Experiment set4IT028 for Methanococcus maripaludis S2

Compare to:

H2 deepwell acetate and vitamin FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS07630 -4.7 -2.1 ATP-binding cassette domain-containing protein compare
MMP_RS06730 -3.4 -2.8 phosphopantothenate/pantothenate synthetase compare
MMP_RS07730 -3.0 -2.7 pyruvate synthase subunit beta compare
MMP_RS09020 -2.9 -2.0 hypothetical protein compare
MMP_RS01175 -2.8 -6.1 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06285 -2.7 -3.1 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS02280 -2.7 -1.2 DUF211 domain-containing protein compare
MMP_RS04605 -2.6 -5.2 cobalt ECF transporter T component CbiQ compare
MMP_RS01225 -2.6 -5.7 DUF5379 domain-containing protein compare
MMP_RS02240 -2.6 -5.3 methanogenesis marker 7 protein compare
MMP_RS02195 -2.6 -4.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS07845 -2.6 -3.2 LL-diaminopimelate aminotransferase compare
MMP_RS03400 -2.6 -3.7 archease compare
MMP_RS01020 -2.5 -1.3 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03015 -2.5 -10.7 GTP 3' 8-cyclase MoaA compare
MMP_RS07545 -2.4 -1.4 HTH domain-containing protein compare
MMP_RS00515 -2.4 -1.3 DUF655 domain-containing protein compare
MMP_RS08210 -2.4 -2.4 phosphatidylglycerophosphatase A compare
MMP_RS06120 -2.4 -2.7 UPF0147 family protein compare
MMP_RS07005 -2.3 -0.9 4Fe-4S binding protein compare
MMP_RS05515 -2.3 -10.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01385 -2.3 -0.8 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS08650 -2.3 -4.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS00695 -2.3 -1.2 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS02135 -2.3 -5.3 DUF5612 domain-containing protein compare
MMP_RS04615 -2.2 -5.7 PDGLE domain-containing protein compare
MMP_RS04620 -2.2 -10.9 cobalt transporter CbiM compare
MMP_RS01610 -2.2 -2.8 hypothetical protein compare
MMP_RS08720 -2.2 -2.1 4Fe-4S binding protein compare
MMP_RS01220 -2.2 -9.7 hypothetical protein compare
MMP_RS08435 -2.2 -3.0 Era-like GTP-binding protein compare
MMP_RS01700 -2.2 -1.4 dihydroxy-acid dehydratase compare
MMP_RS01795 -2.1 -2.1 methanogenesis marker 6 protein compare
MMP_RS06350 -2.1 -6.6 HesA/MoeB/ThiF family protein compare
MMP_RS06315 -2.1 -1.3 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS06925 -2.1 -3.3 ribonuclease VapC4 compare
MMP_RS06355 -2.1 -2.7 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS00685 -2.1 -4.3 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06270 -2.0 -6.8 TIGR00300 family protein compare
MMP_RS01500 -2.0 -2.8 CBS domain-containing protein compare
MMP_RS07635 -2.0 -6.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06475 -2.0 -5.9 FAD-dependent oxidoreductase compare
MMP_RS08745 -2.0 -8.0 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06630 -2.0 -1.2 UPF0058 family protein compare
MMP_RS02010 -2.0 -9.1 PHP domain-containing protein compare
MMP_RS00300 -2.0 -0.8 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07600 -1.9 -3.5 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07380 -1.9 -2.7 transcription elongation factor Spt5 compare
MMP_RS02900 -1.9 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS04500 -1.9 -12.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS01755 -1.8 -1.6 DUF2097 domain-containing protein compare
MMP_RS03250 -1.8 -4.1 MJ1244 family protein compare
MMP_RS06340 -1.8 -7.7 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS03600 -1.8 -2.5 triose-phosphate isomerase compare
MMP_RS03035 -1.8 -4.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS02800 -1.8 -7.1 nucleotidyltransferase domain-containing protein compare
MMP_RS06885 -1.8 -3.1 50S ribosome-binding GTPase compare
MMP_RS01955 -1.8 -2.9 hypothetical protein compare
MMP_RS00110 -1.8 -3.6 hypothetical protein compare
MMP_RS01830 -1.7 -2.2 tRNA-Val compare
MMP_RS01005 -1.7 -1.2 riboflavin synthase compare
MMP_RS06105 -1.7 -8.5 hydrogenase maturation peptidase HycI compare
MMP_RS08100 -1.7 -7.2 8-amino-7-oxononanoate synthase compare
MMP_RS01380 -1.7 -4.0 PHP domain-containing protein compare
MMP_RS07750 -1.7 -5.5 DUF357 domain-containing protein compare
MMP_RS05265 -1.7 -2.4 2-isopropylmalate synthase compare
