Experiment set4IT029 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Vanillin 1 mM

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_4185 +0.9 1.6 hypothetical protein compare
Ga0059261_4224 +0.8 2.0 hypothetical protein compare
Ga0059261_3518 +0.8 7.3 RND family efflux transporter, MFP subunit compare
Ga0059261_0242 +0.8 2.1 hypothetical protein compare
Ga0059261_3579 +0.8 4.3 hypothetical protein compare
Ga0059261_0208 +0.8 2.6 Response regulator receiver domain compare
Ga0059261_1035 +0.7 2.1 hypothetical protein compare
Ga0059261_0811 +0.7 2.7 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_2413 +0.7 2.0 hypothetical protein compare
Ga0059261_0411 +0.7 2.1 Uncharacterized conserved protein compare
Ga0059261_3356 +0.6 1.3 hypothetical protein compare
Ga0059261_1904 +0.6 1.9 Asparaginase compare
Ga0059261_2448 +0.5 1.7 DNA protecting protein DprA compare
Ga0059261_0239 +0.5 1.2 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
Ga0059261_0906 +0.5 2.9 Uncharacterized conserved protein compare
Ga0059261_3490 +0.5 3.5 Response regulator receiver domain/Sigma-70, region 4 compare
Ga0059261_1527 +0.5 1.3 hypothetical protein compare
Ga0059261_1197 +0.5 2.2 hypothetical protein compare
Ga0059261_1724 +0.5 1.9 hypothetical protein compare
Ga0059261_0684 +0.5 1.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_1756 +0.5 0.9 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes compare
Ga0059261_3125 +0.5 1.0 Imidazoleglycerol-phosphate synthase compare
Ga0059261_0472 +0.5 1.7 Predicted metal-binding protein compare
Ga0059261_1530 +0.5 2.4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Ga0059261_0850 +0.5 1.2 hypothetical protein compare
Ga0059261_0237 +0.4 1.4 phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Ga0059261_2680 +0.4 0.6 hypothetical protein compare
Ga0059261_3598 +0.4 1.9 Flp pilus assembly protein, pilin Flp compare
Ga0059261_3807 +0.4 2.1 Uncharacterized conserved protein compare
Ga0059261_1612 +0.4 0.9 hypothetical protein compare
Ga0059261_4007 +0.4 1.1 Transcriptional regulators compare
Ga0059261_3581 +0.4 2.2 Alpha/beta hydrolase family compare
Ga0059261_3507 +0.4 3.4 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CHASE3 domain compare
Ga0059261_2086 +0.4 0.9 SAF-like compare
Ga0059261_2730 +0.4 1.0 Sortase and related acyltransferases compare
Ga0059261_0848 +0.4 2.8 transcriptional regulator, TetR family compare
Ga0059261_1574 +0.4 1.8 Superfamily II DNA and RNA helicases compare
Ga0059261_0911 +0.4 1.8 Domain of unknown function (DUF3597) compare
Ga0059261_2143 +0.4 1.7 Zn-dependent proteases compare
Ga0059261_2618 +0.4 1.2 Protein of unknown function (DUF2721) compare
Ga0059261_2694 +0.4 1.9 RadC-like JAB domain compare
Ga0059261_2663 +0.4 0.8 Domain of unknown function (DUF718) compare
Ga0059261_2552 +0.4 2.2 Phosphotransacetylase compare
Ga0059261_0340 +0.4 1.5 Bacterial protein of unknown function (DUF937) compare
Ga0059261_2916 +0.4 1.3 P-type conjugative transfer protein TrbJ compare
Ga0059261_3971 +0.4 1.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_3038 +0.4 1.7 hypothetical protein compare
Ga0059261_3522 +0.3 1.8 Micrococcal nuclease (thermonuclease) homologs compare
