Experiment set4IT029 for Methanococcus maripaludis JJ

Compare to:

Iron limitation (0.2x), H2 media

200 most important genes:

  gene name fitness t score description  
MMJJ_RS05450 -5.7 -19.9 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS06805 -5.3 -3.7 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS06240 -5.3 -3.6 dihydropteroate synthase-like protein compare
MMJJ_RS06625 -5.1 -2.9 pyruvate synthase subunit PorB compare
MMJJ_RS00235 -5.0 -19.3 hypothetical protein compare
MMJJ_RS08320 -4.9 -3.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS00600 -4.9 -4.4 hydroxymethylbilane synthase compare
MMJJ_RS06390 -4.8 -2.7 NADPH-dependent F420 reductase compare
MMJJ_RS03615 -4.7 -4.6 cobalt-precorrin-8 methylmutase compare
MMJJ_RS07950 -4.7 -4.5 4Fe-4S binding protein compare
MMJJ_RS00570 -4.6 -2.8 ribonuclease P compare
MMJJ_RS07785 -4.6 -3.2 fumarate reductase subunit A compare
MMJJ_RS08625 -4.6 -4.5 magnesium/cobalt transporter CorA compare
MMJJ_RS00275 -4.5 -3.7 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS05070 -4.5 -2.9 DNA primase catalytic subunit PriS compare
MMJJ_RS00215 -4.5 -3.1 CCA tRNA nucleotidyltransferase compare
MMJJ_RS06485 -4.4 -3.0 phosphoglycerate kinase compare
MMJJ_RS03840 -4.4 -3.1 DHH family phosphoesterase compare
MMJJ_RS04475 -4.4 -5.9 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS03820 -4.3 -4.2 hydrogenase formation protein HypD compare
MMJJ_RS03895 -4.3 -4.9 hydrogenase expression/formation protein HypE compare
MMJJ_RS06855 -4.3 -2.0 DUF2104 domain-containing protein compare
MMJJ_RS05930 -4.3 -2.7 cell division protein SepF compare
MMJJ_RS06725 -4.3 -15.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS06040 -4.3 -5.8 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS01750 -4.3 -3.8 ferrous iron transport protein A compare
MMJJ_RS02090 -4.3 -7.6 tyramine--L-glutamate ligase compare
MMJJ_RS00270 -4.3 -4.8 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS03245 -4.2 -1.7 UMP kinase compare
MMJJ_RS04485 -4.2 -8.4 riboflavin synthase compare
MMJJ_RS03200 -4.2 -2.6 uroporphyrinogen-III synthase compare
MMJJ_RS02045 -4.2 -4.2 molybdenum cofactor guanylyltransferase compare
MMJJ_RS05650 -4.1 -4.0 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS08535 -4.1 -4.8 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS05445 -4.1 -3.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS04995 -4.1 -7.3 Tfx family DNA-binding protein compare
MMJJ_RS04730 -4.1 -3.9 tyrosine decarboxylase MfnA compare
MMJJ_RS09130 -4.1 -2.3 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS06695 -4.1 -4.4 amidohydrolase compare
MMJJ_RS07720 -4.1 -3.2 UPF0058 family protein compare
MMJJ_RS08575 -4.0 -5.1 hypothetical protein compare
MMJJ_RS04685 -4.0 -11.5 carbamoyltransferase HypF compare
MMJJ_RS05620 -4.0 -3.9 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS06490 -4.0 -3.9 methanogenesis marker 2 protein compare
MMJJ_RS08250 -4.0 -8.8 hydrogenase maturation peptidase HycI compare
MMJJ_RS03005 -4.0 -4.7 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS04790 -4.0 -5.0 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS06175 -3.9 -3.3 DUF1743 domain-containing protein compare
MMJJ_RS01935 -3.9 -6.3 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS03785 -3.9 -2.7 hypothetical protein compare
MMJJ_RS00125 -3.9 -2.6 KEOPS complex subunit Cgi121 compare
MMJJ_RS04155 -3.9 -8.5 hypothetical protein compare
MMJJ_RS06510 -3.8 -4.0 LL-diaminopimelate aminotransferase compare
MMJJ_RS01755 -3.8 -2.6 ferrous iron transport protein B compare
MMJJ_RS04145 -3.8 -11.8 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS08095 -3.8 -5.7 cobyric acid synthase CobQ compare
MMJJ_RS07995 -3.8 -9.6 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS05330 -3.8 -2.6 DNA polymerase II large subunit compare
MMJJ_RS07410 -3.7 -5.7 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS07360 -3.7 -2.3 TIGR00269 family protein compare
MMJJ_RS02920 -3.7 -3.3 30S ribosomal protein S27ae compare
MMJJ_RS03670 -3.7 -6.1 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS02200 -3.7 -12.6 chorismate pyruvate-lyase family protein compare
MMJJ_RS08035 -3.7 -8.7 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS05225 -3.7 -1.4 Gar1/Naf1 family protein compare
