Experiment set4IT024 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with Rifampicin 0.0016 mg/ml

200 most important genes:

  gene name fitness t score description  
AO356_15325 -4.6 -4.5 hypothetical protein compare
AO356_22795 -4.2 -4.1 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_04560 -4.0 -2.8 serine peptidase compare
AO356_19420 -3.9 -2.7 septum formation inhibitor compare
AO356_21125 -3.5 -5.2 cyclic peptide transporter compare
AO356_08895 -3.2 -2.2 GlcNAc-PI de-N-acetylase compare
AO356_07910 -3.1 -2.1 exodeoxyribonuclease V subunit alpha compare
AO356_19080 -3.0 -12.1 dehydrogenase compare
AO356_17515 -2.9 -12.7 murein transglycosylase compare
AO356_18025 -2.8 -4.2 ATP-dependent DNA helicase RuvB compare
AO356_06385 -2.8 -4.5 recombinase XerD compare
AO356_07915 -2.6 -4.0 exodeoxyribonuclease V subunit beta compare
AO356_02265 -2.6 -3.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_13345 -2.6 -3.8 cell division ATP-binding protein FtsE compare
AO356_17985 -2.6 -5.3 cold-shock protein compare
AO356_18020 -2.6 -4.6 ATP-dependent DNA helicase RuvA compare
AO356_18060 -2.6 -9.7 hypothetical protein compare
AO356_06575 -2.5 -3.8 outer membrane protein assembly factor BamB compare
AO356_05670 -2.5 -4.0 recombinase RecA compare
AO356_24655 -2.5 -4.6 hypothetical protein compare
AO356_14050 -2.4 -2.3 glutathione S-transferase compare
AO356_24645 -2.4 -6.9 hypothetical protein compare
AO356_02465 -2.4 -3.2 carbonate dehydratase compare
AO356_11315 -2.4 -2.8 shikimate dehydrogenase compare
AO356_08930 -2.4 -3.5 heptose kinase compare
AO356_01750 -2.3 -5.0 ATP-dependent Clp protease proteolytic subunit compare
AO356_14505 -2.2 -2.7 peptidase M23 compare
AO356_05995 -2.2 -3.6 hypothetical protein compare
AO356_08925 -2.2 -6.0 lipopolysaccharide kinase compare
AO356_09540 -2.1 -2.3 twin-arginine protein translocation system subunit TatC compare
AO356_06990 -2.1 -6.4 toluene tolerance protein compare
AO356_24665 -2.1 -5.8 AAA family ATPase compare
AO356_13350 -2.0 -14.2 cell division protein FtsX compare
AO356_08905 -2.0 -1.9 glycosyl transferase compare
AO356_03345 -2.0 -9.6 hypothetical protein compare
AO356_03405 -1.9 -4.4 serine acetyltransferase compare
AO356_12380 -1.8 -7.8 ATP-dependent DNA helicase RecG compare
AO356_03355 -1.7 -3.7 hypothetical protein compare
AO356_02190 -1.7 -7.2 hypothetical protein compare
AO356_24650 -1.7 -3.9 BatB protein compare
AO356_24640 -1.7 -7.2 protein BatD compare
AO356_01755 -1.6 -3.2 trigger factor compare
AO356_06325 -1.5 -1.7 plasmid stabilization protein ParE compare
AO356_12725 -1.5 -3.8 recombinase XerC compare
AO356_20175 -1.5 -2.3 3-oxoacyl-ACP synthase compare
AO356_25505 -1.5 -1.6 hypothetical protein compare
AO356_06615 -1.4 -1.7 FeS assembly protein IscX compare
AO356_15165 -1.4 -2.6 protein cII compare
AO356_07005 -1.4 -1.7 ABC transporter ATP-binding protein compare
AO356_05415 -1.4 -4.1 hypothetical protein compare
AO356_06995 -1.3 -4.1 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_14295 -1.3 -1.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_24550 -1.3 -1.5 hypothetical protein compare
AO356_07000 -1.3 -2.5 ABC transporter permease compare
AO356_04555 -1.3 -6.5 peptidase M48 compare
AO356_17065 -1.2 -2.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_01875 -1.2 -1.4 Cro/Cl family transcriptional regulator compare
AO356_08910 -1.2 -3.5 carbamoyltransferase compare
AO356_03400 -1.1 -4.3 aminotransferase DegT compare
AO356_01745 -1.1 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_12515 -1.1 -3.6 exodeoxyribonuclease III compare
AO356_25260 -1.1 -1.4 iron transporter compare
AO356_28645 -1.1 -2.4 AraC family transcriptional regulator compare
AO356_04550 -1.1 -2.9 response regulator SirA compare
AO356_19090 -1.1 -1.7 phosphoribosylaminoimidazole synthetase compare
