Experiment set4IT029 for Methanococcus maripaludis S2

Compare to:

H2 deepwell acetate and vitamin FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS06285 -3.8 -3.4 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS00300 -3.6 -1.0 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06400 -3.6 -2.4 4Fe-4S binding protein compare
MMP_RS00515 -3.4 -1.4 DUF655 domain-containing protein compare
MMP_RS06630 -3.3 -1.6 UPF0058 family protein compare
MMP_RS03445 -3.0 -1.5 methanogenesis marker 17 protein compare
MMP_RS05550 -2.8 -1.0 cation:proton antiporter compare
MMP_RS01005 -2.8 -2.1 riboflavin synthase compare
MMP_RS05515 -2.6 -9.6 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS02900 -2.6 -1.0 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS07845 -2.6 -4.4 LL-diaminopimelate aminotransferase compare
MMP_RS04615 -2.6 -5.8 PDGLE domain-containing protein compare
MMP_RS04605 -2.5 -6.8 cobalt ECF transporter T component CbiQ compare
MMP_RS03015 -2.5 -13.1 GTP 3' 8-cyclase MoaA compare
MMP_RS01020 -2.5 -1.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01225 -2.5 -6.6 DUF5379 domain-containing protein compare
MMP_RS06295 -2.4 -8.2 methanogenesis marker 14 protein compare
MMP_RS02240 -2.4 -5.2 methanogenesis marker 7 protein compare
MMP_RS04620 -2.4 -15.5 cobalt transporter CbiM compare
MMP_RS00305 -2.3 -2.9 phosphoribosyl-ATP diphosphatase compare
MMP_RS05845 -2.3 -2.9 tRNA-intron lyase compare
MMP_RS06885 -2.3 -3.4 50S ribosome-binding GTPase compare
MMP_RS07635 -2.3 -8.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS03640 -2.3 -6.0 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS02195 -2.3 -6.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06350 -2.2 -8.8 HesA/MoeB/ThiF family protein compare
MMP_RS06120 -2.2 -2.9 UPF0147 family protein compare
MMP_RS03960 -2.2 -1.2 hypothetical protein compare
MMP_RS06625 -2.2 -2.7 DNA primase compare
MMP_RS02010 -2.2 -9.9 PHP domain-containing protein compare
MMP_RS09020 -2.2 -1.8 hypothetical protein compare
MMP_RS08715 -2.2 -2.4 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01265 -2.2 -4.2 hypothetical protein compare
MMP_RS07005 -2.1 -0.9 4Fe-4S binding protein compare
MMP_RS07545 -2.1 -1.5 HTH domain-containing protein compare
MMP_RS01175 -2.1 -4.1 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06730 -2.1 -2.5 phosphopantothenate/pantothenate synthetase compare
MMP_RS03600 -2.1 -3.0 triose-phosphate isomerase compare
MMP_RS07600 -2.1 -3.8 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS08745 -2.0 -8.0 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01610 -2.0 -3.5 hypothetical protein compare
MMP_RS05265 -2.0 -3.3 2-isopropylmalate synthase compare
MMP_RS08435 -2.0 -3.0 Era-like GTP-binding protein compare
MMP_RS03435 -2.0 -2.6 ketol-acid reductoisomerase compare
MMP_RS03475 -2.0 -0.8 hypothetical protein compare
MMP_RS05920 -1.9 -0.8 50S ribosomal protein L37e compare
MMP_RS06370 -1.9 -6.8 biotin synthase BioB compare
MMP_RS01500 -1.9 -3.2 CBS domain-containing protein compare
MMP_RS06230 -1.9 -3.4 helix-turn-helix domain-containing protein compare
MMP_RS03035 -1.9 -4.6 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS07630 -1.9 -1.9 ATP-binding cassette domain-containing protein compare
MMP_RS08650 -1.9 -3.7 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS03700 -1.9 -8.1 sodium:proton antiporter compare
MMP_RS08720 -1.9 -1.9 4Fe-4S binding protein compare
MMP_RS02355 -1.8 -3.9 30S ribosomal protein S27ae compare
MMP_RS08820 -1.8 -6.0 hypothetical protein compare
MMP_RS00810 -1.8 -9.4 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS02280 -1.8 -1.2 DUF211 domain-containing protein compare
MMP_RS03025 -1.8 -6.9 molybdenum cofactor guanylyltransferase compare
MMP_RS01830 -1.8 -2.2 tRNA-Val compare
MMP_RS04500 -1.8 -12.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS04780 -1.8 -3.7 ribonuclease P compare
MMP_RS01220 -1.8 -8.0 hypothetical protein compare
MMP_RS02800 -1.8 -5.8 nucleotidyltransferase domain-containing protein compare
MMP_RS01385 -1.8 -0.8 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00750 -1.8 -2.6 fumarate hydratase compare
MMP_RS04775 -1.7 -4.5 adenosylhomocysteinase compare
