Experiment set4IT028 for Methanococcus maripaludis JJ

Compare to:

Iron limitation (0.2x), H2 media

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00570 -5.8 -3.0 ribonuclease P compare
MMJJ_RS05450 -5.8 -20.2 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS04200 -5.6 -6.7 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS05935 -5.3 -3.5 Era-like GTP-binding protein compare
MMJJ_RS02920 -5.2 -3.1 30S ribosomal protein S27ae compare
MMJJ_RS02045 -5.1 -4.7 molybdenum cofactor guanylyltransferase compare
MMJJ_RS06625 -5.1 -3.0 pyruvate synthase subunit PorB compare
MMJJ_RS06600 -4.9 -3.2 DUF555 domain-containing protein compare
MMJJ_RS07950 -4.8 -4.6 4Fe-4S binding protein compare
MMJJ_RS04485 -4.8 -11.6 riboflavin synthase compare
MMJJ_RS01935 -4.7 -5.6 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS03615 -4.6 -4.5 cobalt-precorrin-8 methylmutase compare
MMJJ_RS04475 -4.6 -5.4 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS06725 -4.6 -16.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS05070 -4.5 -3.0 DNA primase catalytic subunit PriS compare
MMJJ_RS08855 -4.5 -5.4 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS07000 -4.5 -2.6 TrkH family potassium uptake protein compare
MMJJ_RS05950 -4.4 -3.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS03110 -4.4 -5.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS04995 -4.3 -7.2 Tfx family DNA-binding protein compare
MMJJ_RS02200 -4.3 -12.9 chorismate pyruvate-lyase family protein compare
MMJJ_RS05930 -4.3 -2.8 cell division protein SepF compare
MMJJ_RS03670 -4.3 -6.4 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS07350 -4.2 -4.0 4Fe-4S binding protein compare
MMJJ_RS03580 -4.1 -4.9 TIGR00303 family protein compare
MMJJ_RS06930 -4.1 -3.6 type II methionyl aminopeptidase compare
MMJJ_RS03840 -4.1 -4.0 DHH family phosphoesterase compare
MMJJ_RS01810 -4.1 -2.9 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06695 -4.0 -4.6 amidohydrolase compare
MMJJ_RS00235 -4.0 -20.0 hypothetical protein compare
MMJJ_RS07380 -4.0 -11.9 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS01880 -4.0 -4.2 RlmE family RNA methyltransferase compare
MMJJ_RS03760 -3.9 -5.3 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS06040 -3.8 -5.8 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS01415 -3.8 -3.7 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS03865 -3.8 -1.8 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS00275 -3.8 -3.5 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS08095 -3.7 -5.7 cobyric acid synthase CobQ compare
MMJJ_RS04730 -3.7 -3.6 tyrosine decarboxylase MfnA compare
MMJJ_RS02090 -3.7 -8.1 tyramine--L-glutamate ligase compare
MMJJ_RS08850 -3.7 -3.5 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS06225 -3.7 -3.0 adenosylmethionine decarboxylase compare
MMJJ_RS08625 -3.6 -8.7 magnesium/cobalt transporter CorA compare
MMJJ_RS00560 -3.6 -4.9 homoisocitrate dehydrogenase compare
MMJJ_RS01865 -3.6 -8.1 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS06180 -3.6 -3.5 tryptophan--tRNA ligase compare
MMJJ_RS03060 -3.6 -4.6 methanogenesis marker 7 protein compare
MMJJ_RS05610 -3.6 -5.4 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS06490 -3.5 -4.1 methanogenesis marker 2 protein compare
MMJJ_RS06750 -3.5 -3.4 homoaconitase large subunit compare
MMJJ_RS00645 -3.5 -14.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS08035 -3.5 -9.2 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS00125 -3.5 -3.3 KEOPS complex subunit Cgi121 compare
MMJJ_RS00580 -3.5 -2.4 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS07430 -3.5 -4.8 ribonuclease VapC compare
MMJJ_RS06270 -3.5 -10.7 dethiobiotin synthase compare
MMJJ_RS05445 -3.4 -3.3 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS01750 -3.4 -3.6 ferrous iron transport protein A compare
MMJJ_RS00600 -3.4 -4.2 hydroxymethylbilane synthase compare
MMJJ_RS04800 -3.4 -8.5 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS03620 -3.4 -8.1 DUF2097 domain-containing protein compare
MMJJ_RS08250 -3.3 -9.4 hydrogenase maturation peptidase HycI compare
MMJJ_RS08320 -3.3 -2.5 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS03055 -3.3 -3.4 hypothetical protein compare
MMJJ_RS06110 -3.3 -3.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS04565 -3.3 -4.4 sirohydrochlorin nickelochelatase compare
