Experiment set4IT027 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with 5-Hydroxymethylfurfural 2.5 mM

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_0242 +0.8 2.5 hypothetical protein compare
Ga0059261_0685 +0.8 2.3 pyruvate kinase compare
Ga0059261_4060 +0.7 2.6 Predicted membrane protein compare
Ga0059261_3356 +0.7 1.3 hypothetical protein compare
Ga0059261_3992 +0.7 1.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_3085 +0.6 1.7 Predicted transcriptional regulators compare
Ga0059261_0411 +0.6 2.0 Uncharacterized conserved protein compare
Ga0059261_0208 +0.6 2.0 Response regulator receiver domain compare
Ga0059261_0433 +0.5 1.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_0657 +0.5 1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_3833 +0.5 1.8 hypothetical protein compare
Ga0059261_1557 +0.5 3.6 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase compare
Ga0059261_0379 +0.5 2.0 DNA binding domain, excisionase family compare
Ga0059261_0720 +0.5 2.1 Predicted small integral membrane protein compare
Ga0059261_3604 +0.5 1.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_1138 +0.5 1.8 hypothetical protein compare
Ga0059261_3598 +0.5 2.3 Flp pilus assembly protein, pilin Flp compare
Ga0059261_2581 +0.5 2.8 Uncharacterized conserved protein (DUF2285) compare
Ga0059261_2436 +0.4 2.8 hypothetical protein compare
Ga0059261_2939 +0.4 3.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_1022 +0.4 2.1 hypothetical protein compare
Ga0059261_2730 +0.4 1.2 Sortase and related acyltransferases compare
Ga0059261_3622 +0.4 2.5 hypothetical protein compare
Ga0059261_2188 +0.4 1.2 Uncharacterized conserved protein compare
Ga0059261_0690 +0.4 1.1 Acetyltransferases compare
Ga0059261_1315 +0.4 2.0 Alpha/beta hydrolase family compare
Ga0059261_3507 +0.4 3.5 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CHASE3 domain compare
Ga0059261_3518 +0.4 3.5 RND family efflux transporter, MFP subunit compare
Ga0059261_1732 +0.4 2.1 Flagellar hook capping protein - N-terminal region compare
Ga0059261_0252 +0.4 1.5 SpoIIAA-like compare
Ga0059261_3125 +0.4 1.1 Imidazoleglycerol-phosphate synthase compare
Ga0059261_4185 +0.4 0.8 hypothetical protein compare
Ga0059261_1707 +0.4 1.7 hypothetical protein compare
Ga0059261_0825 +0.4 1.8 Uncharacterized conserved protein compare
Ga0059261_1610 +0.4 2.2 CBS domain/Transporter associated domain compare
Ga0059261_1119 +0.4 1.3 Chemotaxis signal transduction protein compare
Ga0059261_1115 +0.4 0.8 Chemotaxis protein; stimulates methylation of MCP proteins compare
Ga0059261_0745 +0.4 1.5 Uncharacterized membrane protein, required for colicin V production compare
Ga0059261_1538 +0.4 1.2 Predicted transcriptional regulators compare
Ga0059261_2593 +0.3 1.5 hypothetical protein compare
Ga0059261_1016 +0.3 1.4 Cupin domain compare
Ga0059261_1208 +0.3 2.2 hypothetical protein compare
Ga0059261_1394 +0.3 2.3 putative efflux protein, MATE family compare
Ga0059261_0045 +0.3 1.5 hypothetical protein compare
Ga0059261_0315 +0.3 2.1 transcriptional regulator, Spx/MgsR family compare
Ga0059261_1958 +0.3 1.5 Transcriptional regulators compare
Ga0059261_3801 +0.3 1.8 Phosphate/sulphate permeases compare
Ga0059261_2663 +0.3 0.7 Domain of unknown function (DUF718) compare
Ga0059261_3579 +0.3 1.6 hypothetical protein compare