MMP_RS01720 -1.7 -2.2 replication factor C large subunit compare
MMP_RS01265 -1.7 -4.0 hypothetical protein compare
MMP_RS05925 -1.7 -3.3 small nuclear ribonucleoprotein compare
MMP_RS06370 -1.7 -5.3 biotin synthase BioB compare
MMP_RS03700 -1.7 -7.9 sodium:proton antiporter compare
MMP_RS00985 -1.7 -4.8 CDC48 family AAA ATPase compare
MMP_RS03025 -1.6 -4.8 molybdenum cofactor guanylyltransferase compare
MMP_RS03640 -1.6 -4.2 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS08635 -1.6 -2.0 UbiA family prenyltransferase compare
MMP_RS08820 -1.6 -4.6 hypothetical protein compare
MMP_RS08715 -1.6 -2.4 formylmethanofuran dehydrogenase subunit B compare
MMP_RS06295 -1.6 -5.9 methanogenesis marker 14 protein compare
MMP_RS02235 -1.6 -7.1 CBS domain-containing protein compare
MMP_RS02875 -1.6 -7.5 chorismate pyruvate-lyase family protein compare
MMP_RS03315 -1.6 -1.5 ferrous iron transport protein A compare
MMP_RS04585 -1.6 -9.8 AIR synthase related protein compare
MMP_RS06020 -1.6 -4.5 archaeoflavoprotein AfpA compare
MMP_RS06895 -1.6 -2.3 selenocysteine-specific translation elongation factor compare
MMP_RS03155 -1.5 -8.1 precorrin-6A reductase compare
MMP_RS04780 -1.5 -3.4 ribonuclease P compare
MMP_RS05425 -1.5 -4.3 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01840 -1.5 -6.7 TIGR00289 family protein compare
MMP_RS03960 -1.5 -0.9 hypothetical protein compare
MMP_RS01195 -1.5 -1.4 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06230 -1.5 -2.5 helix-turn-helix domain-containing protein compare
MMP_RS00130 -1.4 -1.3 nickel-responsive transcriptional regulator NikR compare
MMP_RS06625 -1.4 -2.2 DNA primase compare
MMP_RS04775 -1.4 -3.3 adenosylhomocysteinase compare
MMP_RS08330 -1.4 -5.8 NADH-quinone oxidoreductase subunit H compare
MMP_RS00810 -1.4 -6.3 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS07625 -1.4 -2.9 cobalt ECF transporter T component CbiQ compare
MMP_RS06130 -1.4 -4.1 peptidylprolyl isomerase compare
MMP_RS00120 -1.4 -4.8 LysR family transcriptional regulator compare
MMP_RS05930 -1.4 -2.2 3-isopropylmalate dehydratase large subunit compare
MMP_RS07525 -1.4 -6.6 4Fe-4S binding protein compare
MMP_RS06865 -1.4 -2.8 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS08095 -1.4 -6.1 dethiobiotin synthase compare
MMP_RS06685 -1.4 -7.6 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS00895 -1.4 -4.2 hypothetical protein compare
MMP_RS07575 -1.4 -2.8 RNA ligase partner protein compare
MMP_RS05430 -1.4 -4.6 TIGR00288 family NYN domain-containing protein compare
MMP_RS01800 -1.3 -3.7 TIGR00303 family protein compare
MMP_RS07390 -1.3 -2.1 cell division protein FtsZ compare
MMP_RS02165 -1.3 -5.4 tRNA-dihydrouridine synthase compare
MMP_RS02145 -1.3 -5.8 winged helix-turn-helix transcriptional regulator compare
MMP_RS08790 -1.3 -1.7 translation initiation factor IF-2 subunit alpha compare
MMP_RS05540 -1.3 -3.3 hypothetical protein compare
MMP_RS08300 -1.3 -0.9 metal-sulfur cluster assembly factor compare
MMP_RS06700 -1.3 -7.3 hypothetical protein compare
MMP_RS07645 -1.3 -5.2 aldehyde dehydrogenase family protein compare
MMP_RS04685 -1.3 -1.8 DUF126 domain-containing protein compare
MMP_RS08105 -1.3 -5.8 6-carboxyhexanoate--CoA ligase compare
MMP_RS02345 -1.3 -2.9 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS02245 -1.3 -2.9 hypothetical protein compare
MMP_RS03095 -1.3 -5.6 diphthine synthase compare
MMP_RS00320 -1.3 -1.9 class I SAM-dependent methyltransferase compare
MMP_RS01325 -1.3 -2.0 dihydroneopterin aldolase family protein compare
MMP_RS07875 -1.3 -4.4 hypothetical protein compare
MMP_RS04890 -1.3 -0.9 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS07445 -1.3 -4.0 helix-turn-helix domain-containing protein compare
MMP_RS08940 -1.3 -1.3 MetS family NSS transporter small subunit compare
MMP_RS00305 -1.3 -1.6 phosphoribosyl-ATP diphosphatase compare
MMP_RS01885 -1.2 -5.8 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS06400 -1.2 -1.6 4Fe-4S binding protein compare
MMP_RS01925 -1.2 -5.3 DUF1616 domain-containing protein compare
MMP_RS07615 -1.2 -5.2 energy-coupling factor ABC transporter permease compare