MMJJ_RS03875 -3.7 -6.1 CBS domain-containing protein compare
MMJJ_RS00205 -3.7 -6.5 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS06840 -3.7 -4.3 nickel-dependent hydrogenase large subunit compare
MMJJ_RS03110 -3.7 -6.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS01355 -3.6 -4.3 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS04675 -3.6 -8.3 thiamine pyrophosphate-binding protein compare
MMJJ_RS06225 -3.6 -3.0 adenosylmethionine decarboxylase compare
MMJJ_RS01870 -3.6 -3.1 methanogenesis marker 15 protein compare
MMJJ_RS07190 -3.5 -4.8 RtcB family protein compare
MMJJ_RS00355 -3.5 -4.5 ribonuclease P protein component 4 compare
MMJJ_RS07705 -3.5 -4.7 GTP-binding protein EngB compare
MMJJ_RS06155 -3.5 -7.0 phosphatidylglycerophosphatase A compare
MMJJ_RS03660 -3.5 -4.8 DUF447 family protein compare
MMJJ_RS09175 -3.4 -1.9 anthranilate synthase component I compare
MMJJ_RS08080 -3.4 -10.1 TIGR00300 family protein compare
MMJJ_RS03225 -3.4 -3.8 4Fe-4S binding protein compare
MMJJ_RS00370 -3.4 -2.7 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS00580 -3.4 -2.5 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS08840 -3.4 -6.1 calcium/sodium antiporter compare
MMJJ_RS08055 -3.4 -7.4 methanogenesis marker 14 protein compare
MMJJ_RS06760 -3.4 -5.6 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS05575 -3.3 -5.5 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS07275 -3.3 -3.2 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS08155 -3.3 -4.9 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS07980 -3.3 -13.1 biotin synthase BioB compare
MMJJ_RS06220 -3.3 -7.2 polyamine aminopropyltransferase compare
MMJJ_RS05995 -3.3 -3.1 ATP-binding cassette domain-containing protein compare
MMJJ_RS03490 -3.3 -3.2 ribonuclease VapC compare
MMJJ_RS03800 -3.3 -11.4 aldolase compare
MMJJ_RS06270 -3.2 -10.7 dethiobiotin synthase compare
MMJJ_RS05260 -3.2 -5.6 ATP-grasp domain-containing protein compare
MMJJ_RS09190 -3.2 -2.9 tryptophan synthase subunit beta compare
MMJJ_RS04520 -3.2 -6.4 coenzyme F430 synthase compare
MMJJ_RS03620 -3.1 -7.3 DUF2097 domain-containing protein compare
MMJJ_RS03760 -3.1 -5.5 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS07350 -3.1 -3.9 4Fe-4S binding protein compare
MMJJ_RS03125 -3.1 -5.7 GMC oxidoreductase compare
MMJJ_RS04200 -3.1 -3.8 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS03055 -3.1 -3.6 hypothetical protein compare
MMJJ_RS01875 -3.1 -7.8 global nitrogen regulator NrpR compare
MMJJ_RS07000 -3.1 -2.2 TrkH family potassium uptake protein compare
MMJJ_RS08000 -3.1 -10.1 HesA/MoeB/ThiF family protein compare
MMJJ_RS04800 -3.1 -6.8 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS08020 -3.1 -9.7 nucleotidyltransferase domain-containing protein compare
MMJJ_RS05295 -3.1 -10.7 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS01200 -3.0 -3.7 PRC-barrel domain-containing protein compare
MMJJ_RS00645 -3.0 -11.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS07945 -3.0 -3.3 4Fe-4S binding protein compare
MMJJ_RS03830 -3.0 -12.5 CBS domain-containing protein compare
MMJJ_RS02055 -3.0 -14.2 GTP 3',8-cyclase MoaA compare
MMJJ_RS05810 -3.0 -8.0 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS06110 -3.0 -2.9 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS09375 -3.0 -2.2 hypothetical protein compare
MMJJ_RS05765 -2.9 -1.6 flagellar protein E compare
MMJJ_RS01350 -2.9 -6.7 sodium:proton antiporter compare
MMJJ_RS08660 -2.9 -4.3 acetylornithine transaminase compare
MMJJ_RS07875 -2.9 -2.6 FAD-dependent oxidoreductase compare
MMJJ_RS07380 -2.9 -10.2 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS06880 -2.9 -2.2 EhaG family protein compare
MMJJ_RS06185 -2.9 -4.9 cobalamin biosynthesis protein compare
MMJJ_RS01820 -2.9 -5.9 MJ1244 family protein compare
MMJJ_RS03060 -2.8 -3.3 methanogenesis marker 7 protein compare
MMJJ_RS03065 -2.8 -11.8 CBS domain-containing protein compare
MMJJ_RS01345 -2.8 -4.9 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS05610 -2.7 -5.1 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS09135 -2.7 -8.8 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS03150 -2.7 -8.1 2-phospho-L-lactate transferase compare
MMJJ_RS04110 -2.7 -6.2 hypothetical protein compare