MMJJ_RS02275 -3.3 -6.0 nucleotidyltransferase domain-containing protein compare
MMJJ_RS05490 -3.3 -3.8 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS07995 -3.2 -8.3 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS00270 -3.2 -5.3 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS00215 -3.2 -3.3 CCA tRNA nucleotidyltransferase compare
MMJJ_RS05650 -3.2 -4.1 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS05065 -3.2 -5.7 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS00355 -3.2 -4.1 ribonuclease P protein component 4 compare
MMJJ_RS07980 -3.2 -12.4 biotin synthase BioB compare
MMJJ_RS03875 -3.2 -6.0 CBS domain-containing protein compare
MMJJ_RS06910 -3.2 -4.8 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS09175 -3.2 -1.7 anthranilate synthase component I compare
MMJJ_RS01350 -3.2 -8.4 sodium:proton antiporter compare
MMJJ_RS07360 -3.2 -2.1 TIGR00269 family protein compare
MMJJ_RS05260 -3.2 -8.2 ATP-grasp domain-containing protein compare
MMJJ_RS05590 -3.2 -2.8 homoserine dehydrogenase compare
MMJJ_RS09135 -3.1 -9.2 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS06155 -3.1 -6.1 phosphatidylglycerophosphatase A compare
MMJJ_RS01355 -3.1 -4.2 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS03830 -3.1 -11.7 CBS domain-containing protein compare
MMJJ_RS07785 -3.1 -3.9 fumarate reductase subunit A compare
MMJJ_RS01200 -3.1 -3.6 PRC-barrel domain-containing protein compare
MMJJ_RS03785 -3.1 -3.4 hypothetical protein compare
MMJJ_RS08080 -3.1 -9.6 TIGR00300 family protein compare
MMJJ_RS07410 -3.1 -5.8 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS01360 -3.1 -3.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS08535 -3.1 -4.3 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS08330 -3.1 -3.9 SufD family Fe-S cluster assembly protein compare
MMJJ_RS00210 -3.1 -3.2 DUF530 family protein compare
MMJJ_RS05995 -3.0 -3.6 ATP-binding cassette domain-containing protein compare
MMJJ_RS08000 -3.0 -11.1 HesA/MoeB/ThiF family protein compare
MMJJ_RS04155 -3.0 -8.0 hypothetical protein compare
MMJJ_RS07190 -3.0 -5.3 RtcB family protein compare
MMJJ_RS05620 -3.0 -5.7 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS00205 -3.0 -5.9 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS08575 -3.0 -5.5 hypothetical protein compare
MMJJ_RS09375 -3.0 -2.2 hypothetical protein compare
MMJJ_RS03200 -3.0 -3.1 uroporphyrinogen-III synthase compare
MMJJ_RS00425 -3.0 -3.7 hypothetical protein compare
MMJJ_RS03800 -3.0 -13.9 aldolase compare
MMJJ_RS04685 -3.0 -9.9 carbamoyltransferase HypF compare
MMJJ_RS05810 -2.9 -7.9 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS00450 -2.9 -2.5 DUF126 domain-containing protein compare
MMJJ_RS04790 -2.9 -5.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS00370 -2.9 -2.7 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS09035 -2.9 -6.7 OB-fold nucleic acid binding domain-containing protein compare
MMJJ_RS08055 -2.9 -6.7 methanogenesis marker 14 protein compare
MMJJ_RS05225 -2.9 -2.0 Gar1/Naf1 family protein compare
MMJJ_RS09190 -2.8 -2.9 tryptophan synthase subunit beta compare
MMJJ_RS03095 -2.8 -3.4 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS08020 -2.8 -8.6 nucleotidyltransferase domain-containing protein compare
MMJJ_RS00475 -2.8 -3.2 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS06905 -2.8 -2.3 hypothetical protein compare
MMJJ_RS04985 -2.8 -5.2 glutamyl-tRNA reductase compare
MMJJ_RS06510 -2.8 -4.0 LL-diaminopimelate aminotransferase compare
MMJJ_RS07725 -2.8 -7.8 DNA primase DnaG compare
MMJJ_RS04970 -2.8 -2.5 DUF655 domain-containing protein compare
MMJJ_RS06860 -2.8 -5.6 hypothetical protein compare
MMJJ_RS05575 -2.7 -6.2 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS04700 -2.7 -6.9 deoxyhypusine synthase compare
MMJJ_RS07945 -2.7 -2.9 4Fe-4S binding protein compare
MMJJ_RS01815 -2.7 -5.1 DUF134 domain-containing protein compare
MMJJ_RS07720 -2.7 -2.2 UPF0058 family protein compare
MMJJ_RS00195 -2.7 -4.2 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS04050 -2.6 -2.5 dihydroneopterin aldolase family protein compare
MMJJ_RS04110 -2.6 -5.7 hypothetical protein compare
MMJJ_RS03125 -2.6 -4.2 GMC oxidoreductase compare
MMJJ_RS08340 -2.6 -5.0 archaeoflavoprotein AfpA compare
