compare
Psyr_3906 +0.4 1.0 regulatory protein, DeoR compare
Psyr_0085 +0.4 1.5 conserved hypothetical protein compare
Psyr_0037 +0.4 1.1 Protein of unknown function DUF1458 compare
Psyr_0176 +0.4 0.7 conserved hypothetical protein compare
Psyr_0485 +0.4 1.8 Protein of unknown function DUF179 compare
Psyr_3053 +0.4 1.3 conserved hypothetical protein compare
Psyr_4465 +0.4 1.0 conserved domain protein compare
Psyr_2399 +0.4 1.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3545 +0.4 1.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_3143 +0.4 1.4 general secretion pathway protein M, putative compare
Psyr_4277 +0.4 2.2 Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region compare
Psyr_0473 +0.4 1.4 Methionine biosynthesis MetW compare
Psyr_1050 +0.4 1.2 conserved hypothetical protein compare
Psyr_4485 +0.4 2.2 hypothetical protein compare
Psyr_4480 +0.4 0.6 outer membrane transport energization protein TonB compare
Psyr_2706 +0.4 1.8 gamma-glutamyl-gamma-aminobutyrate hydrolase compare
Psyr_4771 +0.4 1.8 Peptide methionine sulfoxide reductase compare
Psyr_3195 +0.4 1.1 NolW-like protein compare
Psyr_2915 +0.4 1.7 transcriptional regulator, AraC family with amidase-like domain protein compare
Psyr_0136 +0.4 2.0 outer membrane transport energization protein ExbB compare
Psyr_4506 +0.4 2.5 Glycerophosphodiester phosphodiesterase compare
Psyr_3518 +0.4 1.5 hypothetical protein compare
Psyr_4942 +0.4 1.3 HAD-superfamily hydrolase, subfamily IA, variant 3 compare
Psyr_3031 +0.4 1.4 Thiolase compare
Psyr_2743 +0.4 1.3 Lysine exporter protein (LYSE/YGGA) compare
Psyr_3321 +0.4 1.5 transcriptional regulator, LysR family compare
Psyr_1380 +0.4 2.1 Conserved hypothetical protein 730 compare
Psyr_1458 +0.4 0.8 hypothetical protein compare
Psyr_3968 +0.4 2.9 Protein of unknown function DUF112 compare
Psyr_2552 +0.4 1.1 cyclase/dehydrase compare
Psyr_0405 +0.4 1.7 Pilus assembly protein, PilO compare
Psyr_3219 +0.4 2.2 Peptidase M24 compare
Psyr_2443 +0.4 1.5 conserved domain protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Rotenone across organisms