Ga0059261_3027 +0.3 1.5 Predicted transcriptional regulators compare
Ga0059261_2913 +0.3 1.1 Type IV secretory pathway, VirB2 components (pilins) compare
Ga0059261_2735 +0.3 1.3 Glyoxalase-like domain compare
Ga0059261_0654 +0.3 1.6 Chemotaxis signal transduction protein compare
Ga0059261_4046 +0.3 0.6 Response regulator receiver domain compare
Ga0059261_3164 +0.3 1.9 Protein of unknown function (DUF3297) compare
Ga0059261_1196 +0.3 1.2 hypothetical protein compare
Ga0059261_0420 +0.3 1.9 FecR family protein compare
Ga0059261_3879 +0.3 1.8 outer membrane autotransporter barrel domain compare
Ga0059261_2796 +0.3 2.1 hypothetical protein compare
Ga0059261_3345 +0.3 1.0 TlyA family rRNA methyltransferase/putative hemolysin compare
Ga0059261_2090 +0.3 1.9 flagellar basal-body rod protein FlgC compare
Ga0059261_3208 +0.3 0.8 hypothetical protein compare
Ga0059261_2916 +0.3 1.4 P-type conjugative transfer protein TrbJ compare
Ga0059261_3948 +0.3 1.1 type II secretion system protein H compare
Ga0059261_2342 +0.3 1.8 hypothetical protein compare
Ga0059261_2089 +0.3 1.6 flagellar basal-body rod protein FlgB compare
Ga0059261_0816 +0.3 0.9 hypothetical protein compare
Ga0059261_3605 +0.3 0.9 tRNA compare
Ga0059261_3620 +0.3 1.1 molybdenum cofactor biosynthesis protein A, bacterial compare
Ga0059261_2378 +0.3 1.0 phage virion morphogenesis (putative tail completion) protein compare
Ga0059261_0472 +0.3 1.0 Predicted metal-binding protein compare
Ga0059261_3233 +0.3 1.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_3886 +0.3 1.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_3367 +0.3 1.4 hypothetical protein compare
Ga0059261_3659 +0.3 1.2 PqqD family protein, HPr-rel-A system compare
Ga0059261_0557 +0.3 1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_0811 +0.3 1.1 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_0684 +0.3 1.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_0943 +0.3 2.0 Rhodanese-related sulfurtransferase compare
Ga0059261_1185 +0.3 1.0 Thiolase, C-terminal domain compare
Ga0059261_3161 +0.3 1.9 tol-pal system-associated acyl-CoA thioesterase compare
Ga0059261_1972 +0.3 1.7 Domain of unknown function (DUF3814) compare
Ga0059261_2843 +0.3 1.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_0416 +0.3 1.8 Transglutaminase-like superfamily compare
Ga0059261_1303 +0.3 1.6 hypothetical protein compare
Ga0059261_0493 +0.3 0.7 hypothetical protein compare
Ga0059261_0850 +0.3 0.7 hypothetical protein compare
Ga0059261_1530 +0.3 1.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Ga0059261_2768 +0.3 1.1 hypothetical protein compare
Ga0059261_0957 +0.3 0.7 Protein of unknown function (DUF2798) compare
Ga0059261_0848 +0.3 1.9 transcriptional regulator, TetR family compare
Ga0059261_4140 +0.3 1.3 hypothetical protein compare
Ga0059261_3859 +0.3 0.8 MgtC family compare
Ga0059261_4067 +0.3 2.0 Short-chain alcohol dehydrogenase of unknown specificity compare
Ga0059261_2914 +0.3 1.1 Type IV secretory pathway, TrbD component compare
Ga0059261_2489 +0.3 2.0 Predicted integral membrane protein compare
Ga0059261_0380 +0.3 1.5 Uncharacterized conserved small protein compare
Ga0059261_1035 +0.3 0.5 hypothetical protein compare
Ga0059261_0393 +0.3 0.7 hypothetical protein compare
Ga0059261_1114 +0.3 1.0 hypothetical protein compare
Ga0059261_1733 +0.2 1.7 hypothetical protein compare