MMP_RS00985 -1.7 -5.3 CDC48 family AAA ATPase compare
MMP_RS06315 -1.7 -1.4 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS00685 -1.7 -4.1 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06340 -1.7 -7.2 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS06925 -1.7 -3.2 ribonuclease VapC4 compare
MMP_RS06355 -1.7 -3.2 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS04685 -1.7 -3.7 DUF126 domain-containing protein compare
MMP_RS08635 -1.7 -2.2 UbiA family prenyltransferase compare
MMP_RS01755 -1.7 -1.4 DUF2097 domain-containing protein compare
MMP_RS08095 -1.7 -7.2 dethiobiotin synthase compare
MMP_RS08100 -1.6 -7.0 8-amino-7-oxononanoate synthase compare
MMP_RS03580 -1.6 -4.6 signal recognition particle-docking protein FtsY compare
MMP_RS02875 -1.6 -10.9 chorismate pyruvate-lyase family protein compare
MMP_RS01795 -1.6 -1.8 methanogenesis marker 6 protein compare
MMP_RS02135 -1.6 -4.6 DUF5612 domain-containing protein compare
MMP_RS08105 -1.6 -6.8 6-carboxyhexanoate--CoA ligase compare
MMP_RS02345 -1.6 -3.4 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS08210 -1.6 -2.4 phosphatidylglycerophosphatase A compare
MMP_RS06270 -1.6 -5.6 TIGR00300 family protein compare
MMP_RS01800 -1.6 -4.5 TIGR00303 family protein compare
MMP_RS07625 -1.6 -4.3 cobalt ECF transporter T component CbiQ compare
MMP_RS06215 -1.6 -2.9 30S ribosomal protein S6e compare
MMP_RS00895 -1.6 -4.0 hypothetical protein compare
MMP_RS02235 -1.5 -8.1 CBS domain-containing protein compare
MMP_RS03400 -1.5 -2.3 archease compare
MMP_RS04585 -1.5 -9.3 AIR synthase related protein compare
MMP_RS05250 -1.5 -1.6 NFYB/HAP3 family transcription factor subunit compare
MMP_RS07750 -1.5 -4.8 DUF357 domain-containing protein compare
MMP_RS04710 -1.5 -1.2 hypothetical protein compare
MMP_RS03315 -1.5 -1.4 ferrous iron transport protein A compare
MMP_RS00520 -1.5 -2.0 RNA polymerase Rpb4 family protein compare
MMP_RS02165 -1.5 -8.3 tRNA-dihydrouridine synthase compare
MMP_RS05425 -1.4 -5.5 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS06840 -1.4 -1.1 DNA-directed RNA polymerase subunit N compare
MMP_RS07575 -1.4 -3.9 RNA ligase partner protein compare
MMP_RS01925 -1.4 -6.9 DUF1616 domain-containing protein compare
MMP_RS05925 -1.4 -3.1 small nuclear ribonucleoprotein compare
MMP_RS01725 -1.4 -4.5 class I SAM-dependent methyltransferase family protein compare
MMP_RS06940 -1.4 -3.1 polyprenyl diphosphate synthase compare
MMP_RS03250 -1.4 -2.8 MJ1244 family protein compare
MMP_RS06475 -1.4 -4.0 FAD-dependent oxidoreductase compare
MMP_RS02145 -1.4 -6.6 winged helix-turn-helix transcriptional regulator compare
MMP_RS07445 -1.4 -6.3 helix-turn-helix domain-containing protein compare
MMP_RS00320 -1.4 -1.9 class I SAM-dependent methyltransferase compare
MMP_RS02885 -1.4 -10.2 molybdopterin biosynthesis protein compare
MMP_RS03155 -1.3 -7.1 precorrin-6A reductase compare
MMP_RS06105 -1.3 -7.3 hydrogenase maturation peptidase HycI compare
MMP_RS06680 -1.3 -7.2 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05540 -1.3 -2.9 hypothetical protein compare
MMP_RS05815 -1.3 -2.0 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS02245 -1.3 -3.8 hypothetical protein compare
MMP_RS07195 -1.3 -8.9 M20 family metallo-hydrolase compare
MMP_RS06130 -1.3 -3.1 peptidylprolyl isomerase compare
MMP_RS08300 -1.3 -1.1 metal-sulfur cluster assembly factor compare
MMP_RS04720 -1.3 -2.6 DedA family protein compare
MMP_RS07525 -1.3 -5.9 4Fe-4S binding protein compare
MMP_RS05430 -1.3 -4.7 TIGR00288 family NYN domain-containing protein compare
MMP_RS06700 -1.3 -7.1 hypothetical protein compare
MMP_RS07695 -1.3 -4.5 DUF3236 domain-containing protein compare
MMP_RS06895 -1.3 -1.7 selenocysteine-specific translation elongation factor compare
MMP_RS07620 -1.3 -4.9 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS01365 -1.3 -2.9 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS07355 -1.3 -1.1 transcription factor S compare
MMP_RS00130 -1.3 -1.4 nickel-responsive transcriptional regulator NikR compare
MMP_RS00735 -1.3 -3.7 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS07730 -1.3 -1.9 pyruvate synthase subunit beta compare
MMP_RS01905 -1.2 -8.8 glycosyltransferase compare