Ga0059261_2939 +0.3 2.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_3882 +0.3 1.4 dimethyladenosine transferase (EC 2.1.1.-) compare
Ga0059261_4134 +0.3 1.2 tRNA compare
Ga0059261_3696 +0.3 1.9 hypothetical protein compare
Ga0059261_4192 +0.3 1.3 ATPases involved in chromosome partitioning compare
Ga0059261_1138 +0.3 1.4 hypothetical protein compare
Ga0059261_3708 +0.3 1.8 GAF domain-containing protein compare
Ga0059261_0203 +0.3 1.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Ga0059261_1315 +0.3 1.7 Alpha/beta hydrolase family compare
Ga0059261_2581 +0.3 1.8 Uncharacterized conserved protein (DUF2285) compare
Ga0059261_2090 +0.3 1.8 flagellar basal-body rod protein FlgC compare
Ga0059261_1272 +0.3 1.8 TIGR04222 domain compare
Ga0059261_3622 +0.3 1.9 hypothetical protein compare
Ga0059261_4135 +0.3 2.1 DnaJ domain compare
Ga0059261_3308 +0.3 1.1 Uncharacterized conserved protein compare
Ga0059261_3519 +0.3 2.8 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Ga0059261_0451 +0.3 1.2 hypothetical protein compare
Ga0059261_1185 +0.3 1.6 Thiolase, C-terminal domain compare
Ga0059261_2120 +0.3 1.2 hypothetical protein compare
Ga0059261_0720 +0.3 1.2 Predicted small integral membrane protein compare
Ga0059261_3992 +0.3 0.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_3237 +0.3 1.4 hypothetical protein compare
Ga0059261_2076 +0.3 0.8 hypothetical protein compare
Ga0059261_4166 +0.3 2.1 hypothetical protein compare
Ga0059261_1513 +0.3 1.7 hypothetical protein compare
Ga0059261_3634 +0.3 1.4 Predicted membrane protein compare
Ga0059261_1181 +0.3 0.9 hypothetical protein compare
Ga0059261_1196 +0.3 1.2 hypothetical protein compare
Ga0059261_2019 +0.3 1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_1022 +0.3 1.1 hypothetical protein compare
Ga0059261_0777 +0.3 1.9 FecR family protein compare
Ga0059261_3706 +0.3 1.1 RF-1 domain compare
Ga0059261_1743 +0.3 0.6 hypothetical protein compare
Ga0059261_0910 +0.3 1.8 hypothetical protein compare
Ga0059261_0218 +0.3 1.9 Protein of unknown function (DUF2971) compare
Ga0059261_0593 +0.3 1.6 Outer membrane protein compare
Ga0059261_3441 +0.3 1.0 hypothetical protein compare
Ga0059261_2347 +0.3 1.1 hypothetical protein compare
Ga0059261_3605 +0.3 1.0 tRNA compare
Ga0059261_2763 +0.3 1.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Ga0059261_0357 +0.3 1.0 hypothetical protein compare
Ga0059261_0821 +0.3 1.4 hypothetical protein compare
Ga0059261_0802 +0.3 1.3 protein-export chaperone SecB compare
Ga0059261_3492 +0.3 1.7 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_1016 +0.3 1.0 Cupin domain compare
Ga0059261_2018 +0.3 2.1 hypothetical protein compare
Ga0059261_0466 +0.3 1.8 RND family efflux transporter, MFP subunit compare
Ga0059261_3944 +0.3 1.2 hypothetical protein compare
Ga0059261_2118 +0.3 1.8 flagellar motor stator protein MotA compare
Ga0059261_0133 +0.3 0.9 GTP-binding protein HflX compare
Ga0059261_0957 +0.3 0.7 Protein of unknown function (DUF2798) compare
Ga0059261_2715 +0.3 1.6 hypothetical protein compare
Ga0059261_0579 +0.3 2.3 Neutral trehalase compare
Ga0059261_0898 +0.3 1.0 Membrane protein implicated in regulation of membrane protease activity compare
Ga0059261_3367 +0.3 1.2 hypothetical protein compare