AO356_08890 -1.1 -5.8 glycosyltransferase compare
AO356_03800 -1.1 -1.1 histidine kinase compare
AO356_07400 -1.1 -4.5 pseudouridine synthase compare
AO356_28610 -1.0 -1.9 AraC family transcriptional regulator compare
AO356_27630 -1.0 -2.1 chemotaxis protein CheY compare
AO356_00790 -1.0 -2.6 epimerase compare
AO356_19115 -1.0 -3.7 peptidase P60 compare
AO356_21200 -1.0 -1.5 quercetin 2,3-dioxygenase compare
AO356_11470 -1.0 -2.1 hypothetical protein compare
AO356_28910 -1.0 -1.5 LysR family transcriptional regulator compare
AO356_09775 -1.0 -4.5 peptidase M23 compare
AO356_17070 -1.0 -1.8 cytochrome B compare
AO356_25535 -1.0 -1.7 hypothetical protein compare
AO356_19425 -1.0 -1.8 lipid A biosynthesis lauroyl acyltransferase compare
AO356_20475 -1.0 -1.2 hypothetical protein compare
AO356_04815 -1.0 -1.8 hypothetical protein compare
AO356_03350 -0.9 -4.0 glycosyl transferase compare
AO356_27180 -0.9 -3.0 hypothetical protein compare
AO356_07750 -0.9 -1.7 plasmid stabilization protein compare
AO356_08210 -0.9 -3.3 hypothetical protein compare
AO356_05895 -0.9 -2.8 protein-L-isoaspartate O-methyltransferase compare
AO356_02360 -0.9 -2.5 multifunctional fatty acid oxidation complex subunit alpha compare
AO356_03415 -0.9 -4.6 oxidoreductase compare
AO356_26390 -0.9 -2.5 hypothetical protein compare
AO356_05900 -0.9 -2.6 stationary phase survival protein SurE compare
AO356_17505 -0.9 -2.6 DNA repair protein RecO compare
AO356_13710 -0.9 -1.9 fructose-bisphosphate aldolase compare
AO356_12520 -0.9 -1.8 orotate phosphoribosyltransferase compare
AO356_04420 -0.9 -2.4 ribonuclease D compare
AO356_15320 -0.9 -3.2 lytic transglycosylase compare
AO356_09780 -0.9 -2.6 peptidase S41 compare
AO356_09380 -0.9 -6.2 cell division protein compare
AO356_06105 -0.9 -0.9 cold-shock protein compare
AO356_03305 -0.9 -1.5 ATPase compare
AO356_07480 -0.9 -1.8 carbamoyl phosphate synthase large subunit compare
AO356_21135 -0.8 -4.5 class V aminotransferase compare
AO356_02275 -0.8 -1.8 hypothetical protein compare
AO356_24845 -0.8 -2.3 ATPase compare
AO356_16225 -0.8 -6.3 paraquat-inducible protein A compare
AO356_08670 -0.8 -1.7 N-acetylmuramoyl-L-alanine amidase compare
AO356_02290 -0.8 -2.1 TetR family transcriptional regulator compare
AO356_16230 -0.8 -6.2 paraquat-inducible protein A compare
AO356_16235 -0.8 -7.0 mammalian cell entry protein compare
AO356_04525 -0.8 -3.9 hypothetical protein compare
AO356_19515 -0.8 -1.3 hypothetical protein compare
AO356_15305 -0.8 -2.5 50S rRNA methyltransferase compare
AO356_28595 -0.8 -2.0 transcriptional regulator compare
AO356_03365 -0.8 -2.5 UDP-N-acetylglucosamine 2-epimerase compare
AO356_18065 -0.8 -2.4 7-carboxy-7-deazaguanine synthase compare
AO356_07920 -0.8 -2.7 exodeoxyribonuclease V subunit gamma compare
AO356_14105 -0.8 -1.6 glycine cleavage system protein R compare
AO356_20600 -0.8 -1.3 phage tail protein compare
AO356_08875 -0.8 -1.5 toluene tolerance protein compare
AO356_17520 -0.8 -1.1 phosphoribosylformylglycinamidine synthase compare
AO356_12730 -0.8 -1.8 hypothetical protein compare
AO356_02270 -0.8 -5.4 transcription-repair coupling factor compare
AO356_25420 -0.8 -1.7 chemotaxis protein CheY compare
AO356_08205 -0.8 -1.5 ribosomal protein L11 methyltransferase compare
AO356_20850 -0.8 -3.4 hypothetical protein compare
AO356_19255 -0.8 -2.2 molecular chaperone compare
AO356_28580 -0.8 -1.9 sugar ABC transporter permease compare
AO356_02205 -0.8 -1.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_08585 -0.8 -1.8 50S ribosomal protein L9 compare
AO356_29500 -0.8 -2.2 monooxygenase compare
AO356_00605 -0.8 -2.6 TetR family transcriptional regulator compare
AO356_11610 -0.8 -1.5 glycerol acyltransferase compare
AO356_12385 -0.7 -4.7 LysR family transcriptional regulator compare
AO356_16955 -0.7 -3.2 disulfide bond formation protein B compare
