Experiment set4IT024 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium succinate dibasic hexahydrate carbon source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS20575 -4.5 -5.3 3-isopropylmalate dehydratase small subunit compare
PFLU_RS23115 -4.3 -15.3 dicarboxylate/amino acid:cation symporter compare
PFLU_RS30030 -4.2 -1.6 membrane protein compare
PFLU_RS00175 -3.8 -6.4 tryptophan synthase subunit alpha compare
PFLU_RS25640 -3.8 -11.5 ketol-acid reductoisomerase compare
PFLU_RS28695 -3.8 -8.3 phosphoglycerate dehydrogenase compare
PFLU_RS02490 -3.7 -13.2 phosphoserine phosphatase SerB compare
PFLU_RS04070 -3.6 -3.5 peptide chain release factor 3 compare
PFLU_RS18505 -3.6 -9.2 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS20540 -3.5 -12.0 phosphoribosylanthranilate isomerase compare
PFLU_RS12975 -3.5 -5.8 DUF934 domain-containing protein compare
PFLU_RS22740 -3.5 -5.3 phosphoadenylyl-sulfate reductase compare
PFLU_RS12980 -3.4 -10.2 nitrite/sulfite reductase compare
PFLU_RS28535 -3.4 -16.2 dihydroxy-acid dehydratase compare
PFLU_RS00180 -3.4 -8.5 tryptophan synthase subunit beta compare
PFLU_RS20580 -3.4 -14.3 3-isopropylmalate dehydratase large subunit compare
PFLU_RS20565 -3.3 -15.2 3-isopropylmalate dehydrogenase compare
PFLU_RS28655 -3.3 -14.4 HAD family hydrolase compare
PFLU_RS23070 -3.3 -1.7 50S ribosomal protein L32 compare
PFLU_RS24125 -3.3 -7.5 cold-shock protein compare
PFLU_RS03075 -3.3 -2.2 translation initiation factor Sui1 compare
PFLU_RS01620 -3.1 -10.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS01400 -3.1 -14.1 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS15990 -3.1 -1.9 SDR family oxidoreductase compare
PFLU_RS23065 -3.1 -11.3 phosphate acyltransferase PlsX compare
PFLU_RS24765 -3.1 -20.2 2-isopropylmalate synthase compare
PFLU_RS09055 -3.1 -2.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS01605 -3.0 -10.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS28165 -3.0 -13.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS29515 -2.9 -12.2 RidA family protein compare
PFLU_RS03645 -2.8 -13.8 tetratricopeptide repeat protein compare
PFLU_RS01610 -2.8 -12.7 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS27370 -2.7 -12.7 anthranilate phosphoribosyltransferase compare
PFLU_RS01900 -2.7 -8.9 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS22595 -2.7 -4.4 OmpA family protein compare
PFLU_RS25360 -2.7 -7.7 glutamate 5-kinase compare
PFLU_RS01625 -2.6 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS01645 -2.6 -12.5 S41 family peptidase compare
PFLU_RS01895 -2.6 -5.8 phosphoribosyl-ATP diphosphatase compare
PFLU_RS28385 -2.6 -13.4 homoserine O-acetyltransferase compare
PFLU_RS01965 -2.6 -1.8 ATP-dependent protease subunit HslV compare
PFLU_RS06055 -2.6 -1.6 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS18530 -2.5 -4.6 DNA translocase FtsK compare
PFLU_RS28965 -2.5 -10.6 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS23305 -2.4 -10.1 arginine N-succinyltransferase compare
PFLU_RS01995 -2.4 -13.4 malate dehydrogenase compare
PFLU_RS20515 -2.4 -3.9 amidophosphoribosyltransferase compare
PFLU_RS01615 -2.3 -4.6 DUF2164 domain-containing protein compare
PFLU_RS25735 -2.3 -8.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS24095 -2.3 -2.2 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS04470 -2.3 -11.7 histidinol dehydrogenase compare
PFLU_RS20510 -2.2 -11.1 O-succinylhomoserine sulfhydrylase compare
PFLU_RS22070 -2.2 -5.1 phosphoribosylglycinamide formyltransferase compare
PFLU_RS15410 -2.2 -2.8 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS04465 -2.2 -7.0 ATP phosphoribosyltransferase compare
PFLU_RS28390 -2.2 -8.0 methionine biosynthesis protein MetW compare
PFLU_RS01285 -2.2 -1.5 HAMP domain-containing protein compare
PFLU_RS16580 -2.1 -3.4 hypothetical protein compare
PFLU_RS27365 -2.1 -7.7 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS00310 -2.1 -1.8 twin transmembrane helix small protein compare
PFLU_RS30165 -2.1 -8.7 ParA family protein compare
PFLU_RS25750 -2.0 -5.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS29095 -2.0 -14.5 polyphosphate kinase 1 compare
PFLU_RS03770 -2.0 -9.8 sulfate adenylyltransferase subunit CysN compare