Ga0059261_0911 +0.2 1.1 Domain of unknown function (DUF3597) compare
Ga0059261_1145 +0.2 0.7 flagella basal body P-ring formation protein FlgA compare
Ga0059261_3546 +0.2 1.6 hypothetical protein compare
Ga0059261_0834 +0.2 1.3 hypothetical protein compare
Ga0059261_2948 +0.2 1.3 Putative copper export protein compare
Ga0059261_4166 +0.2 1.8 hypothetical protein compare
Ga0059261_3020 +0.2 1.5 Copper binding periplasmic protein CusF compare
Ga0059261_1574 +0.2 1.1 Superfamily II DNA and RNA helicases compare
Ga0059261_1089 +0.2 0.9 Flagellar hook-length control protein compare
Ga0059261_2054 +0.2 1.8 Response regulator receiver domain compare
Ga0059261_1757 +0.2 1.5 Protein of unknown function (DUF4007) compare
Ga0059261_1577 +0.2 2.1 L-glutamine and L-histidine transporter (from data) compare
Ga0059261_0633 +0.2 0.8 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Ga0059261_4007 +0.2 0.6 Transcriptional regulators compare
Ga0059261_2028 +0.2 1.6 L-threonine aldolase (EC 4.1.2.5) compare
Ga0059261_2237 +0.2 1.6 Protein of unknown function (DUF1674) compare
Ga0059261_1570 +0.2 1.5 N-formylglutamate amidohydrolase compare
Ga0059261_3134 +0.2 1.8 hypothetical protein compare
Ga0059261_0558 +0.2 1.7 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Ga0059261_2413 +0.2 0.7 hypothetical protein compare
Ga0059261_0390 +0.2 0.4 Ribbon-helix-helix protein, copG family compare
Ga0059261_0600 +0.2 1.4 CDP-glucose 4,6-dehydratase compare
Ga0059261_1111 +0.2 1.3 PilZ domain compare
Ga0059261_0237 +0.2 0.8 phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Ga0059261_0059 +0.2 0.5 Stress-induced morphogen (activity unknown) compare
Ga0059261_2462 +0.2 0.8 Predicted transcriptional regulators compare
Ga0059261_3332 +0.2 1.5 Predicted membrane protein compare
Ga0059261_2018 +0.2 1.8 hypothetical protein compare
Ga0059261_4191 +0.2 1.5 polysaccharide chain length determinant protein, PEP-CTERM locus subfamily compare
Ga0059261_0220 +0.2 1.5 L-serine dehydratase, iron-sulfur-dependent, single chain form compare
Ga0059261_0864 +0.2 0.7 hypothetical protein compare
Ga0059261_2912 +0.2 1.5 P-type conjugative transfer ATPase TrbB compare
Ga0059261_4124 +0.2 1.4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Ga0059261_1316 +0.2 0.3 hypothetical protein compare
Ga0059261_0548 +0.2 1.6 Gluconate 2-dehydrogenase subunit 3 compare
Ga0059261_2429 +0.2 1.0 2'-5' RNA ligase superfamily compare
Ga0059261_3825 +0.2 1.2 thiol reductant ABC exporter, CydD subunit compare
Ga0059261_0827 +0.2 0.6 hypothetical protein compare
Ga0059261_1348 +0.2 1.4 Predicted membrane protein compare
Ga0059261_0014 +0.2 1.5 phosphopyruvate hydratase compare
Ga0059261_1401 +0.2 1.6 transcriptional regulator, HxlR family compare
Ga0059261_1625 +0.2 1.5 2-keto-3-deoxy-6-phosphogluconate aldolase compare
Ga0059261_1763 +0.2 0.9 hypothetical protein compare
Ga0059261_0679 +0.2 1.6 Protein related to penicillin acylase compare
Ga0059261_2570 +0.2 0.9 Type IV secretory pathway, TrbD component compare
Ga0059261_3839 +0.2 1.1 hypothetical protein compare
Ga0059261_3440 +0.2 0.5 hypothetical protein compare
Ga0059261_1430 +0.2 1.4 Acyl carrier protein phosphodiesterase compare
Ga0059261_3491 +0.2 1.4 hypothetical protein compare
Ga0059261_1849 +0.2 1.6 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Ga0059261_2568 +0.2 0.7 P-type conjugative transfer protein TrbJ compare