Ga0059261_1799 +0.3 1.0 Uncharacterized protein conserved in bacteria (DUF2059) compare
Ga0059261_2579 +0.3 2.0 Plasmid replication initiator protein compare
Ga0059261_0379 +0.3 1.0 DNA binding domain, excisionase family compare
Ga0059261_1497 +0.3 1.6 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
Ga0059261_3664 +0.3 1.3 hypothetical protein compare
Ga0059261_0742 +0.3 1.7 Uncharacterized small membrane protein compare
Ga0059261_0781 +0.3 0.8 hypothetical protein compare
Ga0059261_0412 +0.3 0.9 DNA-binding HTH domain-containing proteins compare
Ga0059261_3396 +0.3 1.6 hypothetical protein compare
Ga0059261_1357 +0.3 1.6 hypothetical protein compare
Ga0059261_3274 +0.3 1.7 Glyoxalase-like domain compare
Ga0059261_1577 +0.2 2.3 L-glutamine and L-histidine transporter (from data) compare
Ga0059261_3562 +0.2 1.1 Glycosyltransferase compare
Ga0059261_3707 +0.2 1.7 Predicted DNA alkylation repair enzyme compare
Ga0059261_1485 +0.2 1.4 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Ga0059261_0216 +0.2 1.6 transcription elongation factor GreB compare
Ga0059261_1499 +0.2 1.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Ga0059261_0844 +0.2 1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_0455 +0.2 1.5 transcriptional regulator, AraC family compare
Ga0059261_2358 +0.2 1.8 Bacteriophage CI repressor helix-turn-helix domain compare
Ga0059261_1937 +0.2 1.3 Protein of unknown function (DUF2807) compare
Ga0059261_3834 +0.2 1.5 Molecular chaperone (small heat shock protein) compare
Ga0059261_0846 +0.2 1.3 Zn-dependent alcohol dehydrogenases, class III compare
Ga0059261_0272 +0.2 1.0 Uncharacterized small protein compare
Ga0059261_0645 +0.2 1.1 DNA replication and repair protein RecR compare
Ga0059261_1958 +0.2 1.0 Transcriptional regulators compare
Ga0059261_3360 +0.2 1.6 Dienelactone hydrolase and related enzymes compare
Ga0059261_3366 +0.2 0.8 hypothetical protein compare
Ga0059261_0047 +0.2 1.2 Predicted aminopeptidases compare
Ga0059261_0220 +0.2 1.5 L-serine dehydratase, iron-sulfur-dependent, single chain form compare
Ga0059261_2324 +0.2 1.0 integration host factor, alpha subunit compare
Ga0059261_2587 +0.2 0.8 hypothetical protein compare
Ga0059261_2713 +0.2 0.7 hypothetical protein compare
Ga0059261_2846 +0.2 1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_1680 +0.2 1.5 NAD-dependent aldehyde dehydrogenases compare
Ga0059261_3437 +0.2 0.5 hypothetical protein compare
Ga0059261_1538 +0.2 1.0 Predicted transcriptional regulators compare
Ga0059261_0137 +0.2 1.2 nitrogen regulation protein NR(I) compare
Ga0059261_2436 +0.2 1.2 hypothetical protein compare
Ga0059261_0285 +0.2 1.7 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] compare
Ga0059261_0045 +0.2 0.9 hypothetical protein compare
Ga0059261_1625 +0.2 1.5 2-keto-3-deoxy-6-phosphogluconate aldolase compare
Ga0059261_1652 +0.2 0.5 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
Ga0059261_2270 +0.2 1.2 hypothetical protein compare
Ga0059261_2063 +0.2 1.0 Flagellar biosynthesis protein, FliO compare
Ga0059261_0562 +0.2 1.1 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component compare
Ga0059261_0420 +0.2 1.0 FecR family protein compare
Ga0059261_2796 +0.2 1.3 hypothetical protein compare