MMJJ_RS05950 -2.7 -4.4 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS03230 -2.7 -5.8 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS08855 -2.7 -4.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS00560 -2.7 -3.4 homoisocitrate dehydrogenase compare
MMJJ_RS02275 -2.6 -4.7 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06875 -2.6 -3.2 hypothetical protein compare
MMJJ_RS05065 -2.6 -5.0 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS06265 -2.6 -13.9 8-amino-7-oxononanoate synthase compare
MMJJ_RS06860 -2.6 -4.3 hypothetical protein compare
MMJJ_RS05770 -2.6 -2.6 flagellar protein D compare
MMJJ_RS01810 -2.6 -2.7 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS07245 -2.6 -5.5 amidohydrolase family protein compare
MMJJ_RS05490 -2.6 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS03295 -2.6 -15.4 PHP domain-containing protein compare
MMJJ_RS01600 -2.5 -3.7 radical SAM protein compare
MMJJ_RS08325 -2.5 -3.0 glycosyltransferase family 2 protein compare
MMJJ_RS06255 -2.5 -7.9 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS04700 -2.5 -6.7 deoxyhypusine synthase compare
MMJJ_RS01815 -2.5 -4.7 DUF134 domain-containing protein compare
MMJJ_RS07725 -2.5 -6.8 DNA primase DnaG compare
MMJJ_RS08330 -2.5 -3.1 SufD family Fe-S cluster assembly protein compare
MMJJ_RS06750 -2.5 -2.6 homoaconitase large subunit compare
MMJJ_RS04010 -2.5 -5.8 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS04615 -2.5 -3.5 methanogenesis marker 3 protein compare
MMJJ_RS04565 -2.4 -3.5 sirohydrochlorin nickelochelatase compare
MMJJ_RS04150 -2.4 -3.7 DUF5379 domain-containing protein compare
MMJJ_RS07355 -2.4 -6.5 MoaD/ThiS family protein compare
MMJJ_RS06260 -2.4 -6.9 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS06375 -2.4 -5.1 UbiX family flavin prenyltransferase compare
MMJJ_RS04970 -2.4 -2.1 DUF655 domain-containing protein compare
MMJJ_RS08340 -2.4 -5.4 archaeoflavoprotein AfpA compare
MMJJ_RS04980 -2.4 -5.8 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS03095 -2.4 -2.6 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS04505 -2.4 -7.0 CDC48 family AAA ATPase compare
MMJJ_RS03580 -2.3 -3.5 TIGR00303 family protein compare
MMJJ_RS00425 -2.3 -3.4 hypothetical protein compare
MMJJ_RS06000 -2.3 -7.0 cation:proton antiporter subunit C compare
MMJJ_RS05655 -2.3 -5.0 HisA/HisF family protein compare
MMJJ_RS01880 -2.3 -3.3 RlmE family RNA methyltransferase compare
MMJJ_RS01415 -2.3 -3.3 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS08620 -2.3 -5.3 DUF373 family protein compare
MMJJ_RS00195 -2.3 -3.4 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS08870 -2.3 -1.6 2-isopropylmalate synthase compare
MMJJ_RS07470 -2.3 -2.3 50S ribosome-binding GTPase compare
MMJJ_RS06700 -2.3 -5.3 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS07455 -2.3 -6.7 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS03845 -2.3 -4.0 translation initiation factor IF-2 compare
MMJJ_RS06600 -2.3 -3.0 DUF555 domain-containing protein compare
MMJJ_RS05415 -2.3 -1.9 hypothetical protein compare
MMJJ_RS07155 -2.2 -8.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS08010 -2.2 -6.6 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS05420 -2.2 -4.0 DNA-directed DNA polymerase II small subunit compare
MMJJ_RS08825 -2.2 -6.5 hypothetical protein compare
MMJJ_RS08130 -2.2 -1.1 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS04975 -2.2 -2.2 glycosyltransferase family 4 protein compare
MMJJ_RS04650 -2.2 -5.9 nitrogenase iron protein compare
MMJJ_RS06785 -2.2 -7.7 RNA ligase partner protein compare
MMJJ_RS06705 -2.2 -4.8 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS06010 -2.2 -6.3 hypothetical protein compare
MMJJ_RS01410 -2.2 -6.5 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS07265 -2.2 -9.0 tRNA (adenine-N1)-methyltransferase compare
MMJJ_RS03765 -2.2 -8.4 hypothetical protein compare
MMJJ_RS03965 -2.2 -1.8 DNA-directed RNA polymerase subunit L compare
MMJJ_RS06180 -2.1 -3.1 tryptophan--tRNA ligase compare
MMJJ_RS04755 -2.1 -10.8 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMJJ_RS07715 -2.1 -3.2 UbiD family decarboxylase compare
MMJJ_RS04985 -2.1 -3.7 glutamyl-tRNA reductase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in iron experiments

For iron Iron (II) chloride tetrahydrate across organisms