Ga0059261_1826 +0.2 0.9 Domain of unknown function (DUF1905) compare
Ga0059261_0844 +0.2 1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_2740 +0.2 1.3 hypothetical protein compare
Ga0059261_3708 +0.2 1.1 GAF domain-containing protein compare
Ga0059261_3807 +0.2 1.1 Uncharacterized conserved protein compare
Ga0059261_0723 +0.2 0.9 hypothetical protein compare
Ga0059261_0028 +0.2 1.2 Predicted transcriptional regulators compare
Ga0059261_2101 +0.2 1.1 Putative transposase of IS4/5 family (DUF4096) compare
Ga0059261_0853 +0.2 0.7 peroxiredoxin, Ohr subfamily compare
Ga0059261_2029 +0.2 1.2 diguanylate cyclase (GGDEF) domain compare
Ga0059261_3634 +0.2 1.1 Predicted membrane protein compare
Ga0059261_3669 +0.2 1.7 Beta-lactamase class C and other penicillin binding proteins compare
Ga0059261_2262 +0.2 1.5 Predicted acetyltransferase compare
Ga0059261_2255 +0.2 1.2 nitrogen regulatory protein P-II family compare
Ga0059261_0726 +0.2 0.6 hypothetical protein compare
Ga0059261_2182 +0.2 1.4 Predicted metal-dependent hydrolase compare
Ga0059261_0719 +0.2 0.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_3696 +0.2 1.2 hypothetical protein compare
Ga0059261_4161 +0.2 1.5 Predicted phosphoesterase compare
Ga0059261_2229 +0.2 0.8 Predicted transcriptional regulators compare
Ga0059261_1525 +0.2 1.3 Domain of unknown function (DUF4349) compare
Ga0059261_3884 +0.2 1.0 K+-transporting ATPase, B subunit compare
Ga0059261_4074 +0.2 1.3 two component transcriptional regulator, LuxR family compare
Ga0059261_4057 +0.2 1.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Ga0059261_0777 +0.2 1.3 FecR family protein compare
Ga0059261_3448 +0.2 1.4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily compare
Ga0059261_0405 +0.2 1.2 Uncharacterized conserved protein compare
Ga0059261_0988 +0.2 1.4 Uncharacterized FAD-dependent dehydrogenases compare
Ga0059261_2052 +0.2 1.0 siroheme synthase, N-terminal domain compare
Ga0059261_0821 +0.2 1.1 hypothetical protein compare
Ga0059261_3237 +0.2 1.0 hypothetical protein compare
Ga0059261_2259 +0.2 1.1 hypothetical protein compare
Ga0059261_3483 +0.2 0.9 segregation and condensation protein B compare
Ga0059261_0174 +0.2 0.3 hypothetical protein compare
Ga0059261_0032 +0.2 0.9 Protein of unknown function, DUF488 compare
Ga0059261_3270 +0.2 1.3 hypothetical protein compare
Ga0059261_1821 +0.2 1.5 formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Ga0059261_1513 +0.2 1.0 hypothetical protein compare
Ga0059261_4090 +0.2 1.5 Glycosyltransferase compare
Ga0059261_1018 +0.2 1.3 hypothetical protein compare
Ga0059261_0794 +0.2 1.4 hypothetical protein compare
Ga0059261_1425 +0.2 1.5 Protein of unknown function (DUF1203) compare
Ga0059261_1514 +0.2 1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_3272 +0.2 1.4 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) compare
Ga0059261_0579 +0.2 1.6 Neutral trehalase compare
Ga0059261_1743 +0.2 0.7 hypothetical protein compare
Ga0059261_3222 +0.2 1.1 adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Ga0059261_3998 +0.2 1.4 Beta-lactamase class C and other penicillin binding proteins compare


Specific Phenotypes

For 1 genes in this experiment

For stress 5-Hydroxymethylfurfural in Sphingomonas koreensis DSMZ 15582

For stress 5-Hydroxymethylfurfural across organisms