Ga0059261_0493 +0.2 0.5 hypothetical protein compare
Ga0059261_3009 +0.2 1.3 Acetyltransferase (GNAT) domain compare
Ga0059261_0129 +0.2 1.4 MazG family protein compare
Ga0059261_1897 +0.2 1.4 Transcriptional regulators compare
Ga0059261_3168 +0.2 1.1 peroxiredoxin, OsmC subfamily compare
Ga0059261_3783 +0.2 1.0 hypothetical protein compare
Ga0059261_0840 +0.2 1.3 Acyl-CoA dehydrogenases compare
Ga0059261_1084 +0.2 1.5 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain compare
Ga0059261_2309 +0.2 1.2 transcriptional regulator, LacI family compare
Ga0059261_2914 +0.2 0.8 Type IV secretory pathway, TrbD component compare
Ga0059261_3335 +0.2 0.8 hypothetical protein compare
Ga0059261_3376 +0.2 1.3 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Ga0059261_2050 +0.2 1.0 hypothetical protein compare
Ga0059261_0284 +0.2 1.4 Leucyl aminopeptidase compare
Ga0059261_4051 +0.2 0.9 Transcriptional regulator compare
Ga0059261_3432 +0.2 0.8 leucyl/phenylalanyl-tRNA--protein transferase compare
Ga0059261_2882 +0.2 1.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_1716 +0.2 1.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_0014 +0.2 1.3 phosphopyruvate hydratase compare
Ga0059261_0829 +0.2 1.5 Transcriptional regulators compare
Ga0059261_2400 +0.2 1.2 Uncharacterized conserved protein compare
Ga0059261_0371 +0.2 1.5 DNA mismatch repair protein MutL compare
Ga0059261_0897 +0.2 1.5 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_2109 +0.2 0.8 hypothetical protein compare
Ga0059261_3646 +0.2 0.9 Uncharacterized stress protein (general stress protein 26) compare
Ga0059261_1146 +0.2 0.8 Flagellar basal body L-ring protein compare
Ga0059261_1163 +0.2 0.9 Copper chaperone compare
Ga0059261_2972 +0.2 1.7 transcriptional regulator, LacI family compare
Ga0059261_3810 +0.2 0.9 Transcriptional regulators compare
Ga0059261_2245 +0.2 1.4 hypothetical protein compare
Ga0059261_2125 +0.2 1.3 ATP-dependent helicase HrpB compare
Ga0059261_3279 +0.2 1.2 Ubiquinone biosynthesis protein COQ7 compare
Ga0059261_3451 +0.2 0.4 hypothetical protein compare
Ga0059261_3940 +0.2 1.3 hypothetical protein compare
Ga0059261_0863 +0.2 1.5 Glutathione S-transferase compare
Ga0059261_0433 +0.2 0.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_1401 +0.2 1.4 transcriptional regulator, HxlR family compare
Ga0059261_1570 +0.2 1.4 N-formylglutamate amidohydrolase compare
Ga0059261_3602 +0.2 0.8 Glutaredoxin, GrxC family compare
Ga0059261_2626 +0.2 1.3 transcriptional regulator, DeoR family compare
Ga0059261_3959 +0.2 0.7 MerC mercury resistance protein compare
Ga0059261_3886 +0.2 1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_2222 +0.2 1.2 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Ga0059261_2119 +0.2 0.7 Flagellar motor protein compare
Ga0059261_4011 +0.2 0.9 hypothetical protein compare
Ga0059261_0390 +0.2 0.4 Ribbon-helix-helix protein, copG family compare
Ga0059261_3193 +0.2 1.7 Dolichyl-phosphate-mannose-protein mannosyltransferase compare
Ga0059261_1763 +0.2 0.9 hypothetical protein compare
Ga0059261_1517 +0.2 1.3 Predicted acetyltransferase compare


Specific Phenotypes

For 1 genes in this experiment

For stress Vanillin in Sphingomonas koreensis DSMZ 15582

For stress Vanillin across organisms