PFLU_RS29275 -2.0 -6.2 DUF484 family protein compare
PFLU_RS23310 -2.0 -9.2 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS00445 -1.9 -2.0 hypothetical protein compare
PFLU_RS21360 -1.9 -1.8 MarR family transcriptional regulator compare
PFLU_RS04565 -1.9 -1.2 TMEM165/GDT1 family protein compare
PFLU_RS13540 -1.9 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS18665 -1.9 -3.0 NADH-quinone oxidoreductase subunit L compare
PFLU_RS02590 -1.9 -7.8 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS22095 -1.9 -13.0 GTP diphosphokinase compare
PFLU_RS20520 -1.8 -8.3 colicin V production protein CvpA compare
PFLU_RS08155 -1.8 -4.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS14810 -1.8 -2.3 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS12650 -1.8 -3.1 hypothetical protein compare
PFLU_RS18635 -1.8 -3.2 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS05630 -1.8 -2.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS06320 -1.8 -3.8 OmpH family outer membrane protein compare
PFLU_RS31290 -1.7 -2.0 EamA family transporter compare
PFLU_RS24090 -1.7 -2.8 Holliday junction branch migration protein RuvA compare
PFLU_RS23675 -1.7 -2.9 hypothetical protein compare
PFLU_RS20730 -1.7 -1.7 hypothetical protein compare
PFLU_RS22105 -1.7 -4.9 cysteine synthase CysM compare
PFLU_RS26545 -1.7 -7.8 sel1 repeat family protein compare
PFLU_RS26595 -1.6 -1.9 lipoprotein compare
PFLU_RS01405 -1.6 -6.6 sensor histidine kinase compare
PFLU_RS07685 -1.6 -3.0 transcriptional repressor LexA compare
PFLU_RS25595 -1.6 -1.1 exodeoxyribonuclease V subunit gamma compare
PFLU_RS23920 -1.6 -2.8 septation protein A compare
PFLU_RS05340 -1.6 -2.4 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS21110 -1.6 -2.3 AAA family ATPase compare
PFLU_RS25225 -1.6 -7.8 disulfide bond formation protein B compare
PFLU_RS07275 -1.6 -2.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS25800 -1.6 -5.1 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS03765 -1.6 -7.1 sulfate adenylyltransferase subunit CysD compare
PFLU_RS19165 -1.5 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS21495 -1.5 -2.9 TlpA family protein disulfide reductase compare
PFLU_RS25755 -1.5 -3.5 pantoate--beta-alanine ligase compare
PFLU_RS24485 -1.5 -7.3 hypothetical protein compare
PFLU_RS02980 -1.5 -1.9 precorrin-8X methylmutase compare
PFLU_RS23185 -1.5 -8.7 protein-glutamate O-methyltransferase CheR compare
PFLU_RS19550 -1.5 -1.1 ABC transporter ATP-binding protein compare
PFLU_RS28650 -1.5 -5.5 RNA pyrophosphohydrolase compare
PFLU_RS18640 -1.5 -3.6 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS22030 -1.5 -2.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS18420 -1.5 -2.6 hypothetical protein compare
PFLU_RS04530 -1.4 -1.5 hypothetical protein compare
PFLU_RS23730 -1.4 -8.6 MurR/RpiR family transcriptional regulator compare
PFLU_RS26565 -1.4 -1.5 rRNA maturation RNase YbeY compare
PFLU_RS18670 -1.4 -1.9 NADH-quinone oxidoreductase subunit M compare
PFLU_RS18675 -1.4 -2.3 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS29900 -1.4 -8.4 DNA helicase II compare
PFLU_RS03970 -1.4 -5.4 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS25585 -1.4 -1.6 exodeoxyribonuclease V subunit alpha compare
PFLU_RS25645 -1.4 -1.3 acetolactate synthase small subunit compare
PFLU_RS19170 -1.4 -3.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS01960 -1.3 -1.5 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS00415 -1.3 -1.9 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS18620 -1.3 -3.7 NADH-quinone oxidoreductase subunit B compare
PFLU_RS18645 -1.3 -2.5 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS08505 -1.3 -4.3 protease HtpX compare
PFLU_RS24085 -1.3 -3.5 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS19855 -1.3 -2.0 DUF4398 domain-containing protein compare
PFLU_RS08655 -1.3 -0.9 heme ABC transporter permease compare
PFLU_RS21425 -1.3 -3.7 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS04715 -1.3 -3.6 D-alanine--D-alanine ligase compare
PFLU_RS05780 -1.2 -6.9 helix-turn-helix transcriptional regulator compare
PFLU_RS24025 -1.2 -6.6 quinolinate synthase NadA compare
PFLU_RS17580 -1.2 -1.8 repressor LexA compare
PFLU_RS29195 -1.2 -5.5 heme biosynthesis protein HemY compare