MMJJ_RS05295 -2.6 -9.5 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS03820 -2.6 -4.8 hydrogenase formation protein HypD compare
MMJJ_RS09130 -2.6 -2.2 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS06260 -2.6 -7.3 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS06265 -2.6 -14.0 8-amino-7-oxononanoate synthase compare
MMJJ_RS03660 -2.6 -4.6 DUF447 family protein compare
MMJJ_RS09095 -2.6 -10.6 MMPL family transporter compare
MMJJ_RS02055 -2.6 -13.0 GTP 3',8-cyclase MoaA compare
MMJJ_RS08010 -2.6 -6.3 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS04150 -2.6 -3.4 DUF5379 domain-containing protein compare
MMJJ_RS03170 -2.6 -9.5 DUF5612 domain-containing protein compare
MMJJ_RS06840 -2.6 -4.7 nickel-dependent hydrogenase large subunit compare
MMJJ_RS04145 -2.5 -9.0 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS04675 -2.5 -7.6 thiamine pyrophosphate-binding protein compare
MMJJ_RS08840 -2.5 -5.0 calcium/sodium antiporter compare
MMJJ_RS00265 -2.5 -8.5 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS03150 -2.5 -8.3 2-phospho-L-lactate transferase compare
MMJJ_RS03005 -2.5 -4.5 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS08660 -2.5 -3.7 acetylornithine transaminase compare
MMJJ_RS01755 -2.5 -3.2 ferrous iron transport protein B compare
MMJJ_RS07245 -2.5 -5.6 amidohydrolase family protein compare
MMJJ_RS03065 -2.5 -10.2 CBS domain-containing protein compare
MMJJ_RS01960 -2.4 -6.3 glycosyltransferase family 2 protein compare
MMJJ_RS06220 -2.4 -5.3 polyamine aminopropyltransferase compare
MMJJ_RS05330 -2.4 -3.1 DNA polymerase II large subunit compare
MMJJ_RS04975 -2.4 -2.6 glycosyltransferase family 4 protein compare
MMJJ_RS03230 -2.4 -4.7 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS07455 -2.4 -7.4 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS01830 -2.4 -4.3 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS06805 -2.4 -2.8 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS06175 -2.4 -3.4 DUF1743 domain-containing protein compare
MMJJ_RS06240 -2.4 -2.9 dihydropteroate synthase-like protein compare
MMJJ_RS07370 -2.4 -4.0 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS03895 -2.4 -3.4 hydrogenase expression/formation protein HypE compare
MMJJ_RS01870 -2.3 -2.7 methanogenesis marker 15 protein compare
MMJJ_RS01600 -2.3 -3.0 radical SAM protein compare
MMJJ_RS07275 -2.3 -3.8 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS04655 -2.3 -5.9 FAD-dependent oxidoreductase compare
MMJJ_RS03160 -2.3 -10.6 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS04520 -2.3 -4.4 coenzyme F430 synthase compare
MMJJ_RS01475 -2.3 -2.2 signal recognition particle-docking protein FtsY compare
MMJJ_RS03270 -2.2 -2.6 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS08155 -2.2 -3.8 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS07155 -2.2 -9.8 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS03295 -2.2 -13.3 PHP domain-containing protein compare
MMJJ_RS07355 -2.2 -6.7 MoaD/ThiS family protein compare
MMJJ_RS07265 -2.2 -9.4 tRNA (adenine-N1)-methyltransferase compare
MMJJ_RS06170 -2.2 -8.5 hypothetical protein compare
MMJJ_RS06375 -2.2 -3.1 UbiX family flavin prenyltransferase compare
MMJJ_RS06650 -2.2 -12.7 cell division protein FtsZ compare
MMJJ_RS06390 -2.2 -2.4 NADPH-dependent F420 reductase compare
MMJJ_RS04010 -2.2 -5.7 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS04615 -2.1 -3.5 methanogenesis marker 3 protein compare
MMJJ_RS03845 -2.1 -3.8 translation initiation factor IF-2 compare
MMJJ_RS05655 -2.1 -5.5 HisA/HisF family protein compare
MMJJ_RS06185 -2.1 -4.1 cobalamin biosynthesis protein compare
MMJJ_RS06700 -2.1 -4.1 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS01690 -2.1 -3.0 methanogenesis marker 12 protein compare
MMJJ_RS05780 -2.1 -2.9 flagellin compare
MMJJ_RS07705 -2.1 -2.4 GTP-binding protein EngB compare
MMJJ_RS06485 -2.1 -3.5 phosphoglycerate kinase compare
MMJJ_RS06250 -2.1 -3.0 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS09100 -2.1 -9.3 COG1361 S-layer family protein compare
MMJJ_RS06000 -2.1 -4.7 cation:proton antiporter subunit C compare
MMJJ_RS06050 -2.1 -6.6 molybdopterin molybdotransferase MoeA compare
MMJJ_RS03650 -2.1 -6.6 class I SAM-dependent methyltransferase family protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in iron experiments

For iron Iron (II) chloride tetrahydrate across organisms