AO356_17960 -0.7 -3.3 nucleotide-binding protein compare
AO356_21925 -0.7 -4.7 hypothetical protein compare
AO356_24245 -0.7 -1.6 siderophore-iron reductase FhuF compare
AO356_21515 -0.7 -1.3 antitoxin compare
AO356_02495 -0.7 -3.5 recombination protein RecR compare
AO356_16485 -0.7 -3.2 hypothetical protein compare
AO356_25795 -0.7 -1.8 transglutaminase compare
AO356_04885 -0.7 -3.1 multidrug transporter compare
AO356_29835 -0.7 -1.3 LuxR family transcriptional regulator compare
AO356_12660 -0.7 -2.9 diguanylate cyclase compare
AO356_11585 -0.7 -2.9 lipid A biosynthesis lauroyl acyltransferase compare
AO356_11420 -0.7 -4.5 histidine kinase compare
AO356_04570 -0.7 -3.0 RNA polymerase subunit sigma compare
AO356_19650 -0.7 -5.3 serine/threonine protein kinase compare
AO356_10505 -0.7 -2.5 RND transporter compare
AO356_11465 -0.7 -3.8 DNA polymerase I compare
AO356_18605 -0.7 -1.3 XRE family transcriptional regulator compare
AO356_04300 -0.7 -5.0 aspartyl beta-hydroxylase compare
AO356_18775 -0.7 -1.7 aspartate kinase compare
AO356_20470 -0.7 -1.5 hypothetical protein compare
AO356_21740 -0.7 -2.1 cytochrome C compare
AO356_03500 -0.7 -2.5 3-oxoacyl-ACP reductase compare
AO356_01740 -0.7 -1.7 DNA-binding protein compare
AO356_02875 -0.7 -2.8 peroxiredoxin compare
AO356_19645 -0.7 -3.8 ABC transporter compare
AO356_29105 -0.7 -1.4 fumarylacetoacetate hydrolase compare
AO356_14550 -0.7 -3.5 hypothetical protein compare
AO356_08470 -0.7 -5.3 N-acylglucosamine 2-epimerase compare
AO356_08145 -0.6 -2.2 hypothetical protein compare
AO356_26910 -0.6 -1.9 hypothetical protein compare
AO356_00270 -0.6 -1.1 hypothetical protein compare
AO356_17890 -0.6 -1.0 H-NS histone compare
AO356_14775 -0.6 -5.0 catalase compare
AO356_08975 -0.6 -4.0 diguanylate cyclase compare
AO356_25560 -0.6 -2.4 2-keto-3-deoxy-L-rhamnonate aldolase compare
AO356_02800 -0.6 -1.8 transporter compare
AO356_18960 -0.6 -2.7 hypothetical protein compare
AO356_06690 -0.6 -1.3 queuine tRNA-ribosyltransferase compare
AO356_11055 -0.6 -1.9 long-chain acyl-CoA thioester hydrolase compare
AO356_11990 -0.6 -4.3 DNA helicase II compare
AO356_22665 -0.6 -1.3 chemotaxis protein compare
AO356_22585 -0.6 -1.6 MerR family transcriptional regulator compare
AO356_24725 -0.6 -1.6 alkylhydroperoxidase compare
AO356_18155 -0.6 -1.0 cold-shock protein compare
AO356_04055 -0.6 -1.3 hypothetical protein compare
AO356_09500 -0.6 -1.0 polyhydroxyalkanoic acid system protein compare
AO356_05650 -0.6 -2.9 hypothetical protein compare
AO356_21205 -0.6 -2.0 mechanosensitive ion channel protein MscS compare
AO356_30000 -0.6 -1.7 hypothetical protein compare
AO356_17555 -0.6 -1.6 GntR family transcriptional regulator compare
AO356_29695 -0.6 -1.8 polysaccharide deacetylase compare
AO356_21835 -0.6 -1.3 glyoxalase compare
AO356_16035 -0.6 -4.7 hypothetical protein compare
AO356_23860 -0.6 -1.8 hypothetical protein compare
AO356_25715 -0.6 -1.2 branched-chain amino acid ABC transporter substrate-binding protein compare
AO356_05095 -0.6 -1.6 hypothetical protein compare
AO356_01625 -0.6 -1.7 RNA polymerase subunit sigma-24 compare
AO356_26755 -0.6 -1.4 DNA-directed RNA polymerase subunit alpha compare
AO356_24185 -0.6 -2.6 isochorismate-pyruvate lyase compare
AO356_22145 -0.6 -3.3 ATP-dependent Clp protease adaptor ClpS compare
AO356_01785 -0.6 -2.4 hypothetical protein compare
AO356_15420 -0.6 -3.1 hypothetical protein compare
AO356_08055 -0.6 -1.6 copper resistance protein CopZ compare
AO356_04565 -0.6 -3.4 RNA polymerase subunit sigma compare
AO356_01410 -0.6 -1.1 hypothetical protein compare
AO356_25565 -0.6 -1.6 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
AO356_05465 -0.6 -2.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2C3 in stress experiments

For stress Rifampicin across organisms