MMP_RS03140 -1.2 -8.5 hypothetical protein compare
MMP_RS00725 -1.2 -6.5 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS07425 -1.2 -5.3 GTP-binding protein compare
MMP_RS06725 -1.2 -7.1 hypothetical protein compare
MMP_RS08320 -1.2 -4.3 molybdopterin molybdotransferase MoeA compare
MMP_RS04890 -1.2 -1.0 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS01720 -1.2 -2.2 replication factor C large subunit compare
MMP_RS05950 -1.2 -6.9 nickel-dependent hydrogenase large subunit compare
MMP_RS05345 -1.2 -5.7 hypothetical protein compare
MMP_RS08440 -1.2 -2.6 cell division protein SepF compare
MMP_RS07645 -1.2 -5.7 aldehyde dehydrogenase family protein compare
MMP_RS08330 -1.2 -4.5 NADH-quinone oxidoreductase subunit H compare
MMP_RS06685 -1.2 -6.1 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS04875 -1.2 -4.1 energy-converting hydrogenase B subunit P compare
MMP_RS01335 -1.2 -2.4 prefoldin subunit beta compare
MMP_RS02130 -1.2 -4.2 zinc metalloprotease HtpX compare
MMP_RS03145 -1.1 -4.5 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS07755 -1.1 -1.2 DUF555 domain-containing protein compare
MMP_RS00110 -1.1 -2.3 hypothetical protein compare
MMP_RS01325 -1.1 -1.7 dihydroneopterin aldolase family protein compare
MMP_RS07420 -1.1 -4.5 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS05930 -1.1 -2.2 3-isopropylmalate dehydratase large subunit compare
MMP_RS01900 -1.1 -7.0 hypothetical protein compare
MMP_RS07875 -1.1 -5.0 hypothetical protein compare
MMP_RS07555 -1.1 -0.7 monovalent cation/H+ antiporter subunit E compare
MMP_RS08645 -1.1 -3.6 UPF0179 family protein compare
MMP_RS07735 -1.0 -0.9 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS01840 -1.0 -5.4 TIGR00289 family protein compare
MMP_RS04850 -1.0 -8.4 UPF0254 family protein compare
MMP_RS07540 -1.0 -3.3 CBS domain-containing protein compare
MMP_RS07710 -1.0 -5.0 cell division protein FtsZ compare
MMP_RS00115 -1.0 -6.6 radical SAM protein compare
MMP_RS07380 -1.0 -1.3 transcription elongation factor Spt5 compare
MMP_RS03095 -1.0 -4.0 diphthine synthase compare
MMP_RS07955 -1.0 -4.8 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS06020 -1.0 -3.8 archaeoflavoprotein AfpA compare
MMP_RS08370 -1.0 -0.6 cation:proton antiporter subunit C compare
MMP_RS07090 -1.0 -4.7 tRNA (adenine-N1)-methyltransferase compare
MMP_RS07435 -1.0 -1.8 GMP synthase subunit A compare
MMP_RS00730 -1.0 -3.4 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS00900 -1.0 -1.9 50S ribosomal protein L39e compare
MMP_RS01975 -1.0 -6.7 hypothetical protein compare
MMP_RS05245 -1.0 -5.3 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS06980 -0.9 -4.7 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS07390 -0.9 -1.9 cell division protein FtsZ compare
MMP_RS00315 -0.9 -2.9 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS07615 -0.9 -3.4 energy-coupling factor ABC transporter permease compare
MMP_RS05800 -0.9 -5.8 B12-binding domain-containing radical SAM protein compare
MMP_RS01045 -0.9 -4.3 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS01880 -0.9 -3.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS04955 -0.9 -4.5 DNA topoisomerase I compare
MMP_RS00695 -0.9 -0.8 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS08790 -0.9 -1.3 translation initiation factor IF-2 subunit alpha compare
MMP_RS08940 -0.9 -1.1 MetS family NSS transporter small subunit compare
MMP_RS07200 -0.9 -3.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS08840 -0.9 -6.1 class I SAM-dependent methyltransferase compare
MMP_RS01915 -0.9 -6.1 DUF354 domain-containing protein compare
MMP_RS01875 -0.9 -4.7 N-acetyltransferase compare
MMP_RS08600 -0.9 -2.2 flagellar protein D compare
MMP_RS05640 -0.9 -3.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS01895 -0.9 -5.6 flippase compare
MMP_RS06855 -0.8 -4.7 hypothetical protein compare
MMP_RS06670 -0.8 -2.0 glucose-6-phosphate isomerase compare
MMP_RS08995 -0.8 -1.2 hypothetical protein compare
MMP_RS08335 -0.8 -4.6 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS05445 -0.8 -5.4 CoB--CoM heterodisulfide reductase subunit B compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 casamino acids across organisms