MMP_RS07695 -1.2 -4.8 DUF3236 domain-containing protein compare
MMP_RS07955 -1.2 -5.7 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS02885 -1.2 -8.5 molybdopterin biosynthesis protein compare
MMP_RS00115 -1.2 -7.7 radical SAM protein compare
MMP_RS06840 -1.2 -0.9 DNA-directed RNA polymerase subunit N compare
MMP_RS03145 -1.2 -3.6 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS08460 -1.2 -1.9 proteasome-activating nucleotidase compare
MMP_RS03140 -1.2 -7.5 hypothetical protein compare
MMP_RS03580 -1.1 -1.9 signal recognition particle-docking protein FtsY compare
MMP_RS02470 -1.1 -1.4 helix-turn-helix transcriptional regulator compare
MMP_RS07425 -1.1 -3.8 GTP-binding protein compare
MMP_RS04720 -1.1 -1.5 DedA family protein compare
MMP_RS08440 -1.1 -2.0 cell division protein SepF compare
MMP_RS00315 -1.1 -5.8 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS06725 -1.1 -6.5 hypothetical protein compare
MMP_RS05920 -1.1 -0.5 50S ribosomal protein L37e compare
MMP_RS00725 -1.1 -4.4 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS06900 -1.1 -2.4 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS07355 -1.1 -0.9 transcription factor S compare
MMP_RS02190 -1.1 -1.8 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS01335 -1.1 -2.1 prefoldin subunit beta compare
MMP_RS08645 -1.1 -5.3 UPF0179 family protein compare
MMP_RS07420 -1.1 -3.9 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS01545 -1.1 -1.0 CBS domain-containing protein compare
MMP_RS08360 -1.1 -3.5 hypothetical protein compare
MMP_RS07195 -1.1 -6.5 M20 family metallo-hydrolase compare
MMP_RS08320 -1.1 -3.1 molybdopterin molybdotransferase MoeA compare
MMP_RS04875 -1.1 -4.5 energy-converting hydrogenase B subunit P compare
MMP_RS04955 -1.0 -4.8 DNA topoisomerase I compare
MMP_RS04850 -1.0 -8.8 UPF0254 family protein compare
MMP_RS06680 -1.0 -5.4 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS02130 -1.0 -3.8 zinc metalloprotease HtpX compare
MMP_RS01875 -1.0 -5.4 N-acetyltransferase compare
MMP_RS02790 -1.0 -1.1 class III signal peptide-containing protein compare
MMP_RS05815 -1.0 -2.0 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS01905 -1.0 -7.0 glycosyltransferase compare
MMP_RS06705 -1.0 -3.4 formate/nitrite transporter family protein compare
MMP_RS03205 -1.0 -1.0 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS05450 -1.0 -2.5 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS01895 -1.0 -6.5 flippase compare
MMP_RS01665 -1.0 -2.4 DUF2111 domain-containing protein compare
MMP_RS03385 -1.0 -0.9 cation diffusion facilitator family transporter compare
MMP_RS07200 -1.0 -3.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS06855 -1.0 -5.3 hypothetical protein compare
MMP_RS05555 -1.0 -1.1 DUF4040 domain-containing protein compare
MMP_RS01725 -1.0 -2.3 class I SAM-dependent methyltransferase family protein compare
MMP_RS05950 -1.0 -6.2 nickel-dependent hydrogenase large subunit compare
MMP_RS07435 -1.0 -1.6 GMP synthase subunit A compare
MMP_RS05845 -0.9 -1.6 tRNA-intron lyase compare
MMP_RS00735 -0.9 -3.0 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS05525 -0.9 -4.1 calcium/sodium antiporter compare
MMP_RS02355 -0.9 -1.5 30S ribosomal protein S27ae compare
MMP_RS04710 -0.9 -0.9 hypothetical protein compare
MMP_RS05345 -0.9 -4.7 hypothetical protein compare
MMP_RS06720 -0.9 -4.1 response regulator transcription factor compare
MMP_RS08600 -0.9 -1.7 flagellar protein D compare
MMP_RS07900 -0.9 -2.4 YeeE/YedE family protein compare
MMP_RS01975 -0.9 -6.5 hypothetical protein compare
MMP_RS06215 -0.9 -2.0 30S ribosomal protein S6e compare
MMP_RS05545 -0.9 -3.3 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS00050 -0.9 -3.8 AarF/UbiB family protein compare
MMP_RS05445 -0.9 -4.3 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS01900 -0.9 -5.5 hypothetical protein compare
MMP_RS07605 -0.9 -1.7 diadenylate cyclase compare
MMP_RS08840 -0.9 -6.1 class I SAM-dependent methyltransferase compare
MMP_RS01365 -0.9 -1.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS05850 -0.9 -3.0 Ldh family oxidoreductase compare
MMP_RS00730 -0.9 -2.6 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 casamino acids across organisms