PFLU_RS12635 -1.2 -2.0 conjugal transfer protein TraR compare
PFLU_RS18625 -1.2 -5.0 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS16390 -1.2 -0.8 DUF411 domain-containing protein compare
PFLU_RS07665 -1.2 -1.1 type I DNA topoisomerase compare
PFLU_RS24560 -1.2 -5.1 site-specific tyrosine recombinase XerD compare
PFLU_RS01885 -1.2 -2.5 Sec-independent protein translocase subunit TatB compare
PFLU_RS29310 -1.2 -1.2 accessory factor UbiK family protein compare
PFLU_RS19240 -1.2 -2.0 Zn-dependent hydrolase compare
PFLU_RS01320 -1.2 -5.6 phosphoenolpyruvate carboxykinase compare
PFLU_RS04325 -1.2 -7.9 ribonuclease G compare
PFLU_RS17295 -1.2 -3.2 type VI secretion system contractile sheath small subunit compare
PFLU_RS31215 -1.1 -2.2 hypothetical protein compare
PFLU_RS23590 -1.1 -1.1 gluconokinase compare
PFLU_RS07735 -1.1 -3.4 PilZ domain-containing protein compare
PFLU_RS13795 -1.1 -1.5 hypothetical protein compare
PFLU_RS07645 -1.1 -3.3 hypothetical protein compare
PFLU_RS05885 -1.1 -3.9 recombinase RecA compare
PFLU_RS27380 -1.1 -6.9 anthranilate synthase component I compare
PFLU_RS09845 -1.1 -1.3 biotin carboxyl carrier domain-containing protein compare
PFLU_RS18615 -1.1 -1.8 NADH-quinone oxidoreductase subunit A compare
PFLU_RS30490 -1.1 -2.8 hypothetical protein compare
PFLU_RS09305 -1.1 -7.2 hypothetical protein compare
PFLU_RS10355 -1.1 -2.2 DeoR family transcriptional regulator compare
PFLU_RS25875 -1.1 -2.1 transcription elongation factor GreA compare
PFLU_RS30105 -1.1 -1.8 DeoR family transcriptional regulator compare
PFLU_RS22600 -1.1 -1.5 RNA polymerase sigma factor SigX compare
PFLU_RS31630 -1.1 -1.6 hypothetical protein compare
PFLU_RS12000 -1.1 -4.2 hypothetical protein compare
PFLU_RS04150 -1.1 -2.6 DUF1043 family protein compare
PFLU_RS25220 -1.1 -4.7 ubiquinol oxidase subunit II compare
PFLU_RS22045 -1.1 -5.7 peptidase P60 compare
PFLU_RS08675 -1.1 -1.0 DsbE family thiol:disulfide interchange protein compare
PFLU_RS20690 -1.1 -2.4 hypothetical protein compare
PFLU_RS28320 -1.1 -2.0 glutathione synthase compare
PFLU_RS26770 -1.1 -6.1 DedA family protein compare
PFLU_RS25925 -1.1 -1.7 RnfH family protein compare
PFLU_RS03960 -1.0 -1.3 tRNA-Thr compare
PFLU_RS09980 -1.0 -7.5 peptidase S41 compare
PFLU_RS02670 -1.0 -2.3 hypothetical protein compare
PFLU_RS26735 -1.0 -5.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS13105 -1.0 -2.0 nuclear transport factor 2 family protein compare
PFLU_RS21655 -1.0 -2.8 response regulator compare
PFLU_RS25740 -1.0 -3.9 polynucleotide adenylyltransferase PcnB compare
PFLU_RS10835 -1.0 -1.9 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS27580 -1.0 -1.7 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
PFLU_RS31530 -1.0 -0.7 transposase compare
PFLU_RS00190 -1.0 -1.6 DUF883 domain-containing protein compare
PFLU_RS29735 -1.0 -5.0 HlyC/CorC family transporter compare
PFLU_RS12685 -1.0 -2.8 hypothetical protein compare
PFLU_RS07695 -1.0 -2.6 beta-N-acetylhexosaminidase compare
PFLU_RS29090 -1.0 -4.8 exopolyphosphatase compare
PFLU_RS22735 -1.0 -4.8 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS30160 -1.0 -2.0 ParB/RepB/Spo0J family partition protein compare
PFLU_RS02975 -1.0 -4.0 precorrin-3B synthase compare
PFLU_RS04220 -1.0 -4.3 FadR family transcriptional regulator compare
PFLU_RS11680 -1.0 -2.0 G/U mismatch-specific DNA glycosylase compare
PFLU_RS03610 -1.0 -3.6 redox-regulated ATPase YchF compare
PFLU_RS30645 -1.0 -2.3 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS31445 -1.0 -2.4 colicin immunity protein compare
PFLU_RS02970 -1.0 -2.9 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS28265 -1.0 -1.8 malonate decarboxylase subunit delta compare
PFLU_RS20285 -0.9 -4.0 MerR family transcriptional regulator compare
PFLU_RS02050 -0.9 -6.2 NAD(P)-binding protein compare
PFLU_RS31800 -0.9 -1.3 hypothetical protein compare
PFLU_RS19175 -0.9 -4.3 trigger factor compare
PFLU_RS05965 -0.9 -1.0 hypothetical protein compare
PFLU_RS22365 -0.9 -2.8 membrane protein compare
PFLU_RS13010 -0.9 -2.8 Fe-S biogenesis protein NfuA compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in carbon source experiments

For carbon source Sodium succinate dibasic hexahydrate across organisms