Experiment set4IT025 for Sphingomonas koreensis DSMZ 15582

LB with methylglyoxal 0.005 vol%

Group: stress
Media: LB + methylglyoxal (0.005 vol%)
Culturing: korea_ML2, 48 well microplate; Tecan Infinite F200, Aerobic, at 28 (C), shaken=orbital
By: Jordan on 10/22/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1020 B1,B2

Specific Phenotypes

For 14 genes in this experiment

For stress methylglyoxal in Sphingomonas koreensis DSMZ 15582

For stress methylglyoxal across organisms

SEED Subsystems

Subsystem	#Specific
DNA repair, UvrABC system	3
DNA-replication	2
DNA repair, bacterial RecFOR pathway	2
Glutathione: Non-redox reactions	2
Methylglyoxal Metabolism	2
Thioredoxin-disulfide reductase	2
DNA repair, bacterial	1
DNA repair, bacterial UvrD and related helicases	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pyruvate metabolism
• Purine metabolism
• Histidine metabolism
• Selenoamino acid metabolism
• Glutathione metabolism
• Lipopolysaccharide biosynthesis
• Glyoxylate and dicarboxylate metabolism
• Folate biosynthesis

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
methylglyoxal degradation VIII	3	2	2
methylglyoxal degradation I	3	2	2
superpathway of methylglyoxal degradation	8	3	2
L-histidine degradation II	5	5	1